The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
94
|
Knots found |
|
sequence length |
263
|
structure length |
252
|
Chain Sequence |
MQDPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAEFSTEEQQEGPYVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPMLF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Design, characterization, and structure of a biologically active single-chain mutant of human IFN-gamma.
pubmed doi rcsb |
| molecule keywords |
Interferon gamma
|
| molecule tags |
Immune system
|
| source organism |
Homo sapiens
|
| total genus |
94
|
| structure length |
252
|
| sequence length |
263
|
| chains with identical sequence |
B
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature | |
| pdb deposition date | 2000-03-09 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Growth Hormone; Chain: A; | Growth Hormone; Chain: A; | ||
| Mainly Alpha | Up-down Bundle | Growth Hormone; Chain: A; | Growth Hormone; Chain: A; |
#chains in the Genus database with same CATH superfamily 1FYH A; 1PGR A; 3SE3 B; 3QB1 A; 1P9M B; 1EVS A; 3UX9 A; 2GMF A; 3N0P A; 2D48 A; 3QB7 A; 2INT A; 4NI7 A; 1ITF A; 1NBP A; 1EMR A; 3D48 P; 1HIJ A; 3NPZ A; 3INK C; 3S9D A; 4WRL B; 3N06 A; 1VLK A; 3L5W I; 2Q7N B; 1I1R B; 1Z92 A; 2LAG A; 1Y6N L; 2B91 A; 2B5I A; 1ILK A; 5KNH I; 1INR A; 1PW6 A; 2Q98 A; 4I77 Z; 4O9H A; 1GNC A; 1IRL A; 4NEM A; 4ZS7 A; 5E4E A; 3D85 C; 3QWR B; 3QAZ A; 3SE4 B; 3BPN A; 1HZI A; 4PS4 A; 3NCE A; 1IL6 A; 1RHG A; 3DGC L; 1A22 A; 1J7V L; 1RCB A; 1EER A; 1FG9 A; 1WU3 I; 1F6F A; 1Z7C A; 4GRW A; 1D9G A; 1D9C A; 1M48 A; 4X51 A; 1AX8 A; 1CD9 A; 1ITL A; 1M4R A; 1YKB A; 3BES L; 2O27 A; 3NCB A; 1A7M A; 2ILK A; 5FUC A; 1HIK A; 5C7X A; 1HWG A; 5D28 B; 1CSG A; 2LMS A; 4YQX A; 3WCY I; 3DUH C; 1Y6M L; 4Z5R D; 3BPO A; 2IL6 A; 1M4B A; 3NCC A; 3QT2 C; 1HUW A; 1HGU A; 5D71 A; 2E9W C; 5D70 A; 1BGE A; 1PVH B; 2KZ1 A; 3PIW A; 1AXI A; 1EXZ A; 2B8Y A; 3DLQ I; 1BP3 A; 3PIV A; 1QVN A; 2L3Y A; 4YDY I; 2D9Q A; 1HWH A; 4J4L C; 1GA3 A; 3OQ3 A; 3Q1S I; 1BBN A; 3G6D A; 1SCF A; 4RS1 A; 2B8Z A; 1BGC A; 3D87 A; 2ERJ D; 1RW5 A; 1HUL A; 2B8U A; 1CYL A; 1M49 A; 2CYK A; 5L6Y C; 3LB6 B; 4DOH A; 1ITM A; 1B5L A; 1ITI A; 1M47 A; 1IJZ A; 1CN4 C; 1V7M V; 1AU1 A; 4YPG C; 3VA2 A; 2HYM B; 3HHR A; 4ZF7 A; 1BUY A; 3L5X A; 3MZG A; 4YUE C; 3UF5 A; 1Y6K L; 1N1F A; 4NEJ A; 4MHL A; 3B5K A; 1M4A A; 2L3O A; 3LB6 A; 3G9V B; 3UF2 A; 5D22 A; 4FA8 E; 3UEZ E; 1M4C A; 1LKI A; 3NCF A; 1IK0 A; 1RFB A; 1KF9 A; 4O6K A; 2O26 A; 1ALU A; 4NI9 A; 3HMX B; 1IAR A; 3EJJ A; 1BGD A; 5FHX A; 1CNT 1; 2H24 A; 4CNI C; 5LQB A; 2B8X A; 3BPL A; 1LQS L; 1EKU A; 4NKQ C; 1JLI A; 1V7N V; 1ETE A; 5D72 A; 1BCN A; 1PY2 A; 1F45 B; 2B90 A; 1LK3 A; 3EW3 A; #chains in the Genus database with same CATH topology 1PGR A; 3SE3 B; 1PV7 A; 4JR9 A; 3UX9 A; 3N0P A; 2INT A; 2Q14 A; 3NPZ A; 3D48 P; 3HOU D; 1WCM D; 3HOX D; 3S9D A; 4WRL B; 4XNI A; 3L5W I; 1I1R B; 1Y6N L; 2B91 A; 2JA8 D; 5KNH I; 1INR A; 4O9H A; 1GNC A; 5E4E A; 2Y5Y A; 3QAZ A; 4PS4 A; 1Z7C A; 4BBR D; 1WU3 I; 1F6F A; 1D9G A; 4XNJ A; 2O6I A; 2O27 A; 2PSM A; 4U4W A; 4U4V A; 5C7X A; 4QIQ A; 4YQX A; 5C44 D; 2IL6 A; 3QT2 C; 1HUW A; 5D71 A; 5D70 A; 1BGE A; 1PVH B; 1EXZ A; 2B8Y A; 2L3Y A; 4ZYR A; 4ZW9 A; 2D9Q A; 2B8Z A; 1BGC A; 2ERJ D; 2CFP A; 1HUL A; 4D2B A; 2CYK A; 1ITM A; 4IKV A; 1Y1V D; 3AYH A; 1IJZ A; 3IRH A; 4A93 D; 5EQG A; 2Z3Q A; 3L5X A; 4YUE C; 1Y6K L; 4TPH A; 4NEJ A; 3TGX B; 3HOZ D; 5D22 A; 4FA8 E; 1RFB A; 4GS7 A; 2B63 D; 1IAR A; 1BGD A; 1CNT 1; 4CNI C; 2B8X A; 3H0G D; 5D72 A; 1BCN A; 4EXP A; 1EVS A; 2GMF A; 4PYP A; 4U4T A; 4NN5 A; 2C35 A; 2LAG A; 5TS9 A; 3O7P A; 2Q98 A; 3QWR B; 5GXB A; 1A22 A; 1CD9 A; 1ITL A; 1Y14 A; 5FUC A; 3WCY I; 4D2D A; 3BPO A; 4IKY A; 3NCC A; 4D2C A; 4DKD A; 1QVN A; 1HWH A; 1GA3 A; 3Q1S I; 1PW4 A; 3I4M D; 4DOH A; 4A3B D; 4IU9 A; 4A3K D; 5C65 A; 4NN6 A; 2HYM B; 4ZF7 A; 3MZG A; 4BY1 D; 4IU8 A; 1M4A A; 5D6K A; 4W6V A; 2R7Z D; 1LKI A; 1IK0 A; 1ALU A; 4A3C D; 5C4X D; 2H24 A; 3BPL A; 1EKU A; 4NKQ C; 4IKX A; 1V7N V; 4A3M D; 1PY2 A; 1F45 B; 5A2O A; 2XQB A; 1FYH A; 3QB1 A; 3QB7 A; 1ITF A; 1HIJ A; 4LEP A; 2OQP A; 1VLK A; 4A3G D; 2Q7N B; 1Y1W D; 3FKI D; 2B5I A; 1ILK A; 3H3V E; 2R93 D; 1PW6 A; 2Z3R A; 3D85 C; 2R92 D; 4DKF A; 3SE4 B; 5IYD D; 1IL6 A; 4A3L D; 3DGC L; 1RCB A; 1EER A; 1D9C A; 1M48 A; 4X51 A; 1AX8 A; 4YBQ A; 4TPJ A; 1YKB A; 1A7M A; 3BES L; 3NCB A; 4ZWC A; 5D28 B; 3I4N D; 5D59 A; 4OH3 A; 5IP9 D; 2E9W C; 3PIW A; 2KZ1 A; 1AXI A; 3DLQ I; 2VUM D; 3PO2 D; 4J4L C; 3G6D A; 3WDO A; 1SCF A; 4RS1 A; 3D87 A; 1RW5 A; 2B8U A; 1CYL A; 1PV6 A; 5L6Y C; 3HOY D; 1B5L A; 1ITI A; 2JA6 D; 1CN4 C; 1V7M V; 1AU1 A; 3VA2 A; 3HHR A; 1BUY A; 4ZWB A; 4BBS D; 4MHL A; 3B5K A; 3NCF A; 5IYB D; 1KF9 A; 2CFQ A; 4O6K A; 4A3J D; 3EJJ A; 4A3I D; 5LQB A; 5D58 A; 3DI3 A; 1LQS L; 5EQI A; 4YB9 D; 1JLI A; 1ETE A; 2B90 A; 1LK3 A; 3EW3 A; 5C3E D; 4DKE A; 1P9M B; 3HHC A; 3PO3 D; 2D48 A; 4NI7 A; 3HOW D; 1NBP A; 1EMR A; 3INK C; 3OG4 A; 3N06 A; 5FLM D; 3OG6 A; 4A3E D; 1Z92 A; 4GBZ A; 4JRE A; 4I77 Z; 2V8N A; 5A2N A; 1IRL A; 4NEM A; 4UVM A; 4ZS7 A; 5IP7 D; 4LRL A; 3BPN A; 5EQH A; 1HZI A; 3NCE A; 2JA5 D; 1RHG A; 1J7V L; 1FG9 A; 3O7Q A; 4GRW A; 4EXN A; 1M4R A; 2ILK A; 1HIK A; 1HWG A; 4A3D D; 1CSG A; 2LMS A; 4TPG A; 3HOV D; 3DUH C; 5IYC D; 1Y6M L; 4Z5R D; 4J05 A; 1M4B A; 4NN7 A; 2JA7 D; 1HGU A; 4Q65 A; 3PIV A; 1BP3 A; 4YDY I; 4BY7 D; 4GC0 A; 2XUT A; 3OQ3 A; 1BBN A; 3DI2 A; 4JA3 A; 1M49 A; 3LB6 B; 4LDS A; 4IKW A; 1M47 A; 4OAA A; 4IKZ A; 4YPG C; 3UF5 A; 1N1F A; 4BXX D; 4GBY A; 2L3O A; 3LB6 A; 4DKC A; 3G9V B; 3UF2 A; 3UEZ E; 1M4C A; 2O26 A; 4NI9 A; 3HMX B; 5FHX A; 4APS A; 4A3F D; #chains in the Genus database with same CATH homology 1FYH A; 1PGR A; 3SE3 B; 4EXP A; 3QB1 A; 4DKE A; 1P9M B; 1EVS A; 3HHC A; 2GMF A; 3N0P A; 3UX9 A; 3PO3 D; 2D48 A; 3QB7 A; 2INT A; 4NI7 A; 1ITF A; 2Q14 A; 3HOW D; 1NBP A; 1EMR A; 3D48 P; 1HIJ A; 3NPZ A; 3HOU D; 1WCM D; 3HOX D; 3INK C; 4NN5 A; 3S9D A; 4WRL B; 3OG4 A; 2OQP A; 3N06 A; 5FLM D; 1VLK A; 3OG6 A; 4A3E D; 2C35 A; 3L5W I; 4A3G D; 2Q7N B; 1Y1W D; 3FKI D; 1I1R B; 1Z92 A; 2LAG A; 1Y6N L; 2B91 A; 2B5I A; 1ILK A; 2JA8 D; 5TS9 A; 3H3V E; 2R93 D; 5KNH I; 1INR A; 1PW6 A; 2Q98 A; 4I77 Z; 4O9H A; 1GNC A; 1IRL A; 2Z3R A; 4NEM A; 4ZS7 A; 5E4E A; 3D85 C; 3QWR B; 2R92 D; 4DKF A; 3QAZ A; 3SE4 B; 5IYD D; 5IP7 D; 4LRL A; 3BPN A; 1HZI A; 4PS4 A; 3NCE A; 1IL6 A; 2JA5 D; 4A3L D; 1RHG A; 3DGC L; 1A22 A; 1J7V L; 1RCB A; 1EER A; 1FG9 A; 1WU3 I; 1F6F A; 1Z7C A; 4BBR D; 4GRW A; 1D9G A; 1D9C A; 1M48 A; 4X51 A; 1AX8 A; 1CD9 A; 1ITL A; 1M4R A; 1YKB A; 2O6I A; 2O27 A; 1Y14 A; 2PSM A; 3BES L; 2ILK A; 3NCB A; 1A7M A; 5FUC A; 1HIK A; 5C7X A; 1HWG A; 4A3D D; 5D28 B; 1CSG A; 2LMS A; 4YQX A; 3WCY I; 3I4N D; 3HOV D; 3DUH C; 5IYC D; 1Y6M L; 5C44 D; 4Z5R D; 3BPO A; 5IP9 D; 2IL6 A; 1M4B A; 3NCC A; 4NN7 A; 2JA7 D; 3QT2 C; 1HUW A; 1HGU A; 5D71 A; 2E9W C; 5D70 A; 4DKD A; 1BGE A; 1PVH B; 2KZ1 A; 3PIW A; 1AXI A; 1EXZ A; 2B8Y A; 3DLQ I; 1BP3 A; 3PIV A; 1QVN A; 2L3Y A; 2VUM D; 4YDY I; 3PO2 D; 4BY7 D; 2D9Q A; 1HWH A; 4J4L C; 1GA3 A; 3OQ3 A; 3Q1S I; 1BBN A; 3G6D A; 1SCF A; 4RS1 A; 2B8Z A; 3DI2 A; 1BGC A; 3D87 A; 3I4M D; 2ERJ D; 1RW5 A; 1HUL A; 2B8U A; 1CYL A; 1M49 A; 2CYK A; 5L6Y C; 3LB6 B; 4DOH A; 1ITM A; 1B5L A; 3HOY D; 4A3B D; 4EXN A; 1ITI A; 1M47 A; 1Y1V D; 3AYH A; 2JA6 D; 1IJZ A; 3IRH A; 4A3K D; 4A93 D; 1CN4 C; 2Z3Q A; 1V7M V; 1AU1 A; 4NN6 A; 4YPG C; 2HYM B; 3HHR A; 3VA2 A; 4ZF7 A; 1BUY A; 3L5X A; 3MZG A; 4YUE C; 3UF5 A; 1Y6K L; 4BY1 D; 1N1F A; 4NEJ A; 4BXX D; 4BBS D; 4MHL A; 3B5K A; 1M4A A; 2L3O A; 3LB6 A; 3TGX B; 4DKC A; 3G9V B; 5C3E D; 3UF2 A; 3HOZ D; 5D22 A; 2R7Z D; 4FA8 E; 3UEZ E; 1M4C A; 1LKI A; 3NCF A; 1IK0 A; 1RFB A; 5IYB D; 1KF9 A; 4O6K A; 2O26 A; 1ALU A; 4NI9 A; 3HMX B; 4GS7 A; 2B63 D; 4A3C D; 1IAR A; 3EJJ A; 4A3J D; 5C4X D; 1BGD A; 5FHX A; 1CNT 1; 2H24 A; 4A3I D; 4CNI C; 5LQB A; 2B8X A; 3H0G D; 3BPL A; 3DI3 A; 1LQS L; 4A3F D; 1EKU A; 4NKQ C; 1JLI A; 1V7N V; 1ETE A; 5D72 A; 4A3M D; 1PY2 A; 1BCN A; 1F45 B; 2B90 A; 1LK3 A; 3EW3 A; 2XQB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
