The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
148
|
structure length |
148
|
Chain Sequence |
ADPSEHCSHMIGNGHLKVLQQLIDSQMETSCQIAFEFVDQEQLDDPVCYLKKAFFLVQDIIDETMRFKDNTPNANATERLQELSNNLNSCFTKDYEEQNKACVRTFHETPLQLLEKIKNFFNETKNLLEKDWNIFTKNCNNSFAKCSS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of macrophage colony stimulating factor bound to FMS: diverse signaling assemblies of class III receptor tyrosine kinases.
pubmed doi rcsb |
| molecule tags |
Cytokine/signaling protein
|
| source organism |
Mus musculus
|
| molecule keywords |
Colony stimulating factor-1
|
| total genus |
52
|
| structure length |
148
|
| sequence length |
148
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2008-09-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05337 | CSF-1 | Macrophage colony stimulating factor-1 (CSF-1) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Growth Hormone; Chain: A; | Growth Hormone; Chain: A; |
#chains in the Genus database with same CATH superfamily 1LKI A; 3N0P A; 2GMF A; 1A22 A; 1JLI A; 5KNH I; 1PY2 A; 5D72 A; 3QB7 A; 4NI7 A; 3DUH C; 1F45 B; 1P9M B; 3EJJ A; 3UF2 A; 2E9W C; 1N1F A; 3INK C; 3G6D A; 4DOH A; 5FUC A; 1HWH A; 4YPG C; 1IK0 A; 1M4C A; 1CYL A; 2B5I A; 3SE4 B; 1Z92 A; 1SCF A; 1IL6 A; 1HWG A; 2B90 A; 5L6Y C; 4MHL A; 1I1R B; 1RFB A; 1BGD A; 1LK3 A; 3QB1 A; 1V7M V; 3OQ3 A; 2O27 A; 1EXZ A; 1Z7C A; 4Z5R D; 3N06 A; 4O9H A; 1EER A; 1KF9 A; 1HZI A; 1RW5 A; 1ALU A; 1FG9 A; 1AX8 A; 2LAG A; 1ITF A; 4ZF7 A; 3UX9 A; 1QVN A; 2O26 A; 3PIW A; 2LMS A; 4CNI C; 3NPZ A; 4NKQ C; 4GRW A; 3LB6 A; 1EMR A; 2B8U A; 1BGE A; 2CYK A; 1GA3 A; 1CD9 A; 3HMX B; 3BES L; 1M47 A; 1BP3 A; 4ZS7 A; 4NEM A; 1PVH B; 5FHX A; 1M4B A; 1Y6M L; 2L3O A; 3D87 A; 4J4L C; 1GNC A; 3LB6 B; 3D85 C; 3QWR B; 3DLQ I; 1YKB A; 2Q98 A; 4PS4 A; 1ITM A; 1ETE A; 5D70 A; 3QAZ A; 2B8X A; 3QT2 C; 1IJZ A; 1B5L A; 3PIV A; 1RCB A; 1J7V L; 1Y6N L; 2B8Y A; 1HUL A; 3VA2 A; 4FA8 E; 1F6F A; 2L3Y A; 3S9D A; 1RHG A; 1A7M A; 2IL6 A; 3HHR A; 5C7X A; 1WU3 I; 3G9V B; 2B91 A; 5LQB A; 2Q7N B; 1AXI A; 1HIK A; 2ILK A; 3SE3 B; 2D48 A; 5D22 A; 1HGU A; 2H24 A; 1CN4 C; 1FYH A; 5D28 B; 1EVS A; 1IRL A; 3BPN A; 3NCB A; 1D9C A; 1BCN A; 1CNT 1; 3EW3 A; 4YQX A; 1ILK A; 3NCE A; 3DGC L; 1ITL A; 1NBP A; 1CSG A; 1M4R A; 3NCF A; 1PW6 A; 4O6K A; 3B5K A; 1PGR A; 3Q1S I; 4YUE C; 1INR A; 1LQS L; 1ITI A; 1HUW A; 3L5X A; 2D9Q A; 2HYM B; 4NEJ A; 3UEZ E; 5E4E A; 3L5W I; 1V7N V; 3MZG A; 3WCY I; 4I77 Z; 1Y6K L; 1BGC A; 4YDY I; 3BPO A; 3BPL A; 1M49 A; 2ERJ D; 1M48 A; 2KZ1 A; 1BUY A; 1VLK A; 4X51 A; 4RS1 A; 1IAR A; 2INT A; 1HIJ A; 4WRL B; 1EKU A; 3D48 P; 2B8Z A; 3NCC A; 1AU1 A; 1D9G A; 4NI9 A; 1M4A A; 1BBN A; 3UF5 A; 5D71 A; #chains in the Genus database with same CATH topology 1F45 B; 3EJJ A; 2E9W C; 5IP9 D; 3G6D A; 4TPG A; 1IK0 A; 2O6I A; 3OG6 A; 4PYP A; 3SE4 B; 5L6Y C; 4MHL A; 1BGD A; 4IKX A; 4Z5R D; 1EXZ A; 1Z7C A; 5EQI A; 1RW5 A; 1FG9 A; 4DKE A; 2LAG A; 3UX9 A; 5IYC D; 4A3I D; 5C4X D; 2LMS A; 4CNI C; 3NPZ A; 4DKF A; 5C65 A; 3LB6 A; 4BY1 D; 1EMR A; 1M47 A; 1BP3 A; 4NEM A; 5FHX A; 2L3O A; 3D87 A; 4OAA A; 3LB6 B; 3PO3 D; 3QWR B; 4BBR D; 2Q98 A; 1ITM A; 3QT2 C; 4JRE A; 2CFP A; 4A3G D; 5A2N A; 1HUL A; 4IKY A; 4FA8 E; 2VUM D; 3H3V E; 3AYH A; 2JA7 D; 1A7M A; 4A93 D; 1WU3 I; 3G9V B; 1AXI A; 4LRL A; 2R7Z D; 1HGU A; 1PV7 A; 1CN4 C; 3I4N D; 2OQP A; 4BXX D; 3DGC L; 4D2C A; 1PW6 A; 3IRH A; 1PGR A; 1PV6 A; 4YB9 D; 1ITI A; 1HUW A; 3L5X A; 3L5W I; 4YDY I; 3BPO A; 3HOY D; 2ERJ D; 1VLK A; 4X51 A; 3D48 P; 5IYD D; 2Q14 A; 1D9G A; 5D71 A; 2XUT A; 5KNH I; 3HOX D; 5D72 A; 3OG4 A; 3UF2 A; 3INK C; 4UVM A; 2B5I A; 2Y5Y A; 5EQH A; 1I1R B; 3QB1 A; 1V7M V; 2O27 A; 4O9H A; 1ITF A; 4A3D D; 2O26 A; 3PIW A; 4A3E D; 4NKQ C; 1BGE A; 3HMX B; 3HOV D; 3HOZ D; 4EXN A; 4J4L C; 4U4W A; 3D85 C; 3DLQ I; 4ZW9 A; 2JA6 D; 3QAZ A; 2B8X A; 1B5L A; 1RCB A; 3S9D A; 3HOU D; 3HHR A; 4ZYR A; 5D6K A; 4BBS D; 4IU9 A; 5IYB D; 5D22 A; 1FYH A; 4YBQ A; 4GBZ A; 3BPN A; 1IRL A; 1PW4 A; 4LEP A; 4GC0 A; 1BCN A; 1ILK A; 3NCE A; 1ITL A; 1NBP A; 1CSG A; 4O6K A; 4A3K D; 5D59 A; 1INR A; 2HYM B; 4TPJ A; 3UEZ E; 3MZG A; 4DKD A; 3O7P A; 4A3L D; 4NN7 A; 2KZ1 A; 4NN5 A; 2CFQ A; 4RS1 A; 4A3M D; 4W6V A; 1LKI A; 2XQB A; 3N0P A; 2GMF A; 1A22 A; 4IU8 A; 3QB7 A; 4NI7 A; 5D58 A; 1P9M B; 4EXP A; 4DOH A; 5FUC A; 4YPG C; 1M4C A; 1CYL A; 4TPH A; 4XNI A; 2B63 D; 2B90 A; 1RFB A; 3N06 A; 4U4V A; 4GBY A; 4Q65 A; 4DKC A; 4D2D A; 1AX8 A; 4ZF7 A; 2B8U A; 3BES L; 4A3J D; 4ZS7 A; 1WCM D; 1GNC A; 2JA5 D; 1YKB A; 5A2O A; 3PIV A; 4JR9 A; 1J7V L; 1Y6N L; 1F6F A; 2L3Y A; 4LDS A; 5C3E D; 2IL6 A; 4A3B D; 4A3C D; 5IP7 D; 3TGX B; 2Q7N B; 3O7Q A; 2D48 A; 4J05 A; 4XNJ A; 3HOW D; 5D28 B; 3NCB A; 1D9C A; 3FKI D; 1CNT 1; 1M4R A; 3Q1S I; 4A3F D; 1LQS L; 3WCY I; 1Y6K L; 1BGC A; 3BPL A; 3DI3 A; 1M49 A; 1M48 A; 5GXB A; 1IAR A; 2V8N A; 1EKU A; 2B8Z A; 3NCC A; 1M4A A; 1Z92 A; 5FLM D; 1JLI A; 1PY2 A; 3DUH C; 4ZWC A; 2JA8 D; 1N1F A; 1HWH A; 2Z3R A; 4JA3 A; 4NN6 A; 1SCF A; 1IL6 A; 1HWG A; 1LK3 A; 3OQ3 A; 4IKZ A; 1EER A; 1KF9 A; 1HZI A; 1ALU A; 1Y14 A; 5TS9 A; 2Z3Q A; 1QVN A; 4GRW A; 4U4T A; 2CYK A; 1GA3 A; 1CD9 A; 3PO2 D; 1PVH B; 1M4B A; 1Y6M L; 4IKW A; 4OH3 A; 3I4M D; 4PS4 A; 1Y1V D; 1ETE A; 5D70 A; 4IKV A; 1IJZ A; 2B8Y A; 4QIQ A; 3VA2 A; 2PSM A; 1RHG A; 3H0G D; 5C7X A; 2B91 A; 5LQB A; 1HIK A; 2ILK A; 3SE3 B; 1Y1W D; 5EQG A; 2H24 A; 3HHC A; 1EVS A; 2R92 D; 3WDO A; 3EW3 A; 4YQX A; 4ZWB A; 2R93 D; 3NCF A; 3B5K A; 4YUE C; 2D9Q A; 4NEJ A; 5E4E A; 1V7N V; 4I77 Z; 5C44 D; 4D2B A; 1BUY A; 2INT A; 1HIJ A; 3DI2 A; 4GS7 A; 4WRL B; 4BY7 D; 2C35 A; 1AU1 A; 4APS A; 4NI9 A; 1BBN A; 3UF5 A; #chains in the Genus database with same CATH homology 1LKI A; 2XQB A; 5FLM D; 3N0P A; 2GMF A; 1A22 A; 1JLI A; 5KNH I; 3HOX D; 1PY2 A; 5D72 A; 3QB7 A; 4NI7 A; 3DUH C; 1F45 B; 1P9M B; 3EJJ A; 3OG4 A; 3UF2 A; 2E9W C; 4EXP A; 2JA8 D; 1N1F A; 3INK C; 5IP9 D; 3G6D A; 4DOH A; 5FUC A; 1HWH A; 4YPG C; 2Z3R A; 1IK0 A; 1M4C A; 2O6I A; 1CYL A; 3OG6 A; 2B5I A; 4NN6 A; 3SE4 B; 2B63 D; 1Z92 A; 1SCF A; 1IL6 A; 1HWG A; 2B90 A; 5L6Y C; 4MHL A; 1I1R B; 1RFB A; 1BGD A; 1LK3 A; 3QB1 A; 1V7M V; 3OQ3 A; 2O27 A; 1EXZ A; 1Z7C A; 4Z5R D; 3N06 A; 4O9H A; 1EER A; 1KF9 A; 1HZI A; 1RW5 A; 1ALU A; 1FG9 A; 4DKE A; 4DKC A; 1Y14 A; 1AX8 A; 2LAG A; 5TS9 A; 1ITF A; 4ZF7 A; 3UX9 A; 2Z3Q A; 5IYC D; 4A3D D; 4A3I D; 1QVN A; 2O26 A; 3PIW A; 5C4X D; 2LMS A; 4CNI C; 4A3E D; 3NPZ A; 4NKQ C; 4DKF A; 4GRW A; 3LB6 A; 4BY1 D; 1EMR A; 2B8U A; 1BGE A; 2CYK A; 1GA3 A; 1CD9 A; 3HMX B; 3BES L; 3HOV D; 1M47 A; 3PO2 D; 4A3J D; 1BP3 A; 4ZS7 A; 4NEM A; 3HOZ D; 1PVH B; 5FHX A; 1M4B A; 4EXN A; 1Y6M L; 1WCM D; 2L3O A; 3D87 A; 4J4L C; 1GNC A; 3LB6 B; 3D85 C; 3PO3 D; 3QWR B; 3DLQ I; 4BBR D; 2JA5 D; 1YKB A; 2Q98 A; 4PS4 A; 3I4M D; 1ITM A; 1Y1V D; 1ETE A; 2JA6 D; 5D70 A; 3QAZ A; 2B8X A; 3QT2 C; 1IJZ A; 1B5L A; 3PIV A; 4A3G D; 1RCB A; 1J7V L; 1Y6N L; 2B8Y A; 1HUL A; 3VA2 A; 4FA8 E; 2VUM D; 1F6F A; 2L3Y A; 3S9D A; 3H3V E; 2PSM A; 3AYH A; 3HOU D; 1RHG A; 5C3E D; 2JA7 D; 4A93 D; 1A7M A; 2IL6 A; 3H0G D; 3HHR A; 5C7X A; 1WU3 I; 3G9V B; 4A3B D; 2B91 A; 5LQB A; 4A3C D; 5IP7 D; 3TGX B; 2Q7N B; 4BBS D; 1AXI A; 5IYB D; 4LRL A; 1HIK A; 2ILK A; 3SE3 B; 2R7Z D; 2D48 A; 1Y1W D; 5D22 A; 1HGU A; 2H24 A; 3HHC A; 3HOW D; 1CN4 C; 1FYH A; 5D28 B; 3I4N D; 1EVS A; 1IRL A; 3BPN A; 3NCB A; 2OQP A; 2R92 D; 4BXX D; 1D9C A; 3FKI D; 1BCN A; 1CNT 1; 3EW3 A; 4YQX A; 1ILK A; 3NCE A; 3DGC L; 2R93 D; 1ITL A; 1NBP A; 1CSG A; 1M4R A; 3NCF A; 1PW6 A; 4O6K A; 3B5K A; 3IRH A; 1PGR A; 3Q1S I; 4YUE C; 4A3F D; 4A3K D; 1INR A; 1LQS L; 1ITI A; 1HUW A; 3L5X A; 2D9Q A; 2HYM B; 4NEJ A; 3UEZ E; 5E4E A; 3L5W I; 1V7N V; 3MZG A; 3WCY I; 4I77 Z; 4DKD A; 1Y6K L; 1BGC A; 4YDY I; 3BPO A; 3BPL A; 3DI3 A; 1M49 A; 3HOY D; 5C44 D; 2ERJ D; 4A3L D; 1M48 A; 4NN7 A; 2KZ1 A; 1BUY A; 4NN5 A; 1VLK A; 4X51 A; 4RS1 A; 1IAR A; 4A3M D; 2INT A; 1HIJ A; 3DI2 A; 4GS7 A; 1EKU A; 3D48 P; 2B8Z A; 4WRL B; 2C35 A; 3NCC A; 1AU1 A; 2Q14 A; 5IYD D; 4BY7 D; 1D9G A; 4NI9 A; 1M4A A; 1BBN A; 3UF5 A; 5D71 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
