2B63D

Complete rna polymerase ii-rna inhibitor complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
218
structure length
177
Chain Sequence
b'STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 31-MER
publication title Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Transferase/rna
total genus 39
structure length 177
sequence length 218
ec nomenclature
pdb deposition date 2005-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 2b63D02
2VUMD 2B63D 4BBRD 5IP7D 2JA7D 2C35A 2R92D 4A3BD 4A3DD 3H0GD 3HOWD 5C3ED 5C4XD 3HOZD 4A3FD 4A3MD 3HOXD 5IYCD 5IYDD 4A3CD 4A3GD 5FLMD 5C44D 3FKID 2R93D 4A3KD 4BY7D 1Y1VD 3PO3D 5IP9D 3I4ND 3PO2D 3AYHA 1WCMD 3H3VE 3HOUD 4BBSD 2R7ZD 4A3ID 2JA8D 4A93D 5IYBD 3I4MD 1Y14A 1Y1WD 2JA5D 3HOYD 4A3JD 3HOVD 4BY1D 4A3ED 4A3LD 4BXXD 2JA6D
chains in the Genus database with same CATH superfamily
5A2NA 5IP7D 1IARA 5D59A 1M4CA 5EQHA 5L6YC 4ZF7A 4GC0A 4YPGC 2Q14A 1A7MA 3PO2D 3I4ND 1ALUA 4Z5RD 1JLIA 2O27A 3NCFA 2JA8D 1HULA 2O6IA 3I4MD 3MZGA 2HYMB 4IKVA 4LRLA 1PV7A 1Y6ML 4TPJA 4ZWBA 1INRA 3D48P 2H24A 1M48A 2JA7D 4NN6A 1PW6A 3BPNA 3DLQI 2PSMA 1BBNA 2D9QA 5C3ED 2XUTA 1CN4C 1IRLA 1D9GA 4FA8E 1Y6NL 3S9DA 4A3ID 1HUWA 1EMRA 1BGDA 1IL6A 4BXXD 3G6DA 2JA6D 3UEZE 3TGXB 2B63D 4JA3A 3WCYI 5D28B 3VA2A 5C4XD 1EKUA 5IYCD 5C65A 3DGCL 1HIJA 2Z3RA 4OH3A 1Y1WD 4YQXA 4DKFA 1YKBA 5FHXA 3DI2A 2B8XA 4A3CD 3B5KA 4NKQC 5IYBD 1CD9A 3LB6B 4NN5A 1FYHA 4NEJA 1HZIA 2O26A 3O7QA 3HOZD 2INTA 3HHRA 4BY7D 1P9MB 3HOUD 3PIWA 3HMXB 1RW5A 5E4EA 4A3ED 1F6FA 3QWRB 4DKEA 1IK0A 3NCCA 2B91A 4A3BD 1AX8A 2IL6A 1D9CA 1Y1VD 4CNIC 1V7MV 4TPHA 3DUHC 4YBQA 4NI7A 3OQ3A 5KNHI 4GS7A 3BPOA 1N1FA 4DKCA 1GNCA 2B8ZA 4JREA 1Y6KL 3WDOA 3LB6A 3PIVA 5FLMD 3Q1SI 4DKDA 3L5XA 1HWHA 2L3YA 5D70A 1LK3A 3DI3A 3BPLA 1ILKA 2VUMD 2Y5YA 1RHGA 4A3DD 1ITIA 1BGEA 1EVSA 3D87A 4U4VA 4JR9A 4I77Z 3UF2A 3H3VE 4O9HA 5TS9A 4TPGA 2JA5D 3HOYD 1V7NV 4IU8A 5D58A 1M49A 1ITLA 4PYPA 2Q7NB 1I1RB 4UVMA 4DOHA 1VLKA 1F45B 4YUEC 4A3JD 4BY1D 1B5LA 5D22A 1NBPA 4U4TA 4IU9A 1FG9A 2C35A 3IRHA 2Q98A 3HOWD 5D72A 4A3GD 4IKXA 5IYDD 2R93D 1PW4A 4A3KD 4U4WA 4APSA 4MHLA 4YB9D 1PV6A 1SCFA 5LQBA 3QAZA 3QB7A 1KF9A 1Y14A 1BGCA 1CNT1 4Q65A 5EQGA 4A3LD 2CYKA 2OQPA 3G9VB 1Z92A 3H0GD 1WU3I 2ILKA 1HGUA 1M4AA 2LAGA 3NCBA 4ZS7A 1IJZA 4BBSD 2R7ZD 1CYLA 4GBZA 4EXNA 1ITFA 2CFQA 4W6VA 2V8NA 2B5IA 3HOVD 3EJJA 3QB1A 4XNJA 1HWGA 4LEPA 1QVNA 2B8UA 2B8YA 1CSGA 1LKIA 4NEMA 3HHCA 3NPZA 4EXPA 3AYHA 3OG4A 3SE3B 1M4RA 2E9WC 5D71A 1GA3A 4GBYA 2KZ1A 1AU1A 5C7XA 1LQSL 1PGRA 4NI9A 2B90A 4BBRD 4O6KA 2D48A 3L5WI 4IKZA 5A2OA 4D2DA 5FUCA 3PO3D 3BESL 3EW3A 3OG6A 4A93D 4IKWA 2GMFA 4RS1A 3NCEA 3SE4B 2L3OA 4NN7A 1A22A 1BCNA 4QIQA 4ZYRA 2ERJD 5D6KA 4A3FD 1M47A 5C44D 1M4BA 5IP9D 2Z3QA 4GRWA 4J05A 4D2BA 1PVHB 1RFBA 1HIKA 4X51A 2XQBA 1PY2A 1ITMA 1BUYA 2R92D 3N0PA 1BP3A 3UX9A 3FKID 4IKYA 3INKC 1WCMD 2LMSA 1J7VL 3UF5A 4YDYI 1AXIA 4WRLB 1EERA 4XNIA 2CFPA 4LDSA 4A3MD 3HOXD 4D2CA 4ZWCA 3D85C 3QT2C 4PS4A 1EXZA 5GXBA 4J4LC 1ETEA 4ZW9A 3N06A 4OAAA 1RCBA 5EQIA 1Z7CA 3O7PA
chains in the Genus database with same CATH topology
4BBRD 5IP7D 1IARA 1HZIA 4O6KA 1A7MA 2D48A 3L5WI 1M49A 1M4CA 2O26A 1ITLA 3HOZD 2INTA 5L6YC 5FUCA 4ZF7A 4YPGC 2Q14A 3HHRA 2Q7NB 1P9MB 4BY7D 1I1RB 3BESL 1ALUA 3I4ND 3PO2D 3PO3D 3EW3A 4Z5RD 1JLIA 3OG6A 3HOUD 2O27A 4DOHA 3NCFA 2JA8D 1HULA 3PIWA 4A93D 1VLKA 2O6IA 3HMXB 3I4MD 2GMFA 1F45B 2HYMB 1RW5A 3MZGA 5E4EA 4LRLA 4YUEC 4A3JD 4RS1A 4BY1D 3NCEA 1B5LA 1Y6ML 3SE4B 5D22A 4A3ED 2L3OA 4NN7A 1F6FA 1NBPA 1INRA 3D48P 3QWRB 4DKEA 1A22A 2H24A 1IK0A 1BCNA 1M48A 3NCCA 1FG9A 2JA7D 2C35A 4NN6A 3IRHA 1PW6A 2B91A 4A3BD 1AX8A 3BPNA 3DLQI 2ERJD 2Q98A 2PSMA 1BBNA 2D9QA 5C3ED 3HOWD 5D72A 1CN4C 1IRLA 4A3FD 4A3GD 5IYDD 2IL6A 1M47A 5C44D 2R93D 1M4BA 4A3KD 1D9CA 1Y1VD 5IP9D 2Z3QA 1V7MV 4CNIC 1D9GA 4MHLA 4GRWA 4FA8E 1SCFA 1Y6NL 3S9DA 3DUHC 5LQBA 1HUWA 4A3ID 1EMRA 3QAZA 3OQ3A 3QB7A 1KF9A 4NI7A 1PVHB 1Y14A 1BGCA 5KNHI 4GS7A 1BGDA 1CNT1 1RFBA 1HIKA 4X51A 2XQBA 1PY2A 4A3LD 3BPOA 1IL6A 1ITMA 4BXXD 3G6DA 2JA6D 3UEZE 2CYKA 2OQPA 1N1FA 3TGXB 2B63D 1BUYA 4DKCA 3G9VB 1Z92A 2R92D 1GNCA 3H0GD 1WU3I 2B8ZA 5D28B 3WCYI 2ILKA 3VA2A 5C4XD 1EKUA 1Y6KL 3N0PA 1HGUA 1M4AA 1BP3A 2LAGA 3LB6A 3NCBA 3PIVA 3UX9A 4ZS7A 1IJZA 5IYCD 3FKID 5FLMD 3INKC 3Q1SI 1WCMD 3DGCL 4DKDA 2LMSA 1J7VL 3L5XA 1HWHA 4BBSD 2L3YA 2R7ZD 1CYLA 4EXNA 1HIJA 2Z3RA 5D70A 3UF5A 1ITFA 1LK3A 2B5IA 1Y1WD 3HOVD 3DI3A 3EJJA 4YDYI 4YQXA 3QB1A 4DKFA 3BPLA 1HWGA 1AXIA 1ILKA 1YKBA 2VUMD 5FHXA 1QVNA 4WRLB 3DI2A 1RHGA 4A3DD 1EERA 2B8UA 1ITIA 2B8YA 2B8XA 1CSGA 1BGEA 1LKIA 4NEMA 3HOXD 4A3MD 4A3CD 1EVSA 3D87A 3HHCA 3NPZA 4EXPA 3D85C 3QT2C 4I77Z 3B5KA 3AYHA 3OG4A 4PS4A 3UF2A 3SE3B 3H3VE 1EXZA 4O9HA 5TS9A 1M4RA 2E9WC 4NKQC 4J4LC 5IYBD 5D71A 1ETEA 1GA3A 2JA5D 3HOYD 1CD9A 3N06A 3LB6B 2KZ1A 1AU1A 4NN5A 1V7NV 5C7XA 1FYHA 1RCBA 4NEJA 1LQSL 1Z7CA 1PGRA 4NI9A 2B90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VUM D;  2B63 D;  4BBR D;  5IP7 D;  2JA7 D;  2C35 A;  2R92 D;  4A3B D;  4A3D D;  3H0G D;  3HOW D;  5C3E D;  5C4X D;  3HOZ D;  4A3F D;  4A3M D;  3HOX D;  5IYC D;  5IYD D;  4A3C D;  4A3G D;  5FLM D;  5C44 D;  3FKI D;  2R93 D;  4A3K D;  4BY7 D;  1Y1V D;  3PO3 D;  5IP9 D;  3I4N D;  3PO2 D;  3AYH A;  1WCM D;  3H3V E;  3HOU D;  4BBS D;  2R7Z D;  4A3I D;  2JA8 D;  4A93 D;  5IYB D;  3I4M D;  1Y14 A;  1Y1W D;  2JA5 D;  3HOY D;  4A3J D;  3HOV D;  4BY1 D;  4A3E D;  4A3L D;  4BXX D;  2JA6 D; 
#chains in the Genus database with same CATH topology
 5A2N A;  5IP7 D;  1IAR A;  5D59 A;  1M4C A;  5EQH A;  5L6Y C;  4ZF7 A;  4GC0 A;  4YPG C;  2Q14 A;  1A7M A;  3PO2 D;  3I4N D;  1ALU A;  4Z5R D;  1JLI A;  2O27 A;  3NCF A;  2JA8 D;  1HUL A;  2O6I A;  3I4M D;  3MZG A;  2HYM B;  4IKV A;  4LRL A;  1PV7 A;  1Y6M L;  4TPJ A;  4ZWB A;  1INR A;  3D48 P;  2H24 A;  1M48 A;  2JA7 D;  4NN6 A;  1PW6 A;  3BPN A;  3DLQ I;  2PSM A;  1BBN A;  2D9Q A;  5C3E D;  2XUT A;  1CN4 C;  1IRL A;  1D9G A;  4FA8 E;  1Y6N L;  3S9D A;  4A3I D;  1HUW A;  1EMR A;  1BGD A;  1IL6 A;  4BXX D;  3G6D A;  2JA6 D;  3UEZ E;  3TGX B;  2B63 D;  4JA3 A;  3WCY I;  5D28 B;  3VA2 A;  5C4X D;  1EKU A;  5IYC D;  5C65 A;  3DGC L;  1HIJ A;  2Z3R A;  4OH3 A;  1Y1W D;  4YQX A;  4DKF A;  1YKB A;  5FHX A;  3DI2 A;  2B8X A;  4A3C D;  3B5K A;  4NKQ C;  5IYB D;  1CD9 A;  3LB6 B;  4NN5 A;  1FYH A;  4NEJ A;  1HZI A;  2O26 A;  3O7Q A;  3HOZ D;  2INT A;  3HHR A;  4BY7 D;  1P9M B;  3HOU D;  3PIW A;  3HMX B;  1RW5 A;  5E4E A;  4A3E D;  1F6F A;  3QWR B;  4DKE A;  1IK0 A;  3NCC A;  2B91 A;  4A3B D;  1AX8 A;  2IL6 A;  1D9C A;  1Y1V D;  4CNI C;  1V7M V;  4TPH A;  3DUH C;  4YBQ A;  4NI7 A;  3OQ3 A;  5KNH I;  4GS7 A;  3BPO A;  1N1F A;  4DKC A;  1GNC A;  2B8Z A;  4JRE A;  1Y6K L;  3WDO A;  3LB6 A;  3PIV A;  5FLM D;  3Q1S I;  4DKD A;  3L5X A;  1HWH A;  2L3Y A;  5D70 A;  1LK3 A;  3DI3 A;  3BPL A;  1ILK A;  2VUM D;  2Y5Y A;  1RHG A;  4A3D D;  1ITI A;  1BGE A;  1EVS A;  3D87 A;  4U4V A;  4JR9 A;  4I77 Z;  3UF2 A;  3H3V E;  4O9H A;  5TS9 A;  4TPG A;  2JA5 D;  3HOY D;  1V7N V;  4IU8 A;  5D58 A;  1M49 A;  1ITL A;  4PYP A;  2Q7N B;  1I1R B;  4UVM A;  4DOH A;  1VLK A;  1F45 B;  4YUE C;  4A3J D;  4BY1 D;  1B5L A;  5D22 A;  1NBP A;  4U4T A;  4IU9 A;  1FG9 A;  2C35 A;  3IRH A;  2Q98 A;  3HOW D;  5D72 A;  4A3G D;  4IKX A;  5IYD D;  2R93 D;  1PW4 A;  4A3K D;  4U4W A;  4APS A;  4MHL A;  4YB9 D;  1PV6 A;  1SCF A;  5LQB A;  3QAZ A;  3QB7 A;  1KF9 A;  1Y14 A;  1BGC A;  1CNT 1;  4Q65 A;  5EQG A;  4A3L D;  2CYK A;  2OQP A;  3G9V B;  1Z92 A;  3H0G D;  1WU3 I;  2ILK A;  1HGU A;  1M4A A;  2LAG A;  3NCB A;  4ZS7 A;  1IJZ A;  4BBS D;  2R7Z D;  1CYL A;  4GBZ A;  4EXN A;  1ITF A;  2CFQ A;  4W6V A;  2V8N A;  2B5I A;  3HOV D;  3EJJ A;  3QB1 A;  4XNJ A;  1HWG A;  4LEP A;  1QVN A;  2B8U A;  2B8Y A;  1CSG A;  1LKI A;  4NEM A;  3HHC A;  3NPZ A;  4EXP A;  3AYH A;  3OG4 A;  3SE3 B;  1M4R A;  2E9W C;  5D71 A;  1GA3 A;  4GBY A;  2KZ1 A;  1AU1 A;  5C7X A;  1LQS L;  1PGR A;  4NI9 A;  2B90 A;  4BBR D;  4O6K A;  2D48 A;  3L5W I;  4IKZ A;  5A2O A;  4D2D A;  5FUC A;  3PO3 D;  3BES L;  3EW3 A;  3OG6 A;  4A93 D;  4IKW A;  2GMF A;  4RS1 A;  3NCE A;  3SE4 B;  2L3O A;  4NN7 A;  1A22 A;  1BCN A;  4QIQ A;  4ZYR A;  2ERJ D;  5D6K A;  4A3F D;  1M47 A;  5C44 D;  1M4B A;  5IP9 D;  2Z3Q A;  4GRW A;  4J05 A;  4D2B A;  1PVH B;  1RFB A;  1HIK A;  4X51 A;  2XQB A;  1PY2 A;  1ITM A;  1BUY A;  2R92 D;  3N0P A;  1BP3 A;  3UX9 A;  3FKI D;  4IKY A;  3INK C;  1WCM D;  2LMS A;  1J7V L;  3UF5 A;  4YDY I;  1AXI A;  4WRL B;  1EER A;  4XNI A;  2CFP A;  4LDS A;  4A3M D;  3HOX D;  4D2C A;  4ZWC A;  3D85 C;  3QT2 C;  4PS4 A;  1EXZ A;  5GXB A;  4J4L C;  1ETE A;  4ZW9 A;  3N06 A;  4OAA A;  1RCB A;  5EQI A;  1Z7C A;  3O7P A; 
#chains in the Genus database with same CATH homology
 4BBR D;  5IP7 D;  1IAR A;  1HZI A;  4O6K A;  1A7M A;  2D48 A;  3L5W I;  1M49 A;  1M4C A;  2O26 A;  1ITL A;  3HOZ D;  2INT A;  5L6Y C;  5FUC A;  4ZF7 A;  4YPG C;  2Q14 A;  3HHR A;  2Q7N B;  1P9M B;  4BY7 D;  1I1R B;  3BES L;  1ALU A;  3I4N D;  3PO2 D;  3PO3 D;  3EW3 A;  4Z5R D;  1JLI A;  3OG6 A;  3HOU D;  2O27 A;  4DOH A;  3NCF A;  2JA8 D;  1HUL A;  3PIW A;  4A93 D;  1VLK A;  2O6I A;  3HMX B;  3I4M D;  2GMF A;  1F45 B;  2HYM B;  1RW5 A;  3MZG A;  5E4E A;  4LRL A;  4YUE C;  4A3J D;  4RS1 A;  4BY1 D;  3NCE A;  1B5L A;  1Y6M L;  3SE4 B;  5D22 A;  4A3E D;  2L3O A;  4NN7 A;  1F6F A;  1NBP A;  1INR A;  3D48 P;  3QWR B;  4DKE A;  1A22 A;  2H24 A;  1IK0 A;  1BCN A;  1M48 A;  3NCC A;  1FG9 A;  2JA7 D;  2C35 A;  4NN6 A;  3IRH A;  1PW6 A;  2B91 A;  4A3B D;  1AX8 A;  3BPN A;  3DLQ I;  2ERJ D;  2Q98 A;  2PSM A;  1BBN A;  2D9Q A;  5C3E D;  3HOW D;  5D72 A;  1CN4 C;  1IRL A;  4A3F D;  4A3G D;  5IYD D;  2IL6 A;  1M47 A;  5C44 D;  2R93 D;  1M4B A;  4A3K D;  1D9C A;  1Y1V D;  5IP9 D;  2Z3Q A;  1V7M V;  4CNI C;  1D9G A;  4MHL A;  4GRW A;  4FA8 E;  1SCF A;  1Y6N L;  3S9D A;  3DUH C;  5LQB A;  1HUW A;  4A3I D;  1EMR A;  3QAZ A;  3OQ3 A;  3QB7 A;  1KF9 A;  4NI7 A;  1PVH B;  1Y14 A;  1BGC A;  5KNH I;  4GS7 A;  1BGD A;  1CNT 1;  1RFB A;  1HIK A;  4X51 A;  2XQB A;  1PY2 A;  4A3L D;  3BPO A;  1IL6 A;  1ITM A;  4BXX D;  3G6D A;  2JA6 D;  3UEZ E;  2CYK A;  2OQP A;  1N1F A;  3TGX B;  2B63 D;  1BUY A;  4DKC A;  3G9V B;  1Z92 A;  2R92 D;  1GNC A;  3H0G D;  1WU3 I;  2B8Z A;  5D28 B;  3WCY I;  2ILK A;  3VA2 A;  5C4X D;  1EKU A;  1Y6K L;  3N0P A;  1HGU A;  1M4A A;  1BP3 A;  2LAG A;  3LB6 A;  3NCB A;  3PIV A;  3UX9 A;  4ZS7 A;  1IJZ A;  5IYC D;  3FKI D;  5FLM D;  3INK C;  3Q1S I;  1WCM D;  3DGC L;  4DKD A;  2LMS A;  1J7V L;  3L5X A;  1HWH A;  4BBS D;  2L3Y A;  2R7Z D;  1CYL A;  4EXN A;  1HIJ A;  2Z3R A;  5D70 A;  3UF5 A;  1ITF A;  1LK3 A;  2B5I A;  1Y1W D;  3HOV D;  3DI3 A;  3EJJ A;  4YDY I;  4YQX A;  3QB1 A;  4DKF A;  3BPL A;  1HWG A;  1AXI A;  1ILK A;  1YKB A;  2VUM D;  5FHX A;  1QVN A;  4WRL B;  3DI2 A;  1RHG A;  4A3D D;  1EER A;  2B8U A;  1ITI A;  2B8Y A;  2B8X A;  1CSG A;  1BGE A;  1LKI A;  4NEM A;  3HOX D;  4A3M D;  4A3C D;  1EVS A;  3D87 A;  3HHC A;  3NPZ A;  4EXP A;  3D85 C;  3QT2 C;  4I77 Z;  3B5K A;  3AYH A;  3OG4 A;  4PS4 A;  3UF2 A;  3SE3 B;  3H3V E;  1EXZ A;  4O9H A;  5TS9 A;  1M4R A;  2E9W C;  4NKQ C;  4J4L C;  5IYB D;  5D71 A;  1ETE A;  1GA3 A;  2JA5 D;  3HOY D;  1CD9 A;  3N06 A;  3LB6 B;  2KZ1 A;  1AU1 A;  4NN5 A;  1V7N V;  5C7X A;  1FYH A;  1RCB A;  4NEJ A;  1LQS L;  1Z7C A;  1PGR A;  4NI9 A;  2B90 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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