3FMT | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	162
structure length	162
Chain Sequence	MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication inhibitor/dna
source organism	Escherichia coli
publication title	Structural insights into the cooperative binding of SeqA to a tandem GATC repeat pubmed doi rcsb
molecule keywords	Protein seqA
total genus	49
structure length	162
sequence length	162
chains with identical sequence	B, E, F
ec nomenclature
pdb deposition date	2008-12-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03925	SeqA	SeqA protein C-terminal domain
A	PF17206	SeqA_N	SeqA protein N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	3fmtA01
1.20.1380.10	Mainly Alpha	Up-down Bundle	Replication modulator SeqA, C-terminal DNA-binding domain	Replication modulator SeqA, C-terminal DNA-binding domain	3fmtA02

1ARQA 2HZAA 2WVFA 2CAJA 2JXGA 4HV0A 3VEAA 1BDTA 2BJ3A 2BJ7A 2BJ9A 4ME7E 3FMTA 2K5JA 1X93A 2WVBA 2K6LA 2WVDA 1B28A 1IRQA 2BA3A 1IU3C 1MYKA 2JXHA 1QTGA 2K29A 2AY0A 2CA9A 3GXQA 1B01A 1BDVA 2BSQE 1ARRA 1PARA 2CADA 1LRRA 2GPEA 1BAZA 1MYLA 1P94A 3OD2A 1J3EA 1Q5VA 1U9PA 2BJ8A 2KELA 4FXEA 2WVCA 3VW4A 2JXIA 2BJ1A 1EA4A 2WVEA 3H87C 2CAXA 1NLAA 2BNWA 2K1OA 3FT7A 2BNZA 2HZVA 3LGHA 2RBFA 3VEBA 2CPGA 4D8JA 3SK7A 3QOQA 1MNTA 2K9IA 2H1OE
chains in the Genus database with same CATH superfamily

1SIWA 2WVFA 2JXGA 3BSOA 4MJWA 3VEAA 1BDTA 2BJ3A 2A2BA 3FMTA 3QIDA 3SFGA 1X93A 1Q16A 4O4RA 1MYKA 2K29A 4QPXA 3GXQA 3UQSA 2CADA 1LRRA 3IR7A 2ADLA 3G5OA 3VW4A 2BJ1A 2BNWA 2BNZA 3LGHA 3LJPA 3SK7A 2B43A 2HZAA 4HV0A 2KKEA 4ME7E 1IU3C 2WVBA 3SFUA 1IRQA 2BA3A 2JXHA 4NRTA 1QTGA 2AY0A 2CA9A 1B01A 2AN7A 2KOEA 2BSQE 3NO7A 3OD2A 4FXEA 2WVCA 3H5YA 2CAXA 1NLAA 3UPFA 3FT7A 2CPGA 3QOQA 2K9IA 1OHNA 2H3AA 2UUTA 2K5JA 1B28A 1SH2A 2WK4A 3NAHA 3UR0A 4LRVA 1SH0A 1PARA 2GPEA 1BAZA 1P94A 4AAIA 2KELA 2JXIA 2WVEA 3H87C 3NNEA 2HZVA 4D8JA 1EA4A 1MNTA 2H1OE 1ARQA 2CAJA 4LQ3A 1SH3A 2BJ7A 2BJ9A 3H5XA 2K6LA 2WVDA 1BDVA 1OG7A 1ARRA 1MYLA 2CKWA 1J3EA 1Q5VA 1U9PA 2BJ8A 2MEMA 2JBVA 4NRUA 3NAIA 2K1OA 2Q2KA 2UUWA 2RBFA 4LQ9A 3VEBA 3BSNA
chains in the Genus database with same CATH topology

1ARQA 2HZAA 2WVFA 2CAJA 2JXGA 4HV0A 3VEAA 1BDTA 2BJ3A 2BJ7A 2BJ9A 4ME7E 3FMTA 2K5JA 1X93A 2WVBA 2K6LA 2WVDA 1B28A 1IRQA 2BA3A 1IU3C 1MYKA 2JXHA 1QTGA 2K29A 2AY0A 2CA9A 3GXQA 1B01A 1BDVA 2BSQE 1ARRA 1PARA 2CADA 1LRRA 2GPEA 1BAZA 1MYLA 1P94A 3OD2A 1J3EA 1Q5VA 1U9PA 2BJ8A 2MEMA 2KELA 4FXEA 2WVCA 3VW4A 2JXIA 2BJ1A 1EA4A 2WVEA 3H87C 2CAXA 1NLAA 2BNWA 2K1OA 3FT7A 2BNZA 2HZVA 3LGHA 2RBFA 3VEBA 2CPGA 4D8JA 3SK7A 3QOQA 1MNTA 2K9IA 2H1OE
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1ARQ A;  2HZA A;  2WVF A;  2CAJ A;  2JXG A;  4HV0 A;  3VEA A;  1BDT A;  2BJ3 A;  2BJ7 A;  2BJ9 A;  4ME7 E;  3FMT A;  2K5J A;  1X93 A;  2WVB A;  2K6L A;  2WVD A;  1B28 A;  1IRQ A;  2BA3 A;  1IU3 C;  1MYK A;  2JXH A;  1QTG A;  2K29 A;  2AY0 A;  2CA9 A;  3GXQ A;  1B01 A;  1BDV A;  2BSQ E;  1ARR A;  1PAR A;  2CAD A;  1LRR A;  2GPE A;  1BAZ A;  1MYL A;  1P94 A;  3OD2 A;  1J3E A;  1Q5V A;  1U9P A;  2BJ8 A;  2KEL A;  4FXE A;  2WVC A;  3VW4 A;  2JXI A;  2BJ1 A;  1EA4 A;  2WVE A;  3H87 C;  2CAX A;  1NLA A;  2BNW A;  2K1O A;  3FT7 A;  2BNZ A;  2HZV A;  3LGH A;  2RBF A;  3VEB A;  2CPG A;  4D8J A;  3SK7 A;  3QOQ A;  1MNT A;  2K9I A;  2H1O E; 
#chains in the Genus database with same CATH topology
 1SIW A;  2WVF A;  2JXG A;  3BSO A;  4MJW A;  3VEA A;  1BDT A;  2BJ3 A;  2A2B A;  3FMT A;  3QID A;  3SFG A;  1X93 A;  1Q16 A;  4O4R A;  1MYK A;  2K29 A;  4QPX A;  3GXQ A;  3UQS A;  2CAD A;  1LRR A;  3IR7 A;  2ADL A;  3G5O A;  3VW4 A;  2BJ1 A;  2BNW A;  2BNZ A;  3LGH A;  3LJP A;  3SK7 A;  2B43 A;  2HZA A;  4HV0 A;  2KKE A;  4ME7 E;  1IU3 C;  2WVB A;  3SFU A;  1IRQ A;  2BA3 A;  2JXH A;  4NRT A;  1QTG A;  2AY0 A;  2CA9 A;  1B01 A;  2AN7 A;  2KOE A;  2BSQ E;  3NO7 A;  3OD2 A;  4FXE A;  2WVC A;  3H5Y A;  2CAX A;  1NLA A;  3UPF A;  3FT7 A;  2CPG A;  3QOQ A;  2K9I A;  1OHN A;  2H3A A;  2UUT A;  2K5J A;  1B28 A;  1SH2 A;  2WK4 A;  3NAH A;  3UR0 A;  4LRV A;  1SH0 A;  1PAR A;  2GPE A;  1BAZ A;  1P94 A;  4AAI A;  2KEL A;  2JXI A;  2WVE A;  3H87 C;  3NNE A;  2HZV A;  4D8J A;  1EA4 A;  1MNT A;  2H1O E;  1ARQ A;  2CAJ A;  4LQ3 A;  1SH3 A;  2BJ7 A;  2BJ9 A;  3H5X A;  2K6L A;  2WVD A;  1BDV A;  1OG7 A;  1ARR A;  1MYL A;  2CKW A;  1J3E A;  1Q5V A;  1U9P A;  2BJ8 A;  2MEM A;  2JBV A;  4NRU A;  3NAI A;  2K1O A;  2Q2K A;  2UUW A;  2RBF A;  4LQ9 A;  3VEB A;  3BSN A; 
#chains in the Genus database with same CATH homology
 1ARQ A;  2HZA A;  2WVF A;  2CAJ A;  2JXG A;  4HV0 A;  3VEA A;  1BDT A;  2BJ3 A;  2BJ7 A;  2BJ9 A;  4ME7 E;  3FMT A;  2K5J A;  1X93 A;  2WVB A;  2K6L A;  2WVD A;  1B28 A;  1IRQ A;  2BA3 A;  1IU3 C;  1MYK A;  2JXH A;  1QTG A;  2K29 A;  2AY0 A;  2CA9 A;  3GXQ A;  1B01 A;  1BDV A;  2BSQ E;  1ARR A;  1PAR A;  2CAD A;  1LRR A;  2GPE A;  1BAZ A;  1MYL A;  1P94 A;  3OD2 A;  1J3E A;  1Q5V A;  1U9P A;  2BJ8 A;  2MEM A;  2KEL A;  4FXE A;  2WVC A;  3VW4 A;  2JXI A;  2BJ1 A;  1EA4 A;  2WVE A;  3H87 C;  2CAX A;  1NLA A;  2BNW A;  2K1O A;  3FT7 A;  2BNZ A;  2HZV A;  3LGH A;  2RBF A;  3VEB A;  2CPG A;  4D8J A;  3SK7 A;  3QOQ A;  1MNT A;  2K9I A;  2H1O E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3FMTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations