The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
49
|
sequence length |
162
|
structure length |
162
|
Chain Sequence |
MKTIEVDDELYSYIASHTKHIGESRSDILRRMLKFSAASQKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insights into the cooperative binding of SeqA to a tandem GATC repeat
pubmed doi rcsb |
| molecule keywords |
Protein seqA
|
| molecule tags |
Replication inhibitor/dna
|
| source organism |
Escherichia coli
|
| total genus |
49
|
| structure length |
162
|
| sequence length |
162
|
| chains with identical sequence |
B, E, F
|
| ec nomenclature | |
| pdb deposition date | 2008-12-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03925 | SeqA | SeqA protein C-terminal domain |
| A | PF17206 | SeqA_N | SeqA protein N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant | Met repressor-like | ||
| Mainly Alpha | Up-down Bundle | Replication modulator SeqA, C-terminal DNA-binding domain | Replication modulator SeqA, C-terminal DNA-binding domain |
#chains in the Genus database with same CATH superfamily 2JXG A; 1P94 A; 2BJ1 A; 2K9I A; 1IRQ A; 4D8J A; 2AY0 A; 2BA3 A; 2KEL A; 2GPE A; 2JXI A; 2CA9 A; 1IU3 C; 3VEA A; 3FMT A; 3OD2 A; 1QTG A; 2K1O A; 2K6L A; 2WVD A; 2WVC A; 1B01 A; 2BSQ E; 2BJ8 A; 3SK7 A; 1X93 A; 3VEB A; 1BAZ A; 1Q5V A; 3H87 C; 1MYK A; 1EA4 A; 1LRR A; 2BJ7 A; 2JXH A; 2WVB A; 2WVE A; 3GXQ A; 1BDV A; 2HZV A; 1U9P A; 1ARQ A; 1NLA A; 1MNT A; 2K5J A; 2BJ9 A; 2K29 A; 4FXE A; 1BDT A; 2CAJ A; 2HZA A; 2WVF A; 4HV0 A; 2CAX A; 2CAD A; 2BJ3 A; 2H1O E; 1ARR A; 4ME7 E; 1MYL A; 1PAR A; 3LGH A; 1J3E A; 2CPG A; 3VW4 A; 2BNZ A; 3FT7 A; 1B28 A; 2RBF A; 2BNW A; 3QOQ A; #chains in the Genus database with same CATH topology 2BJ1 A; 2K9I A; 3NAH A; 2AY0 A; 2KEL A; 2GPE A; 1IU3 C; 3FMT A; 2BSQ E; 3H87 C; 1Q5V A; 1MYK A; 2UUW A; 1LRR A; 2BJ7 A; 3GXQ A; 2WVB A; 2KOE A; 3H5Y A; 2HZV A; 4LQ9 A; 2K29 A; 4HV0 A; 2BJ3 A; 3IR7 A; 1PAR A; 4NRT A; 4O4R A; 3FT7 A; 1B28 A; 2RBF A; 3QID A; 3QOQ A; 1P94 A; 1IRQ A; 2JXI A; 3NO7 A; 2WVC A; 3UPF A; 1X93 A; 3BSO A; 3VEB A; 2MEM A; 3G5O A; 2JXH A; 2WK4 A; 2WVE A; 1BDV A; 3H5X A; 4NRU A; 1NLA A; 2CAJ A; 2CAX A; 1ARR A; 1J3E A; 2CPG A; 2BNZ A; 2BNW A; 1SH0 A; 1SH3 A; 2CA9 A; 3NNE A; 3OD2 A; 1OHN A; 2A2B A; 2K1O A; 2K6L A; 2BJ8 A; 2H3A A; 4MJW A; 1BAZ A; 1EA4 A; 1OG7 A; 1Q16 A; 1MNT A; 2K5J A; 2AN7 A; 1BDT A; 2HZA A; 4AAI A; 4ME7 E; 2B43 A; 2Q2K A; 4QPX A; 3LGH A; 4LRV A; 3BSN A; 3SFG A; 2JXG A; 4D8J A; 2BA3 A; 3VEA A; 1SH2 A; 1QTG A; 3UR0 A; 2WVD A; 1B01 A; 3SK7 A; 2ADL A; 1ARQ A; 1U9P A; 4FXE A; 2BJ9 A; 3UQS A; 2WVF A; 3LJP A; 2H1O E; 2CAD A; 2JBV A; 2KKE A; 1MYL A; 2CKW A; 2UUT A; 3VW4 A; 3NAI A; 3SFU A; 1SIW A; 4LQ3 A; #chains in the Genus database with same CATH homology 2JXG A; 1P94 A; 2BJ1 A; 2K9I A; 1IRQ A; 4D8J A; 2AY0 A; 2BA3 A; 2KEL A; 2GPE A; 2JXI A; 2CA9 A; 1IU3 C; 3VEA A; 3FMT A; 3OD2 A; 1QTG A; 2K1O A; 2K6L A; 2WVD A; 2WVC A; 1B01 A; 2BSQ E; 2BJ8 A; 3SK7 A; 1X93 A; 3VEB A; 2MEM A; 1BAZ A; 1Q5V A; 3H87 C; 1MYK A; 1EA4 A; 1LRR A; 2BJ7 A; 2JXH A; 2WVB A; 2WVE A; 3GXQ A; 1BDV A; 2HZV A; 1U9P A; 1ARQ A; 1NLA A; 1MNT A; 2K5J A; 2BJ9 A; 2K29 A; 4FXE A; 1BDT A; 2CAJ A; 2HZA A; 2WVF A; 4HV0 A; 2CAX A; 2CAD A; 2BJ3 A; 2H1O E; 1ARR A; 4ME7 E; 1MYL A; 1PAR A; 3LGH A; 1J3E A; 2CPG A; 3VW4 A; 2BNZ A; 3FT7 A; 1B28 A; 2RBF A; 2BNW A; 3QOQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
