The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
55
|
sequence length |
171
|
structure length |
171
|
Chain Sequence |
DLLFAQLSPEDLIEWSDYLPESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the cystathionine beta-synthase pair domain of the putative Mg2+ transporter SO5017 from Shewanella oneidensis MR-1.
rcsb |
| molecule tags |
Transport protein
|
| source organism |
Shewanella oneidensis mr-1
|
| molecule keywords |
Magnesium transporter, putative
|
| total genus |
55
|
| structure length |
171
|
| sequence length |
171
|
| ec nomenclature | |
| pdb deposition date | 2009-12-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00571 | CBS | CBS domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Pheromone ER-1 | Pheromone ER-1 | ||
| Alpha Beta | Roll | CBS-domain | CBS-domain |
#chains in the Genus database with same CATH superfamily 1Y5H A; 2NYE A; 5IIP A; 1YAV A; 3FV6 A; 3PC3 A; 3LQN A; 4P1G A; 3L2B A; 3I8N A; 2OUX A; 5K24 C; 5KS7 A; 3FHM A; 4IY2 A; 3LHH A; 2UV4 A; 4L27 A; 2RIH A; 3LV9 A; 3LFZ A; 3FWR A; 2EF7 A; 3TDH C; 3OI8 A; 5LXQ A; 3KH5 A; 2NYC A; 2QRD E; 4IYS A; 3KPB A; 2YVX A; 3PC2 A; 5K25 C; 3K6E A; 2EMQ A; 2ZY9 A; 1XKF A; 2UV6 A; 2OOY E; 2QR1 E; 4ESY A; 3KXR A; 1PVM A; 4L3V A; 2QRC E; 3FWS A; 4UUU A; 3FNA A; 2OOX E; 3L31 A; 4GQW A; 3T4N C; 4HG0 A; 3OCO A; 4FXS A; 4L0D A; 3HF7 A; 2RIF A; 2UV7 A; 4ESY B; 3DDJ A; 3PC4 A; 2PFI A; 3K2V A; 2D4Z A; 4DQW A; 3TE5 C; 4IY3 A; 2P9M A; 5MMZ A; 3KPC A; 3SL7 A; 1O50 A; 1PBJ A; 4GQV A; 3KPD A; 4P1O A; 4NOC A; 4PCU A; 2QLV C; 2YVY A; 2UV5 A; 4COO A; 3OCM A; 5K23 C; 2RC3 A; 4GQY A; 4O9K A; 4L28 A; 4IY4 A; 3ORG A; 4FRY A; 2YZI A; 2YZQ A; 2QRE E; 3GBY A; 2YVZ A; 2QH1 A; 2O16 A; 5K22 B; 4IY0 A; #chains in the Genus database with same CATH topology 1Y5H A; 4E2K A; 2NYE A; 5IIP A; 2NSV A; 1YAV A; 3FV6 A; 3PC3 A; 3LQN A; 4P1G A; 3L2B A; 3I8N A; 2OUX A; 5K24 C; 5KS7 A; 3FHM A; 4IY2 A; 3LHH A; 2UV4 A; 4L27 A; 2RIH A; 1ERC A; 3LV9 A; 3LFZ A; 2B39 A; 3FWR A; 2AU3 A; 2ERL A; 2EF7 A; 3TDH C; 3OI8 A; 3KLS A; 5LXQ A; 3KH5 A; 2NYC A; 2QRD E; 4IYS A; 3KPB A; 2JA3 A; 2YVX A; 3PC2 A; 5K25 C; 3CU7 A; 3K6E A; 1EQN A; 2EMQ A; 2ZY9 A; 1XKF A; 2UV6 A; 2KC6 A; 3B39 A; 2OOY E; 2QR1 E; 4ESY A; 3KXR A; 1PVM A; 4L3V A; 2JMS A; 4EDV A; 2QRC E; 3FWS A; 4UUU A; 3FNA A; 2OOX E; 3L31 A; 4GQW A; 3T4N C; 4HG0 A; 3OCO A; 4FXS A; 4EDG A; 4L0D A; 3HF7 A; 2RIF A; 2UV7 A; 4ESY B; 3DDJ A; 3PC4 A; 2PFI A; 3K2V A; 1DDE A; 4EDT A; 2D4Z A; 2LMK A; 2KK2 A; 4DQW A; 3TE5 C; 2J9L A; 4IY3 A; 1DD9 A; 2P9M A; 5MMZ A; 3KPC A; 3SL7 A; 1O50 A; 1PBJ A; 4GQV A; 3KPD A; 4P1O A; 4EDR A; 4NOC A; 4PCU A; 2QLV C; 2YVY A; 2UV5 A; 4COO A; 3OCM A; 4EDK A; 2NSW A; 4EE1 A; 5K23 C; 2RC3 A; 4GQY A; 4O9K A; 4L28 A; 4IY4 A; 3ORG A; 4FRY A; 2YZI A; 2YZQ A; 2QRE E; 3GBY A; 2YVZ A; 2QH1 A; 2O16 A; 5K22 B; 4IY0 A; #chains in the Genus database with same CATH homology 1Y5H A; 4E2K A; 2NYE A; 5IIP A; 2NSV A; 1YAV A; 3FV6 A; 3PC3 A; 3LQN A; 4P1G A; 3L2B A; 3I8N A; 2OUX A; 5K24 C; 5KS7 A; 3FHM A; 4IY2 A; 3LHH A; 2UV4 A; 4L27 A; 2RIH A; 1ERC A; 3LV9 A; 3LFZ A; 2B39 A; 3FWR A; 2AU3 A; 2ERL A; 2EF7 A; 3TDH C; 3OI8 A; 3KLS A; 5LXQ A; 3KH5 A; 2NYC A; 2QRD E; 4IYS A; 3KPB A; 2JA3 A; 2YVX A; 3PC2 A; 5K25 C; 3CU7 A; 3K6E A; 1EQN A; 2EMQ A; 2ZY9 A; 1XKF A; 2UV6 A; 2KC6 A; 3B39 A; 2OOY E; 2QR1 E; 4ESY A; 3KXR A; 1PVM A; 4L3V A; 2JMS A; 4EDV A; 2QRC E; 3FWS A; 4UUU A; 3FNA A; 2OOX E; 3L31 A; 4GQW A; 3T4N C; 4HG0 A; 3OCO A; 4FXS A; 4EDG A; 4L0D A; 3HF7 A; 2RIF A; 2UV7 A; 4ESY B; 3DDJ A; 3PC4 A; 2PFI A; 3K2V A; 1DDE A; 4EDT A; 2D4Z A; 2LMK A; 2KK2 A; 4DQW A; 3TE5 C; 2J9L A; 4IY3 A; 1DD9 A; 2P9M A; 5MMZ A; 3KPC A; 3SL7 A; 1O50 A; 1PBJ A; 4GQV A; 3KPD A; 4P1O A; 4EDR A; 4NOC A; 4PCU A; 2QLV C; 2YVY A; 2UV5 A; 4COO A; 3OCM A; 4EDK A; 2NSW A; 4EE1 A; 5K23 C; 2RC3 A; 4GQY A; 4O9K A; 4L28 A; 4IY4 A; 3ORG A; 4FRY A; 2YZI A; 2YZQ A; 2QRE E; 3GBY A; 2YVZ A; 2QH1 A; 2O16 A; 5K22 B; 4IY0 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
