3H0GD

Rna polymerase ii from schizosaccharomyces pombe
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
130
structure length
130
Chain Sequence
FEEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEIPMTDVMKKTVAYFNVFARFKTAEATYACERILGNRFHKFERAQLGTLCCEDAEEARTLIPSLANKIDDQNLQGILDELSTLRKFQD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase II subunit rpb1
molecule tags Transcription
total genus 32
structure length 130
sequence length 130
chains with identical sequence P
ec nomenclature
pdb deposition date 2009-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 3h0gD00
4A3KD 2R7ZD 2JA8D 4BBRD 4A3CD 2JA6D 4BXXD 1Y14A 5IP9D 4A93D 3PO3D 4A3BD 4BY1D 2JA5D 4BBSD 4A3GD 3PO2D 3HOWD 4A3LD 5C3ED 2VUMD 2JA7D 4A3JD 3HOYD 3AYHA 1WCMD 5IYCD 3HOXD 3HOZD 2B63D 4A3DD 2R92D 2R93D 4A3FD 5C44D 4BY7D 3HOVD 1Y1VD 4A3MD 5C4XD 3FKID 5IYBD 5IYDD 3I4MD 5FLMD 5IP7D 4A3ID 3H3VE 1Y1WD 3H0GD 2C35A 3I4ND 4A3ED 3HOUD
chains in the Genus database with same CATH superfamily
1BUYA 4D2DA 2JA6D 3LB6A 1D9GA 2V8NA 4GRWA 3TGXB 1HZIA 2VUMD 3NCEA 3D87A 4A3DD 2CFQA 1CSGA 3QT2C 4YBQA 3FKID 5IYBD 3HMXB 4NKQC 4GS7A 5A2NA 3N0PA 1HUWA 4LEPA 4YQXA 3UX9A 2ERJD 4A3KD 2JA8D 4YUEC 3SE3B 1BGCA 2L3YA 1IK0A 1N1FA 4NEJA 2B8ZA 3QWRB 2R93D 3O7PA 5D28B 4LDSA 1BGDA 4A3ED 5EQHA 1AXIA 2B91A 2OQPA 2ILKA 4A93D 2B90A 4D2CA 4BY1D 3N06A 3PO2D 1FG9A 2JA7D 4JREA 1V7MV 4OAAA 1EVSA 4J4LC 1M49A 1GNCA 1I1RB 2HYMB 5D72A 4A3ID 4NEMA 1CN4C 4Q65A 4LRLA 4ZWCA 3BESL 3NCCA 3DUHC 1JLIA 1F45B 1RFBA 1P9MB 4A3JD 3HOYD 3HOXD 5C7XA 1VLKA 4BY7D 1HWGA 1A22A 2O26A 3Q1SI 1CNT1 3UF5A 1CYLA 3S9DA 1Y14A 4ZWBA 3MZGA 2CFPA 4JA3A 1GA3A 3G6DA 5GXBA 1Y1WD 2C35A 3OQ3A 1INRA 1J7VL 1YKBA 4BBSD 1PW4A 5C3ED 2L3OA 4IU9A 1LQSL 3INKC 4U4VA 5D22A 1Z7CA 4GBZA 5C44D 5A2OA 4IKXA 2B8UA 1IJZA 5D58A 5EQIA 5C65A 4NI9A 1AU1A 2B8XA 1EERA 4YDYI 5IP9D 1BGEA 4RS1A 2B5IA 1KF9A 3HHRA 4IKVA 5FHXA 1IL6A 4DOHA 4JR9A 3BPOA 4D2BA 4QIQA 4ZYRA 5LQBA 4U4WA 1HWHA 3H0GD 1PV6A 5D71A 2R7ZD 4WRLB 1ITLA 2JA5D 1BP3A 4EXPA 2PSMA 4PS4A 1HIKA 5IYCD 1PV7A 3L5XA 4A3FD 4ZW9A 1BCNA 3NCBA 2INTA 1M4RA 2XUTA 4PYPA 3D85C 1CD9A 3EJJA 3NCFA 3PIWA 4TPHA 5KNHI 3OG6A 5FUCA 4GBYA 2CYKA 3I4ND 4IKYA 2GMFA 4DKCA 4IKWA 4BBRD 4XNIA 3DGCL 3VA2A 5TS9A 4NI7A 2B8YA 1IARA 4O9HA 1WU3I 1EKUA 1WCMD 5L6YC 2R92D 1LK3A 3G9VB 2IL6A 3WCYI 2Z3QA 1PGRA 3D48P 4NN7A 3PO3D 4EXNA 1ETEA 4IU8A 4CNIC 3DI2A 3AYHA 1ITFA 1EXZA 3HOZD 2B63D 3L5WI 4I77Z 3PIVA 1PY2A 4YPGC 4GC0A 2LAGA 5IP7D 3H3VE 3QB1A 4YB9D 1M48A 1RW5A 4XNJA 2Q14A 3UEZE 4BXXD 1HGUA 4A3BD 1QVNA 1PW6A 3QB7A 4O6KA 5E4EA 4NN6A 3O7QA 5D70A 4IKZA 3OG4A 1ILKA 3IRHA 2O6IA 3HOUD 3WDOA 1Z92A 4U4TA 3HHCA 1V7NV 1A7MA 2Q98A 4DKFA 2O27A 1BBNA 1Y6NL 3SE4B 1HULA 4ZS7A 1ITIA 4TPGA 4DKEA 3NPZA 3BPNA 1FYHA 5EQGA 4A3MD 4DKDA 2E9WC 2LMSA 2H24A 4APSA 4A3CD 3LB6B 4A3LD 4TPJA 1IRLA 1M4CA 2XQBA 3DLQI 3BPLA 1Y6ML 1RCBA 2Q7NB 3B5KA 1RHGA 1Y6KL 4ZF7A 3HOWD 1M47A 1F6FA 1EMRA 5D59A 4W6VA 2D48A 1M4BA 1LKIA 1D9CA 4X51A 1NBPA 1Y1VD 4J05A 1ITMA 1HIJA 1AX8A 2Z3RA 1SCFA 4MHLA 4Z5RD 3DI3A 2Y5YA 4A3GD 4NN5A 3QAZA 2D9QA 3UF2A 1PVHB 4OH3A 1M4AA 4FA8E 1B5LA 5D6KA 3EW3A 2KZ1A 3HOVD 5C4XD 1ALUA 5IYDD 3I4MD 5FLMD 4UVMA
chains in the Genus database with same CATH topology
1BUYA 1CNT1 3UF5A 3NCBA 1Z92A 1CYLA 2JA6D 2INTA 1Y14A 3S9DA 3LB6A 3HHCA 1D9GA 1M4RA 1V7NV 4GRWA 3TGXB 1A7MA 3D85C 2Q98A 1HZIA 1CD9A 2VUMD 3EJJA 3MZGA 4DKFA 3NCFA 3PIWA 2O27A 1BBNA 3NCEA 1Y6NL 5KNHI 3SE4B 1GA3A 1HULA 3D87A 4ZS7A 4A3DD 1CSGA 3OG6A 3QT2C 4DKEA 1ITIA 3NPZA 3BPNA 1FYHA 3G6DA 5FUCA 4A3MD 3FKID 5IYBD 4DKDA 3HMXB 4NKQC 4GS7A 1Y1WD 2CYKA 2C35A 3I4ND 2E9WC 2LMSA 3N0PA 1HUWA 1INRA 1J7VL 3OQ3A 4YQXA 3UX9A 2ERJD 2GMFA 2H24A 4DKCA 4A3KD 2JA8D 4YUEC 4BBRD 3SE3B 4A3CD 3DGCL 3VA2A 5TS9A 1YKBA 4NI7A 4BBSD 2B8YA 3LB6B 4A3LD 1BGCA 1IARA 2L3YA 5C3ED 2L3OA 4O9HA 1LQSL 3INKC 1WU3I 1EKUA 5D22A 1Z7CA 1IK0A 1WCMD 1N1FA 5L6YC 1IRLA 1M4CA 2XQBA 3DLQI 4NEJA 3BPLA 2B8ZA 1LK3A 3G9VB 3QWRB 5C44D 2R92D 2R93D 1Y6ML 5D28B 2IL6A 3WCYI 2Z3QA 1BGDA 2B8UA 1RCBA 1IJZA 4A3ED 1AXIA 1PGRA 4NI9A 1AU1A 2B8XA 2B91A 2OQPA 1EERA 2Q7NB 3B5KA 1RHGA 3D48P 1Y6KL 2ILKA 4NN7A 4YDYI 4ZF7A 5IP9D 4A93D 3PO3D 1BGEA 2B90A 4BY1D 3N06A 3PO2D 3HOWD 4EXNA 4RS1A 1ETEA 2B5IA 1FG9A 1KF9A 1M47A 1F6FA 3HHRA 4CNIC 2JA7D 1V7MV 5FHXA 3DI2A 1IL6A 1EMRA 4DOHA 3AYHA 3BPOA 1ITFA 1EVSA 1EXZA 4J4LC 2D48A 3HOZD 1M4BA 1M49A 3L5WI 1LKIA 4I77Z 2B63D 1GNCA 1I1RB 1D9CA 3PIVA 4X51A 5LQBA 1PY2A 2HYMB 1NBPA 1Y1VD 4YPGC 1ITMA 1HIJA 2LAGA 5D72A 1HWHA 3QB1A 1CN4C 4NEMA 5IP7D 3H0GD 1M48A 4A3ID 3H3VE 1RW5A 5D71A 1AX8A 4LRLA 2R7ZD 2Q14A 2Z3RA 4WRLB 1ITLA 3BESL 3UEZE 4BXXD 1SCFA 4MHLA 1HGUA 4Z5RD 4A3BD 3NCCA 3DI3A 1QVNA 1BP3A 1PW6A 3DUHC 3QB7A 4NN5A 2JA5D 3QAZA 2D9QA 2PSMA 3UF2A 4EXPA 1PVHB 4O6KA 4PS4A 1JLIA 4NN6A 1M4AA 1HIKA 5D70A 1F45B 1RFBA 5E4EA 3OG4A 1P9MB 4A3JD 3HOYD 4FA8E 1ILKA 1B5LA 5IYCD 3HOXD 5C7XA 3L5XA 1VLKA 3EW3A 4A3FD 2KZ1A 4BY7D 3HOVD 3IRHA 5C4XD 2O6IA 1ALUA 5IYDD 1HWGA 3I4MD 5FLMD 1A22A 2O26A 3Q1SI 1BCNA 3HOUD 4A3GD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A3K D;  2R7Z D;  2JA8 D;  4BBR D;  4A3C D;  2JA6 D;  4BXX D;  1Y14 A;  5IP9 D;  4A93 D;  3PO3 D;  4A3B D;  4BY1 D;  2JA5 D;  4BBS D;  4A3G D;  3PO2 D;  3HOW D;  4A3L D;  5C3E D;  2VUM D;  2JA7 D;  4A3J D;  3HOY D;  3AYH A;  1WCM D;  5IYC D;  3HOX D;  3HOZ D;  2B63 D;  4A3D D;  2R92 D;  2R93 D;  4A3F D;  5C44 D;  4BY7 D;  3HOV D;  1Y1V D;  4A3M D;  5C4X D;  3FKI D;  5IYB D;  5IYD D;  3I4M D;  5FLM D;  5IP7 D;  4A3I D;  3H3V E;  1Y1W D;  3H0G D;  2C35 A;  3I4N D;  4A3E D;  3HOU D; 
#chains in the Genus database with same CATH topology
 1BUY A;  4D2D A;  2JA6 D;  3LB6 A;  1D9G A;  2V8N A;  4GRW A;  3TGX B;  1HZI A;  2VUM D;  3NCE A;  3D87 A;  4A3D D;  2CFQ A;  1CSG A;  3QT2 C;  4YBQ A;  3FKI D;  5IYB D;  3HMX B;  4NKQ C;  4GS7 A;  5A2N A;  3N0P A;  1HUW A;  4LEP A;  4YQX A;  3UX9 A;  2ERJ D;  4A3K D;  2JA8 D;  4YUE C;  3SE3 B;  1BGC A;  2L3Y A;  1IK0 A;  1N1F A;  4NEJ A;  2B8Z A;  3QWR B;  2R93 D;  3O7P A;  5D28 B;  4LDS A;  1BGD A;  4A3E D;  5EQH A;  1AXI A;  2B91 A;  2OQP A;  2ILK A;  4A93 D;  2B90 A;  4D2C A;  4BY1 D;  3N06 A;  3PO2 D;  1FG9 A;  2JA7 D;  4JRE A;  1V7M V;  4OAA A;  1EVS A;  4J4L C;  1M49 A;  1GNC A;  1I1R B;  2HYM B;  5D72 A;  4A3I D;  4NEM A;  1CN4 C;  4Q65 A;  4LRL A;  4ZWC A;  3BES L;  3NCC A;  3DUH C;  1JLI A;  1F45 B;  1RFB A;  1P9M B;  4A3J D;  3HOY D;  3HOX D;  5C7X A;  1VLK A;  4BY7 D;  1HWG A;  1A22 A;  2O26 A;  3Q1S I;  1CNT 1;  3UF5 A;  1CYL A;  3S9D A;  1Y14 A;  4ZWB A;  3MZG A;  2CFP A;  4JA3 A;  1GA3 A;  3G6D A;  5GXB A;  1Y1W D;  2C35 A;  3OQ3 A;  1INR A;  1J7V L;  1YKB A;  4BBS D;  1PW4 A;  5C3E D;  2L3O A;  4IU9 A;  1LQS L;  3INK C;  4U4V A;  5D22 A;  1Z7C A;  4GBZ A;  5C44 D;  5A2O A;  4IKX A;  2B8U A;  1IJZ A;  5D58 A;  5EQI A;  5C65 A;  4NI9 A;  1AU1 A;  2B8X A;  1EER A;  4YDY I;  5IP9 D;  1BGE A;  4RS1 A;  2B5I A;  1KF9 A;  3HHR A;  4IKV A;  5FHX A;  1IL6 A;  4DOH A;  4JR9 A;  3BPO A;  4D2B A;  4QIQ A;  4ZYR A;  5LQB A;  4U4W A;  1HWH A;  3H0G D;  1PV6 A;  5D71 A;  2R7Z D;  4WRL B;  1ITL A;  2JA5 D;  1BP3 A;  4EXP A;  2PSM A;  4PS4 A;  1HIK A;  5IYC D;  1PV7 A;  3L5X A;  4A3F D;  4ZW9 A;  1BCN A;  3NCB A;  2INT A;  1M4R A;  2XUT A;  4PYP A;  3D85 C;  1CD9 A;  3EJJ A;  3NCF A;  3PIW A;  4TPH A;  5KNH I;  3OG6 A;  5FUC A;  4GBY A;  2CYK A;  3I4N D;  4IKY A;  2GMF A;  4DKC A;  4IKW A;  4BBR D;  4XNI A;  3DGC L;  3VA2 A;  5TS9 A;  4NI7 A;  2B8Y A;  1IAR A;  4O9H A;  1WU3 I;  1EKU A;  1WCM D;  5L6Y C;  2R92 D;  1LK3 A;  3G9V B;  2IL6 A;  3WCY I;  2Z3Q A;  1PGR A;  3D48 P;  4NN7 A;  3PO3 D;  4EXN A;  1ETE A;  4IU8 A;  4CNI C;  3DI2 A;  3AYH A;  1ITF A;  1EXZ A;  3HOZ D;  2B63 D;  3L5W I;  4I77 Z;  3PIV A;  1PY2 A;  4YPG C;  4GC0 A;  2LAG A;  5IP7 D;  3H3V E;  3QB1 A;  4YB9 D;  1M48 A;  1RW5 A;  4XNJ A;  2Q14 A;  3UEZ E;  4BXX D;  1HGU A;  4A3B D;  1QVN A;  1PW6 A;  3QB7 A;  4O6K A;  5E4E A;  4NN6 A;  3O7Q A;  5D70 A;  4IKZ A;  3OG4 A;  1ILK A;  3IRH A;  2O6I A;  3HOU D;  3WDO A;  1Z92 A;  4U4T A;  3HHC A;  1V7N V;  1A7M A;  2Q98 A;  4DKF A;  2O27 A;  1BBN A;  1Y6N L;  3SE4 B;  1HUL A;  4ZS7 A;  1ITI A;  4TPG A;  4DKE A;  3NPZ A;  3BPN A;  1FYH A;  5EQG A;  4A3M D;  4DKD A;  2E9W C;  2LMS A;  2H24 A;  4APS A;  4A3C D;  3LB6 B;  4A3L D;  4TPJ A;  1IRL A;  1M4C A;  2XQB A;  3DLQ I;  3BPL A;  1Y6M L;  1RCB A;  2Q7N B;  3B5K A;  1RHG A;  1Y6K L;  4ZF7 A;  3HOW D;  1M47 A;  1F6F A;  1EMR A;  5D59 A;  4W6V A;  2D48 A;  1M4B A;  1LKI A;  1D9C A;  4X51 A;  1NBP A;  1Y1V D;  4J05 A;  1ITM A;  1HIJ A;  1AX8 A;  2Z3R A;  1SCF A;  4MHL A;  4Z5R D;  3DI3 A;  2Y5Y A;  4A3G D;  4NN5 A;  3QAZ A;  2D9Q A;  3UF2 A;  1PVH B;  4OH3 A;  1M4A A;  4FA8 E;  1B5L A;  5D6K A;  3EW3 A;  2KZ1 A;  3HOV D;  5C4X D;  1ALU A;  5IYD D;  3I4M D;  5FLM D;  4UVM A; 
#chains in the Genus database with same CATH homology
 1BUY A;  1CNT 1;  3UF5 A;  3NCB A;  1Z92 A;  1CYL A;  2JA6 D;  2INT A;  1Y14 A;  3S9D A;  3LB6 A;  3HHC A;  1D9G A;  1M4R A;  1V7N V;  4GRW A;  3TGX B;  1A7M A;  3D85 C;  2Q98 A;  1HZI A;  1CD9 A;  2VUM D;  3EJJ A;  3MZG A;  4DKF A;  3NCF A;  3PIW A;  2O27 A;  1BBN A;  3NCE A;  1Y6N L;  5KNH I;  3SE4 B;  1GA3 A;  1HUL A;  3D87 A;  4ZS7 A;  4A3D D;  1CSG A;  3OG6 A;  3QT2 C;  4DKE A;  1ITI A;  3NPZ A;  3BPN A;  1FYH A;  3G6D A;  5FUC A;  4A3M D;  3FKI D;  5IYB D;  4DKD A;  3HMX B;  4NKQ C;  4GS7 A;  1Y1W D;  2CYK A;  2C35 A;  3I4N D;  2E9W C;  2LMS A;  3N0P A;  1HUW A;  1INR A;  1J7V L;  3OQ3 A;  4YQX A;  3UX9 A;  2ERJ D;  2GMF A;  2H24 A;  4DKC A;  4A3K D;  2JA8 D;  4YUE C;  4BBR D;  3SE3 B;  4A3C D;  3DGC L;  3VA2 A;  5TS9 A;  1YKB A;  4NI7 A;  4BBS D;  2B8Y A;  3LB6 B;  4A3L D;  1BGC A;  1IAR A;  2L3Y A;  5C3E D;  2L3O A;  4O9H A;  1LQS L;  3INK C;  1WU3 I;  1EKU A;  5D22 A;  1Z7C A;  1IK0 A;  1WCM D;  1N1F A;  5L6Y C;  1IRL A;  1M4C A;  2XQB A;  3DLQ I;  4NEJ A;  3BPL A;  2B8Z A;  1LK3 A;  3G9V B;  3QWR B;  5C44 D;  2R92 D;  2R93 D;  1Y6M L;  5D28 B;  2IL6 A;  3WCY I;  2Z3Q A;  1BGD A;  2B8U A;  1RCB A;  1IJZ A;  4A3E D;  1AXI A;  1PGR A;  4NI9 A;  1AU1 A;  2B8X A;  2B91 A;  2OQP A;  1EER A;  2Q7N B;  3B5K A;  1RHG A;  3D48 P;  1Y6K L;  2ILK A;  4NN7 A;  4YDY I;  4ZF7 A;  5IP9 D;  4A93 D;  3PO3 D;  1BGE A;  2B90 A;  4BY1 D;  3N06 A;  3PO2 D;  3HOW D;  4EXN A;  4RS1 A;  1ETE A;  2B5I A;  1FG9 A;  1KF9 A;  1M47 A;  1F6F A;  3HHR A;  4CNI C;  2JA7 D;  1V7M V;  5FHX A;  3DI2 A;  1IL6 A;  1EMR A;  4DOH A;  3AYH A;  3BPO A;  1ITF A;  1EVS A;  1EXZ A;  4J4L C;  2D48 A;  3HOZ D;  1M4B A;  1M49 A;  3L5W I;  1LKI A;  4I77 Z;  2B63 D;  1GNC A;  1I1R B;  1D9C A;  3PIV A;  4X51 A;  5LQB A;  1PY2 A;  2HYM B;  1NBP A;  1Y1V D;  4YPG C;  1ITM A;  1HIJ A;  2LAG A;  5D72 A;  1HWH A;  3QB1 A;  1CN4 C;  4NEM A;  5IP7 D;  3H0G D;  1M48 A;  4A3I D;  3H3V E;  1RW5 A;  5D71 A;  1AX8 A;  4LRL A;  2R7Z D;  2Q14 A;  2Z3R A;  4WRL B;  1ITL A;  3BES L;  3UEZ E;  4BXX D;  1SCF A;  4MHL A;  1HGU A;  4Z5R D;  4A3B D;  3NCC A;  3DI3 A;  1QVN A;  1BP3 A;  1PW6 A;  3DUH C;  3QB7 A;  4NN5 A;  2JA5 D;  3QAZ A;  2D9Q A;  2PSM A;  3UF2 A;  4EXP A;  1PVH B;  4O6K A;  4PS4 A;  1JLI A;  4NN6 A;  1M4A A;  1HIK A;  5D70 A;  1F45 B;  1RFB A;  5E4E A;  3OG4 A;  1P9M B;  4A3J D;  3HOY D;  4FA8 E;  1ILK A;  1B5L A;  5IYC D;  3HOX D;  5C7X A;  3L5X A;  1VLK A;  3EW3 A;  4A3F D;  2KZ1 A;  4BY7 D;  3HOV D;  3IRH A;  5C4X D;  2O6I A;  1ALU A;  5IYD D;  1HWG A;  3I4M D;  5FLM D;  1A22 A;  2O26 A;  3Q1S I;  1BCN A;  3HOU D;  4A3G D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...