The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
96
|
sequence length |
393
|
structure length |
386
|
Chain Sequence |
LFPPQIKVAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYAKQIDGMGGATSSTSKTVILSHSSKANHDVDYLFGQVSIDKPFVDWSGNGNLTAAVGAFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQIEFMNPAADCMFPTGNLVDVLEVPGIGRFNATMINAGIPTIFINAEDLGYTGTELQDDINSDNAALAKFETIRAHGALRMGLIKHIDEAASRQHTPKIAFVAPPKSYASSSGKTVAAEDVDLLVRALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTLRVGAQAVQENGEWTVIKAIMSRSARVLMEGFVRVPKP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: insights into its biological function.
pubmed doi rcsb |
| molecule tags |
Unknown function
|
| source organism |
Shewanella oneidensis
|
| molecule keywords |
PrpF methylaconitate isomerase
|
| total genus |
96
|
| structure length |
386
|
| sequence length |
393
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-05-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04303 | PrpF | PrpF protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Diaminopimelate Epimerase; Chain A, domain 1 | Diaminopimelate Epimerase; Chain A, domain 1 | ||
| Alpha Beta | Roll | Diaminopimelate Epimerase; Chain A, domain 1 | Diaminopimelate Epimerase; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 5H2Y A; 1QYA A; 1U1X A; 2GKJ A; 1YM5 A; 4JCI A; 1U0K A; 3EKM A; 4JBD A; 5M47 A; 2OTN A; 5H2G A; 1GQZ A; 2Q9H A; 2PVZ A; 3EDN A; 1BWZ A; 5IWE A; 1XUB A; 5HA4 A; 4JD7 A; 4Q2H A; 4Q60 A; 2H9F A; 1U1W A; 1W61 A; 4J9X A; 4IK0 A; 4J9W A; 4K8L A; 4JUU A; 1SDJ A; 1U1V A; 4K7G B; 4DUN A; 2Q9J A; 3EJX A; 1T6K A; 2AZP A; 4IJZ A; 2PW0 A; 4K7X A; 1XUA A; 1TM0 A; 1W62 A; 2GKE A; 4LB0 A; 1S7J A; 3G7K A; 1QY9 A; 3FVE A; #chains in the Genus database with same CATH topology 2QB6 A; 1YM5 A; 3PTJ A; 1K23 A; 3PVH A; 1K20 A; 1IR6 A; 1BWZ A; 3WQZ A; 5HA4 A; 4PY9 A; 4Q2H A; 4J9W A; 2AZP A; 2EB0 A; 1TM0 A; 1W62 A; 5H2Y A; 3PW9 A; 2ENX A; 4GL6 A; 3EKM A; 4JBD A; 5M47 A; 4LG3 A; 2OTN A; 3DEV A; 1GQZ A; 4LS9 A; 2YMA A; 5IWE A; 1XUB A; 2H9F A; 1W61 A; 4J9X A; 4IK0 A; 4JUU A; 1U1V A; 4DUN A; 2Q9J A; 2ZVF A; 2HAW A; 1XUA A; 2KPT A; 5ANP A; 2LT2 A; 1S7J A; 3G7K A; 3FVE A; 1U1X A; 3IGH X; 2ZXO A; 3W5W A; 2ZXP A; 5H2G A; 2IW4 A; 2ZXR A; 3EDN A; 4RPA A; 3ICJ A; 4OA3 A; 1WPP A; 3G98 A; 1I74 A; 4K8L A; 1SDJ A; 2MPB A; 1WPM A; 4IJZ A; 2PW0 A; 4K7X A; 2KW7 A; 4LB0 A; 1QYA A; 2GKJ A; 4JCI A; 1U0K A; 2Q9H A; 2PVZ A; 2QB7 A; 4JD7 A; 4Q60 A; 1U1W A; 4K7G B; 3EJX A; 1T6K A; 2QB8 A; 2GKE A; 1QY9 A; #chains in the Genus database with same CATH homology 2QB6 A; 1YM5 A; 3PTJ A; 1K23 A; 3PVH A; 1K20 A; 1IR6 A; 1BWZ A; 3WQZ A; 5HA4 A; 4PY9 A; 4Q2H A; 4J9W A; 2AZP A; 2EB0 A; 1TM0 A; 1W62 A; 5H2Y A; 3PW9 A; 2ENX A; 4GL6 A; 3EKM A; 4JBD A; 5M47 A; 4LG3 A; 2OTN A; 3DEV A; 1GQZ A; 4LS9 A; 2YMA A; 5IWE A; 1XUB A; 2H9F A; 1W61 A; 4J9X A; 4IK0 A; 4JUU A; 1U1V A; 4DUN A; 2Q9J A; 2ZVF A; 2HAW A; 1XUA A; 2KPT A; 5ANP A; 2LT2 A; 1S7J A; 3G7K A; 3FVE A; 1U1X A; 3IGH X; 2ZXO A; 3W5W A; 2ZXP A; 5H2G A; 2IW4 A; 2ZXR A; 3EDN A; 4RPA A; 3ICJ A; 4OA3 A; 1WPP A; 3G98 A; 1I74 A; 4K8L A; 1SDJ A; 2MPB A; 1WPM A; 4IJZ A; 2PW0 A; 4K7X A; 2KW7 A; 4LB0 A; 1QYA A; 2GKJ A; 4JCI A; 1U0K A; 2Q9H A; 2PVZ A; 2QB7 A; 4JD7 A; 4Q60 A; 1U1W A; 4K7G B; 3EJX A; 1T6K A; 2QB8 A; 2GKE A; 1QY9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
