2B63D

Complete rna polymerase ii-rna inhibitor complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
218
structure length
177
Chain Sequence
STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords 31-MER
publication title Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 39
structure length 177
sequence length 218
ec nomenclature
pdb deposition date 2005-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 2b63D02
5IYBD 5FLMD 3HOUD 4A3LD 3HOXD 1Y1VD 4BXXD 3H0GD 2VUMD 4A3DD 4BBSD 4A3CD 3I4MD 4A3BD 5C4XD 1Y1WD 3I4ND 2C35A 2R7ZD 5C44D 4A3KD 5C3ED 4A3MD 3PO2D 5IP7D 2JA5D 3HOVD 3AYHA 2R92D 3H3VE 3HOZD 5IYDD 5IP9D 4A3JD 2B63D 4A3ED 4A3ID 4BBRD 4A3GD 3HOYD 2R93D 4A3FD 2JA6D 3HOWD 4A93D 3PO3D 1WCMD 1Y14A 3FKID 4BY1D 2JA8D 4BY7D 5IYCD 2JA7D
chains in the Genus database with same CATH superfamily
2Q98A 2LAGA 4YUEC 1HWGA 1F6FA 2L3OA 5C7XA 3NCBA 3D48P 5C3ED 1M4RA 1PY2A 3SE4B 2JA5D 4U4WA 5IP9D 1PVHB 3N06A 1WCMD 1Y14A 4BY1D 3HOWD 2OQPA 3NCEA 3D85C 4BXXD 1BUYA 4IKWA 4APSA 4IU8A 4NI7A 1YKBA 1AX8A 3L5XA 3HHCA 3WDOA 1M4CA 3HOYD 3BESL 5D72A 4BY7D 2JA8D 2B5IA 4JR9A 3I4MD 3LB6B 2B8ZA 4J05A 3HHRA 3VA2A 4ZW9A 1B5LA 2XQBA 4J4LC 2H24A 4IU9A 1NBPA 4I77Z 1EERA 3QWRB 5L6YC 4A93D 5C65A 5D70A 3OG6A 4IKXA 4GC0A 5IYBD 1M47A 1Y1VD 4NKQC 3G9VB 1HIJA 3MZGA 4ZWCA 1JLIA 4UVMA 4DOHA 4NI9A 4MHLA 4A3KD 3AYHA 2HYMB 1IARA 4A3ID 3Q1SI 2Q14A 4DKFA 3DI2A 3QB1A 2ILKA 2JA7D 1SCFA 1HUWA 1CD9A 1LK3A 4YB9D 2Q7NB 1FYHA 5IP7D 4ZS7A 1INRA 4DKEA 2V8NA 4Z5RD 4A3ED 3PIVA 1M49A 1AXIA 1PW4A 5FUCA 1VLKA 1Y6ML 4XNJA 1LQSL 2Y5YA 5TS9A 3UEZE 4LEPA 1A22A 1M4AA 4TPGA 1Y6NL 3QAZA 4PYPA 4NN7A 1ILKA 1ALUA 4BBRD 4JREA 4ZYRA 4YDYI 1HULA 2E9WC 1CSGA 1AU1A 1EXZA 2Z3QA 4A3CD 5D28B 4U4TA 5FHXA 1CYLA 1HIKA 4GBYA 1PW6A 2CFQA 3BPOA 3OG4A 1EMRA 1BGEA 4U4VA 2B8UA 1CN4C 4FA8E 3TGXB 1QVNA 1A7MA 3BPNA 4NN5A 3HMXB 4D2DA 5D71A 2R92D 2B8XA 1GA3A 2CYKA 4NEMA 4LDSA 2KZ1A 4A3JD 4IKYA 3NCFA 3B5KA 3FKID 1BP3A 4D2CA 4PS4A 3DI3A 5GXBA 1Z92A 1HGUA 3D87A 4W6VA 1ITIA 2B63D 4YPGC 4JA3A 4A3GD 1Z7CA 1BBNA 1HZIA 2IL6A 1I1RB 3UX9A 3UF2A 2L3YA 5EQHA 3NCCA 2O6IA 1RHGA 1Y1WD 1ITMA 4ZWBA 3N0PA 1V7NV 4O6KA 4DKDA 4TPHA 3H3VE 1Y6KL 2R93D 1BCNA 1IJZA 3G6DA 1LKIA 2LMSA 5EQIA 5IYCD 4OAAA 3IRHA 4YBQA 1RCBA 5D58A 4BBSD 4A3BD 2D48A 5C4XD 1D9CA 2C35A 4GBZA 3O7PA 4QIQA 5C44D 4A3MD 3DLQI 3HOVD 4ZF7A 1IL6A 3EW3A 3QB7A 1PV6A 3SE3B 2GMFA 3NPZA 3LB6A 1GNCA 4WRLB 3PIWA 1J7VL 2B91A 4NEJA 4EXNA 1EKUA 3QT2C 2B90A 4A3FD 4YQXA 4GRWA 2PSMA 2ERJD 5EQGA 1EVSA 4XNIA 1ETEA 4Q65A 5D22A 3O7QA 1P9MB 1RW5A 5A2OA 1BGCA 3DUHC 3INKC 1D9GA 2O26A 5D59A 1PGRA 4DKCA 4A3LD 3HOXD 4A3DD 4LRLA 1F45B 4O9HA 1KF9A 3PO2D 5LQBA 1ITFA 4IKZA 4RS1A 1WU3I 3DGCL 3EJJA 2JA6D 1PV7A 2D9QA 3BPLA 5D6KA 3HOZD 2B8YA 5A2NA 1M48A 4IKVA 5FLMD 3HOUD 2VUMD 1M4BA 1RFBA 2CFPA 3I4ND 2XUTA 5E4EA 2R7ZD 1V7MV 2INTA 4CNIC 1HWHA 5KNHI 1ITLA 1BGDA 3L5WI 1IK0A 4EXPA 3H0GD 1IRLA 4X51A 2Z3RA 4OH3A 1N1FA 4GS7A 4NN6A 3OQ3A 2O27A 3S9DA 3WCYI 4D2BA 1CNT1 5IYDD 4TPJA 3UF5A 1FG9A 3PO3D
chains in the Genus database with same CATH topology
1HUWA 1CD9A 4GRWA 2PSMA 2Q98A 4PS4A 2ERJD 3DI3A 2LAGA 4ZF7A 4YUEC 1EVSA 1HWGA 1LK3A 1F6FA 2L3OA 5C7XA 3NCBA 3D48P 1ETEA 5D22A 1Z92A 1HGUA 5C3ED 2Q7NB 1FYHA 1M4RA 1PY2A 3D87A 1P9MB 5IP7D 1RW5A 3SE4B 4ZS7A 1INRA 2JA5D 4DKEA 1ITIA 4Z5RD 5IP9D 1BGCA 2B63D 4A3ED 4YPGC 4A3GD 3DUHC 1PVHB 3INKC 3N06A 3PIVA 1D9GA 1M49A 1WCMD 1AXIA 1Y14A 1BBNA 1Z7CA 1HZIA 2IL6A 1I1RB 2O26A 4BY1D 5FUCA 1VLKA 1Y6ML 2OQPA 3UX9A 3NCEA 1PGRA 3UF2A 4DKCA 3HOWD 1LQSL 2L3YA 3D85C 5TS9A 3UEZE 3HOXD 4A3LD 1A22A 4BXXD 1BUYA 1M4AA 4A3DD 4LRLA 1F45B 3NCCA 2O6IA 1RHGA 1Y6NL 1Y1WD 1ITMA 4O9HA 3QAZA 3N0PA 1KF9A 3PO2D 5LQBA 4NI7A 1V7NV 1YKBA 4O6KA 4NN7A 1AX8A 1ILKA 4DKDA 1ALUA 3H3VE 1Y6KL 3L5XA 3HHCA 1ITFA 4RS1A 1WU3I 1M4CA 4BBRD 3HOYD 2R93D 1BCNA 1IJZA 3BESL 3DGCL 3EJJA 2JA6D 3G6DA 2D9QA 5D72A 1LKIA 4YDYI 2JA8D 2LMSA 3BPLA 4BY7D 2B5IA 5IYCD 3I4MD 3HOZD 3IRHA 3LB6B 2B8YA 2B8ZA 1HULA 3HHRA 3VA2A 1M48A 1RCBA 5FLMD 3HOUD 2E9WC 1CSGA 1AU1A 1B5LA 1EXZA 2Z3QA 2VUMD 4BBSD 4A3CD 1M4BA 4A3BD 1RFBA 2D48A 5C4XD 1D9CA 5D28B 2XQBA 3I4ND 2C35A 4J4LC 5E4EA 2H24A 5FHXA 1CYLA 2R7ZD 1V7MV 5C44D 4A3MD 3DLQI 3HOVD 1NBPA 1HIKA 2INTA 4I77Z 1EERA 1PW6A 3QWRB 1IL6A 3BPOA 3EW3A 3OG4A 1EMRA 3QB7A 1BGEA 4CNIC 1HWHA 5KNHI 5L6YC 1ITLA 4A93D 5D70A 3SE3B 2B8UA 1CN4C 3OG6A 1BGDA 4FA8E 2GMFA 5IYBD 3L5WI 3NPZA 1M47A 1IK0A 4EXPA 1Y1VD 3H0GD 1IRLA 4NKQC 3G9VB 3LB6A 4X51A 3TGXB 1HIJA 2Z3RA 1QVNA 3MZGA 4WRLB 1GNCA 1A7MA 3QB1A 1N1FA 1JLIA 3PIWA 3BPNA 4DOHA 1J7VL 4NI9A 4NN5A 2B91A 4GS7A 4MHLA 4NEJA 4NN6A 4EXNA 3OQ3A 4A3KD 2O27A 3HMXB 5D71A 3S9DA 3AYHA 2R92D 2B8XA 3WCYI 1CNT1 2HYMB 1EKUA 1GA3A 2CYKA 4NEMA 1IARA 3QT2C 5IYDD 2KZ1A 4A3JD 4A3ID 3UF5A 1FG9A 2B90A 3Q1SI 2Q14A 3NCFA 4A3FD 4DKFA 3PO3D 3B5KA 3FKID 3DI2A 1BP3A 2JA7D 2ILKA 4YQXA 1SCFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYB D;  5FLM D;  3HOU D;  4A3L D;  3HOX D;  1Y1V D;  4BXX D;  3H0G D;  2VUM D;  4A3D D;  4BBS D;  4A3C D;  3I4M D;  4A3B D;  5C4X D;  1Y1W D;  3I4N D;  2C35 A;  2R7Z D;  5C44 D;  4A3K D;  5C3E D;  4A3M D;  3PO2 D;  5IP7 D;  2JA5 D;  3HOV D;  3AYH A;  2R92 D;  3H3V E;  3HOZ D;  5IYD D;  5IP9 D;  4A3J D;  2B63 D;  4A3E D;  4A3I D;  4BBR D;  4A3G D;  3HOY D;  2R93 D;  4A3F D;  2JA6 D;  3HOW D;  4A93 D;  3PO3 D;  1WCM D;  1Y14 A;  3FKI D;  4BY1 D;  2JA8 D;  4BY7 D;  5IYC D;  2JA7 D; 
#chains in the Genus database with same CATH topology
 2Q98 A;  2LAG A;  4YUE C;  1HWG A;  1F6F A;  2L3O A;  5C7X A;  3NCB A;  3D48 P;  5C3E D;  1M4R A;  1PY2 A;  3SE4 B;  2JA5 D;  4U4W A;  5IP9 D;  1PVH B;  3N06 A;  1WCM D;  1Y14 A;  4BY1 D;  3HOW D;  2OQP A;  3NCE A;  3D85 C;  4BXX D;  1BUY A;  4IKW A;  4APS A;  4IU8 A;  4NI7 A;  1YKB A;  1AX8 A;  3L5X A;  3HHC A;  3WDO A;  1M4C A;  3HOY D;  3BES L;  5D72 A;  4BY7 D;  2JA8 D;  2B5I A;  4JR9 A;  3I4M D;  3LB6 B;  2B8Z A;  4J05 A;  3HHR A;  3VA2 A;  4ZW9 A;  1B5L A;  2XQB A;  4J4L C;  2H24 A;  4IU9 A;  1NBP A;  4I77 Z;  1EER A;  3QWR B;  5L6Y C;  4A93 D;  5C65 A;  5D70 A;  3OG6 A;  4IKX A;  4GC0 A;  5IYB D;  1M47 A;  1Y1V D;  4NKQ C;  3G9V B;  1HIJ A;  3MZG A;  4ZWC A;  1JLI A;  4UVM A;  4DOH A;  4NI9 A;  4MHL A;  4A3K D;  3AYH A;  2HYM B;  1IAR A;  4A3I D;  3Q1S I;  2Q14 A;  4DKF A;  3DI2 A;  3QB1 A;  2ILK A;  2JA7 D;  1SCF A;  1HUW A;  1CD9 A;  1LK3 A;  4YB9 D;  2Q7N B;  1FYH A;  5IP7 D;  4ZS7 A;  1INR A;  4DKE A;  2V8N A;  4Z5R D;  4A3E D;  3PIV A;  1M49 A;  1AXI A;  1PW4 A;  5FUC A;  1VLK A;  1Y6M L;  4XNJ A;  1LQS L;  2Y5Y A;  5TS9 A;  3UEZ E;  4LEP A;  1A22 A;  1M4A A;  4TPG A;  1Y6N L;  3QAZ A;  4PYP A;  4NN7 A;  1ILK A;  1ALU A;  4BBR D;  4JRE A;  4ZYR A;  4YDY I;  1HUL A;  2E9W C;  1CSG A;  1AU1 A;  1EXZ A;  2Z3Q A;  4A3C D;  5D28 B;  4U4T A;  5FHX A;  1CYL A;  1HIK A;  4GBY A;  1PW6 A;  2CFQ A;  3BPO A;  3OG4 A;  1EMR A;  1BGE A;  4U4V A;  2B8U A;  1CN4 C;  4FA8 E;  3TGX B;  1QVN A;  1A7M A;  3BPN A;  4NN5 A;  3HMX B;  4D2D A;  5D71 A;  2R92 D;  2B8X A;  1GA3 A;  2CYK A;  4NEM A;  4LDS A;  2KZ1 A;  4A3J D;  4IKY A;  3NCF A;  3B5K A;  3FKI D;  1BP3 A;  4D2C A;  4PS4 A;  3DI3 A;  5GXB A;  1Z92 A;  1HGU A;  3D87 A;  4W6V A;  1ITI A;  2B63 D;  4YPG C;  4JA3 A;  4A3G D;  1Z7C A;  1BBN A;  1HZI A;  2IL6 A;  1I1R B;  3UX9 A;  3UF2 A;  2L3Y A;  5EQH A;  3NCC A;  2O6I A;  1RHG A;  1Y1W D;  1ITM A;  4ZWB A;  3N0P A;  1V7N V;  4O6K A;  4DKD A;  4TPH A;  3H3V E;  1Y6K L;  2R93 D;  1BCN A;  1IJZ A;  3G6D A;  1LKI A;  2LMS A;  5EQI A;  5IYC D;  4OAA A;  3IRH A;  4YBQ A;  1RCB A;  5D58 A;  4BBS D;  4A3B D;  2D48 A;  5C4X D;  1D9C A;  2C35 A;  4GBZ A;  3O7P A;  4QIQ A;  5C44 D;  4A3M D;  3DLQ I;  3HOV D;  4ZF7 A;  1IL6 A;  3EW3 A;  3QB7 A;  1PV6 A;  3SE3 B;  2GMF A;  3NPZ A;  3LB6 A;  1GNC A;  4WRL B;  3PIW A;  1J7V L;  2B91 A;  4NEJ A;  4EXN A;  1EKU A;  3QT2 C;  2B90 A;  4A3F D;  4YQX A;  4GRW A;  2PSM A;  2ERJ D;  5EQG A;  1EVS A;  4XNI A;  1ETE A;  4Q65 A;  5D22 A;  3O7Q A;  1P9M B;  1RW5 A;  5A2O A;  1BGC A;  3DUH C;  3INK C;  1D9G A;  2O26 A;  5D59 A;  1PGR A;  4DKC A;  4A3L D;  3HOX D;  4A3D D;  4LRL A;  1F45 B;  4O9H A;  1KF9 A;  3PO2 D;  5LQB A;  1ITF A;  4IKZ A;  4RS1 A;  1WU3 I;  3DGC L;  3EJJ A;  2JA6 D;  1PV7 A;  2D9Q A;  3BPL A;  5D6K A;  3HOZ D;  2B8Y A;  5A2N A;  1M48 A;  4IKV A;  5FLM D;  3HOU D;  2VUM D;  1M4B A;  1RFB A;  2CFP A;  3I4N D;  2XUT A;  5E4E A;  2R7Z D;  1V7M V;  2INT A;  4CNI C;  1HWH A;  5KNH I;  1ITL A;  1BGD A;  3L5W I;  1IK0 A;  4EXP A;  3H0G D;  1IRL A;  4X51 A;  2Z3R A;  4OH3 A;  1N1F A;  4GS7 A;  4NN6 A;  3OQ3 A;  2O27 A;  3S9D A;  3WCY I;  4D2B A;  1CNT 1;  5IYD D;  4TPJ A;  3UF5 A;  1FG9 A;  3PO3 D; 
#chains in the Genus database with same CATH homology
 1HUW A;  1CD9 A;  4GRW A;  2PSM A;  2Q98 A;  4PS4 A;  2ERJ D;  3DI3 A;  2LAG A;  4ZF7 A;  4YUE C;  1EVS A;  1HWG A;  1LK3 A;  1F6F A;  2L3O A;  5C7X A;  3NCB A;  3D48 P;  1ETE A;  5D22 A;  1Z92 A;  1HGU A;  5C3E D;  2Q7N B;  1FYH A;  1M4R A;  1PY2 A;  3D87 A;  1P9M B;  5IP7 D;  1RW5 A;  3SE4 B;  4ZS7 A;  1INR A;  2JA5 D;  4DKE A;  1ITI A;  4Z5R D;  5IP9 D;  1BGC A;  2B63 D;  4A3E D;  4YPG C;  4A3G D;  3DUH C;  1PVH B;  3INK C;  3N06 A;  3PIV A;  1D9G A;  1M49 A;  1WCM D;  1AXI A;  1Y14 A;  1BBN A;  1Z7C A;  1HZI A;  2IL6 A;  1I1R B;  2O26 A;  4BY1 D;  5FUC A;  1VLK A;  1Y6M L;  2OQP A;  3UX9 A;  3NCE A;  1PGR A;  3UF2 A;  4DKC A;  3HOW D;  1LQS L;  2L3Y A;  3D85 C;  5TS9 A;  3UEZ E;  3HOX D;  4A3L D;  1A22 A;  4BXX D;  1BUY A;  1M4A A;  4A3D D;  4LRL A;  1F45 B;  3NCC A;  2O6I A;  1RHG A;  1Y6N L;  1Y1W D;  1ITM A;  4O9H A;  3QAZ A;  3N0P A;  1KF9 A;  3PO2 D;  5LQB A;  4NI7 A;  1V7N V;  1YKB A;  4O6K A;  4NN7 A;  1AX8 A;  1ILK A;  4DKD A;  1ALU A;  3H3V E;  1Y6K L;  3L5X A;  3HHC A;  1ITF A;  4RS1 A;  1WU3 I;  1M4C A;  4BBR D;  3HOY D;  2R93 D;  1BCN A;  1IJZ A;  3BES L;  3DGC L;  3EJJ A;  2JA6 D;  3G6D A;  2D9Q A;  5D72 A;  1LKI A;  4YDY I;  2JA8 D;  2LMS A;  3BPL A;  4BY7 D;  2B5I A;  5IYC D;  3I4M D;  3HOZ D;  3IRH A;  3LB6 B;  2B8Y A;  2B8Z A;  1HUL A;  3HHR A;  3VA2 A;  1M48 A;  1RCB A;  5FLM D;  3HOU D;  2E9W C;  1CSG A;  1AU1 A;  1B5L A;  1EXZ A;  2Z3Q A;  2VUM D;  4BBS D;  4A3C D;  1M4B A;  4A3B D;  1RFB A;  2D48 A;  5C4X D;  1D9C A;  5D28 B;  2XQB A;  3I4N D;  2C35 A;  4J4L C;  5E4E A;  2H24 A;  5FHX A;  1CYL A;  2R7Z D;  1V7M V;  5C44 D;  4A3M D;  3DLQ I;  3HOV D;  1NBP A;  1HIK A;  2INT A;  4I77 Z;  1EER A;  1PW6 A;  3QWR B;  1IL6 A;  3BPO A;  3EW3 A;  3OG4 A;  1EMR A;  3QB7 A;  1BGE A;  4CNI C;  1HWH A;  5KNH I;  5L6Y C;  1ITL A;  4A93 D;  5D70 A;  3SE3 B;  2B8U A;  1CN4 C;  3OG6 A;  1BGD A;  4FA8 E;  2GMF A;  5IYB D;  3L5W I;  3NPZ A;  1M47 A;  1IK0 A;  4EXP A;  1Y1V D;  3H0G D;  1IRL A;  4NKQ C;  3G9V B;  3LB6 A;  4X51 A;  3TGX B;  1HIJ A;  2Z3R A;  1QVN A;  3MZG A;  4WRL B;  1GNC A;  1A7M A;  3QB1 A;  1N1F A;  1JLI A;  3PIW A;  3BPN A;  4DOH A;  1J7V L;  4NI9 A;  4NN5 A;  2B91 A;  4GS7 A;  4MHL A;  4NEJ A;  4NN6 A;  4EXN A;  3OQ3 A;  4A3K D;  2O27 A;  3HMX B;  5D71 A;  3S9D A;  3AYH A;  2R92 D;  2B8X A;  3WCY I;  1CNT 1;  2HYM B;  1EKU A;  1GA3 A;  2CYK A;  4NEM A;  1IAR A;  3QT2 C;  5IYD D;  2KZ1 A;  4A3J D;  4A3I D;  3UF5 A;  1FG9 A;  2B90 A;  3Q1S I;  2Q14 A;  3NCF A;  4A3F D;  4DKF A;  3PO3 D;  3B5K A;  3FKI D;  3DI2 A;  1BP3 A;  2JA7 D;  2ILK A;  4YQX A;  1SCF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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