3PVHA

Structural and functional analysis of arabidopsis thaliana thylakoid lumen protein attlp18.3
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
153
structure length
153
Chain Sequence
SASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Arabidopsis thaliana
publication title Structural and functional assays of AtTLP18.3 identify its novel acid phosphatase activity in thylakoid lumen
pubmed doi rcsb
molecule keywords UPF0603 protein At1g54780, chloroplastic
total genus 57
structure length 153
sequence length 153
ec nomenclature
pdb deposition date 2010-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04536 TPM_phosphatase TPM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.50 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3pvhA00
3PVHA 2LT2A 2KW7A 2KPTA 3PW9A 4OA3A 2MPBA 3PTJA 5ANPA
chains in the Genus database with same CATH superfamily
1QY9A 1YM5A 2IW4A 4IJZA 2MPBA 4LB0A 4DUNA 1K20A 3EKMA 5M47A 2Q9JA 3IGHX 3G7KA 2YMAA 2GKEA 3ICJA 1XUBA 1I74A 3PVHA 2QB7A 3DEVA 2ZXRA 1BWZA 5H2GA 1IR6A 4J9WA 1W61A 1SDJA 1TM0A 1T6KA 2Q9HA 3WQZA 1WPPA 5IWEA 1XUAA 2H9FA 3PW9A 4OA3A 1W62A 4LS9A 4Q2HA 2OTNA 4K7GB 1K23A 2ZXPA 2KPTA 2AZPA 3FVEA 1U1VA 2KW7A 2ZXOA 2GKJA 4K8LA 3EJXA 4IK0A 3W5WA 3G98A 2ENXA 4J9XA 4PY9A 5ANPA 3EDNA 1WPMA 2ZVFA 5HA4A 4JUUA 1U0KA 2QB8A 4JBDA 2HAWA 4LG3A 1U1XA 4JD7A 2PW0A 1S7JA 4JCIA 4RPAA 1QYAA 4K7XA 2LT2A 4GL6A 4Q60A 1GQZA 1U1WA 3PTJA 2EB0A 2QB6A 5H2YA 2PVZA
chains in the Genus database with same CATH topology
1QY9A 1YM5A 2IW4A 4IJZA 2MPBA 4LB0A 4DUNA 1K20A 3EKMA 5M47A 2Q9JA 3IGHX 3G7KA 2YMAA 2GKEA 3ICJA 1XUBA 1I74A 3PVHA 2QB7A 3DEVA 2ZXRA 1BWZA 5H2GA 1IR6A 4J9WA 1W61A 1SDJA 1TM0A 1T6KA 2Q9HA 3WQZA 1WPPA 5IWEA 1XUAA 2H9FA 3PW9A 4OA3A 1W62A 4LS9A 4Q2HA 2OTNA 4K7GB 1K23A 2ZXPA 2KPTA 2AZPA 3FVEA 1U1VA 2KW7A 2ZXOA 2GKJA 4K8LA 3EJXA 4IK0A 3W5WA 3G98A 2ENXA 4J9XA 4PY9A 5ANPA 3EDNA 1WPMA 2ZVFA 5HA4A 4JUUA 1U0KA 2QB8A 4JBDA 2HAWA 4LG3A 1U1XA 4JD7A 2PW0A 1S7JA 4JCIA 4RPAA 1QYAA 4K7XA 2LT2A 4GL6A 4Q60A 1GQZA 1U1WA 3PTJA 2EB0A 2QB6A 5H2YA 2PVZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PVH A;  2LT2 A;  2KW7 A;  2KPT A;  3PW9 A;  4OA3 A;  2MPB A;  3PTJ A;  5ANP A; 
#chains in the Genus database with same CATH topology
 1QY9 A;  1YM5 A;  2IW4 A;  4IJZ A;  2MPB A;  4LB0 A;  4DUN A;  1K20 A;  3EKM A;  5M47 A;  2Q9J A;  3IGH X;  3G7K A;  2YMA A;  2GKE A;  3ICJ A;  1XUB A;  1I74 A;  3PVH A;  2QB7 A;  3DEV A;  2ZXR A;  1BWZ A;  5H2G A;  1IR6 A;  4J9W A;  1W61 A;  1SDJ A;  1TM0 A;  1T6K A;  2Q9H A;  3WQZ A;  1WPP A;  5IWE A;  1XUA A;  2H9F A;  3PW9 A;  4OA3 A;  1W62 A;  4LS9 A;  4Q2H A;  2OTN A;  4K7G B;  1K23 A;  2ZXP A;  2KPT A;  2AZP A;  3FVE A;  1U1V A;  2KW7 A;  2ZXO A;  2GKJ A;  4K8L A;  3EJX A;  4IK0 A;  3W5W A;  3G98 A;  2ENX A;  4J9X A;  4PY9 A;  5ANP A;  3EDN A;  1WPM A;  2ZVF A;  5HA4 A;  4JUU A;  1U0K A;  2QB8 A;  4JBD A;  2HAW A;  4LG3 A;  1U1X A;  4JD7 A;  2PW0 A;  1S7J A;  4JCI A;  4RPA A;  1QYA A;  4K7X A;  2LT2 A;  4GL6 A;  4Q60 A;  1GQZ A;  1U1W A;  3PTJ A;  2EB0 A;  2QB6 A;  5H2Y A;  2PVZ A; 
#chains in the Genus database with same CATH homology
 1QY9 A;  1YM5 A;  2IW4 A;  4IJZ A;  2MPB A;  4LB0 A;  4DUN A;  1K20 A;  3EKM A;  5M47 A;  2Q9J A;  3IGH X;  3G7K A;  2YMA A;  2GKE A;  3ICJ A;  1XUB A;  1I74 A;  3PVH A;  2QB7 A;  3DEV A;  2ZXR A;  1BWZ A;  5H2G A;  1IR6 A;  4J9W A;  1W61 A;  1SDJ A;  1TM0 A;  1T6K A;  2Q9H A;  3WQZ A;  1WPP A;  5IWE A;  1XUA A;  2H9F A;  3PW9 A;  4OA3 A;  1W62 A;  4LS9 A;  4Q2H A;  2OTN A;  4K7G B;  1K23 A;  2ZXP A;  2KPT A;  2AZP A;  3FVE A;  1U1V A;  2KW7 A;  2ZXO A;  2GKJ A;  4K8L A;  3EJX A;  4IK0 A;  3W5W A;  3G98 A;  2ENX A;  4J9X A;  4PY9 A;  5ANP A;  3EDN A;  1WPM A;  2ZVF A;  5HA4 A;  4JUU A;  1U0K A;  2QB8 A;  4JBD A;  2HAW A;  4LG3 A;  1U1X A;  4JD7 A;  2PW0 A;  1S7J A;  4JCI A;  4RPA A;  1QYA A;  4K7X A;  2LT2 A;  4GL6 A;  4Q60 A;  1GQZ A;  1U1W A;  3PTJ A;  2EB0 A;  2QB6 A;  5H2Y A;  2PVZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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