3I4ND

8-oxoguanine containing rna polymerase ii elongation complex e
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
221
structure length
182
Chain Sequence
b'MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Molecular basis of transcriptional mutagenesis at 8-oxoguanine
pubmed doi rcsb
molecule tags Transcription,transferase/dna-rna hybrid
total genus 44
structure length 182
sequence length 221
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 3i4nD02
1Y1WD 2C35A 5C44D 2R93D 3I4ND 4BXXD 3PO2D 4A93D 1WCMD 5IYDD 5IYCD 2JA6D 4A3CD 3H0GD 5IP9D 2JA5D 4BY7D 3HOUD 3HOXD 2JA8D 5FLMD 4BBSD 5IP7D 5C4XD 4BBRD 3HOVD 3PO3D 4A3LD 2R92D 4A3ED 5IYBD 3H3VE 1Y1VD 4A3MD 3HOYD 5C3ED 2JA7D 3I4MD 4A3KD 2R7ZD 4A3BD 4A3DD 4A3FD 1Y14A 4BY1D 4A3ID 3HOWD 3HOZD 2B63D 4A3JD 3AYHA 4A3GD 2VUMD 3FKID
chains in the Genus database with same CATH superfamily
1Z7CA 2C35A 4PYPA 2O6IA 3UF2A 5IP9D 5FLMD 4IU8A 3N0PA 4IKYA 5C3ED 1HIJA 1EMRA 1M49A 5A2OA 4D2DA 4DKEA 1N1FA 4JREA 4TPGA 5IYDD 3DLQI 4A3CD 4NI7A 4LDSA 4XNIA 4YBQA 3Q1SI 1NBPA 4PS4A 4DOHA 2R7ZD 3BPNA 1M4AA 1ITMA 4J05A 5E4EA 2D9QA 5EQHA 5D71A 1CN4C 2B8XA 5C44D 4U4VA 1IRLA 4U4TA 3PIWA 3BPOA 3H0GD 2JA5D 2B8UA 1J7VL 1LK3A 2H24A 5IP7D 3O7PA 3UX9A 1PW6A 4YB9D 1M4BA 1PGRA 4IU9A 1KF9A 2GMFA 1FG9A 3L5WI 4A93D 3NCBA 2LMSA 3BESL 1D9CA 2B5IA 3BPLA 1JLIA 2Q98A 3HOYD 4YPGC 4IKVA 1HWGA 2CFPA 1CNT1 3VA2A 5D22A 4GS7A 1A22A 4APSA 3QWRB 1RHGA 1QVNA 1Z92A 4BBSD 2Q14A 2R92D 1V7NV 1GA3A 1M4RA 3I4MD 1M4CA 2B8YA 4W6VA 5GXBA 4JR9A 1PV7A 3EJJA 2CYKA 5FUCA 4DKCA 4OAAA 3NPZA 2PSMA 2L3OA 1I1RB 3N06A 4I77Z 3QAZA 4LEPA 2INTA 4YDYI 4A3KD 5D70A 4EXNA 3UEZE 5C7XA 4NEMA 3D87A 4NI9A 1Y6ML 2Y5YA 4NN5A 1ITIA 1HULA 4NEJA 4CNIC 4BY7D 1ILKA 4TPJA 3HMXB 3HOVD 2O26A 3PO3D 5D58A 1HIKA 3NCEA 4Q65A 4ZWBA 4GBYA 5EQGA 1A7MA 1IJZA 1BGCA 3MZGA 1INRA 1YKBA 3QB1A 1Y6KL 4J4LC 4A3FD 3DUHC 4X51A 4A3JD 3OG4A 1ITFA 1EERA 1Y1WD 4MHLA 4BXXD 4ZWCA 5FHXA 1HUWA 1B5LA 3NCFA 4GBZA 5D72A 2Z3QA 1PVHB 2B8ZA 5IYBD 1Y1VD 4TPHA 4A3BD 3QB7A 1BGDA 4ZW9A 4O9HA 1BCNA 4LRLA 1IARA 1EKUA 1ITLA 3EW3A 4Z5RD 1WCMD 3NCCA 3PIVA 4NN6A 4QIQA 3TGXB 4DKFA 2OQPA 5C4XD 3HHCA 4NN7A 4A3LD 5TS9A 1EXZA 1AU1A 1EVSA 4UVMA 2XUTA 3WCYI 1IL6A 1FYHA 5A2NA 4A3ID 3DI3A 3HOWD 3WDOA 1RFBA 2HYMB 3O7QA 1SCFA 1D9GA 1AX8A 2B91A 3L5XA 2CFQA 4FA8E 2JA8D 2LAGA 1BUYA 1ALUA 4BBRD 2L3YA 2JA7D 4YQXA 1PV6A 3HOZD 2B63D 4ZYRA 3FKID 3I4ND 1P9MB 3SE4B 1HWHA 4YUEC 3DGCL 4NKQC 5LQBA 1HGUA 2KZ1A 2XQBA 1M47A 1VLKA 2ILKA 1Y14A 4BY1D 1CYLA 4A3GD 4JA3A 5IYCD 3QT2C 4U4WA 3HOUD 1F6FA 1HZIA 3G9VB 4ZS7A 1BP3A 5L6YC 1CD9A 4EXPA 2V8NA 2Z3RA 1Y6NL 2D48A 3IRHA 3H3VE 1AXIA 4WRLB 4ZF7A 1RW5A 4IKWA 1ETEA 2ERJD 1IK0A 5KNHI 4O6KA 3UF5A 1BBNA 2O27A 1BGEA 2JA6D 4RS1A 2IL6A 5D6KA 3INKC 4A3DD 3D48P 3OQ3A 1PW4A 1RCBA 3G6DA 2Q7NB 4D2BA 1PY2A 2B90A 4GC0A 1M48A 3D85C 1V7MV 3HHRA 4A3ED 4IKXA 4A3MD 1LKIA 3OG6A 3LB6A 4DKDA 3DI2A 4D2CA 1CSGA 3B5KA 2VUMD 3S9DA 4IKZA 2R93D 1GNCA 3LB6B 5D28B 5D59A 3PO2D 1LQSL 3HOXD 3SE3B 4GRWA 4OH3A 1WU3I 1F45B 4XNJA 2E9WC 5C65A 5EQIA 3AYHA
chains in the Genus database with same CATH topology
1Z7CA 1Y1WD 2C35A 3QWRB 4MHLA 4BXXD 1RHGA 1QVNA 5IYCD 2O6IA 3UF2A 3QT2C 5FHXA 5IP9D 1HUWA 1B5LA 3HOUD 1Z92A 1F6FA 1HZIA 3G9VB 4ZS7A 1BP3A 3NCFA 1CD9A 5L6YC 5FLMD 4BBSD 4EXPA 2Q14A 2Z3QA 2Z3RA 5D72A 1PVHB 1Y6NL 2R92D 1V7NV 2B8ZA 2D48A 3IRHA 5IYBD 3H3VE 1AXIA 1GA3A 1Y1VD 3N0PA 1M4RA 5C3ED 1HIJA 3I4MD 1M4CA 1EMRA 4WRLB 4ZF7A 2B8YA 4A3BD 3QB7A 1RW5A 1M49A 1BGDA 1ETEA 2ERJD 4BY7D 4O9HA 1IK0A 1BCNA 3EJJA 5KNHI 4LRLA 4O6KA 1IARA 1N1FA 1EKUA 3UF5A 2CYKA 1BBNA 4DKEA 1ITLA 2O27A 5FUCA 4DKCA 3EW3A 3NPZA 1BGEA 2PSMA 1WCMD 3NCCA 4Z5RD 5IYDD 2L3OA 3DLQI 2JA6D 4A3CD 1I1RB 3N06A 3PIVA 4NN6A 4NI7A 3TGXB 4DKFA 2OQPA 5C4XD 4I77Z 3HHCA 4NN7A 4RS1A 2IL6A 3Q1SI 4A3LD 5TS9A 3QAZA 1NBPA 1EXZA 4PS4A 2INTA 1AU1A 1EVSA 4DOHA 4YDYI 4A3KD 3WCYI 3BPNA 2R7ZD 1IL6A 3INKC 5D70A 4A3DD 3D48P 1FYHA 1M4AA 3OQ3A 4EXNA 1ITMA 3UEZE 1RCBA 3DI3A 4A3ID 3HOWD 1RFBA 5C7XA 2HYMB 4NEMA 3D87A 5E4EA 2D9QA 4NI9A 3G6DA 1Y6ML 4NN5A 5D71A 1ITIA 1CN4C 2Q7NB 2B8XA 5C44D 1SCFA 1IRLA 1D9GA 3PIWA 1PY2A 3BPOA 3H0GD 2B90A 1HULA 1AX8A 2B91A 3L5XA 1ILKA 4NEJA 4CNIC 4FA8E 2B8UA 1M48A 2JA5D 1J7VL 2LAGA 1LK3A 2JA8D 2H24A 5IP7D 3HMXB 3D85C 1BUYA 1ALUA 2O26A 4BBRD 3HOVD 3PO3D 1V7MV 2L3YA 3HHRA 4A3ED 3UX9A 1LKIA 3OG6A 4A3MD 1PW6A 3LB6A 2JA7D 4YQXA 1HIKA 1M4BA 3NCEA 1PGRA 1KF9A 4DKDA 3HOZD 3DI2A 2B63D 1CSGA 2GMFA 3B5KA 1FG9A 3L5WI 2VUMD 3FKID 3S9DA 1A7MA 1IJZA 1BGCA 3LB6B 5D28B 3I4ND 2R93D 3PO2D 1GNCA 1P9MB 4A93D 3MZGA 3SE4B 3NCBA 1HWHA 1LQSL 4YUEC 3DGCL 2LMSA 3BESL 3HOXD 4NKQC 1INRA 3SE3B 1D9CA 4GRWA 5LQBA 1HGUA 1WU3I 1YKBA 2B5IA 3BPLA 1F45B 2KZ1A 1JLIA 2Q98A 3QB1A 1Y6KL 2XQBA 3HOYD 1M47A 4J4LC 1VLKA 4YPGC 2ILKA 1HWGA 4A3FD 3DUHC 2E9WC 1Y14A 4X51A 1CNT1 3VA2A 4BY1D 5D22A 4GS7A 4A3JD 3OG4A 3AYHA 1ITFA 1A22A 1CYLA 4A3GD 1EERA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1W D;  2C35 A;  5C44 D;  2R93 D;  3I4N D;  4BXX D;  3PO2 D;  4A93 D;  1WCM D;  5IYD D;  5IYC D;  2JA6 D;  4A3C D;  3H0G D;  5IP9 D;  2JA5 D;  4BY7 D;  3HOU D;  3HOX D;  2JA8 D;  5FLM D;  4BBS D;  5IP7 D;  5C4X D;  4BBR D;  3HOV D;  3PO3 D;  4A3L D;  2R92 D;  4A3E D;  5IYB D;  3H3V E;  1Y1V D;  4A3M D;  3HOY D;  5C3E D;  2JA7 D;  3I4M D;  4A3K D;  2R7Z D;  4A3B D;  4A3D D;  4A3F D;  1Y14 A;  4BY1 D;  4A3I D;  3HOW D;  3HOZ D;  2B63 D;  4A3J D;  3AYH A;  4A3G D;  2VUM D;  3FKI D; 
#chains in the Genus database with same CATH topology
 1Z7C A;  2C35 A;  4PYP A;  2O6I A;  3UF2 A;  5IP9 D;  5FLM D;  4IU8 A;  3N0P A;  4IKY A;  5C3E D;  1HIJ A;  1EMR A;  1M49 A;  5A2O A;  4D2D A;  4DKE A;  1N1F A;  4JRE A;  4TPG A;  5IYD D;  3DLQ I;  4A3C D;  4NI7 A;  4LDS A;  4XNI A;  4YBQ A;  3Q1S I;  1NBP A;  4PS4 A;  4DOH A;  2R7Z D;  3BPN A;  1M4A A;  1ITM A;  4J05 A;  5E4E A;  2D9Q A;  5EQH A;  5D71 A;  1CN4 C;  2B8X A;  5C44 D;  4U4V A;  1IRL A;  4U4T A;  3PIW A;  3BPO A;  3H0G D;  2JA5 D;  2B8U A;  1J7V L;  1LK3 A;  2H24 A;  5IP7 D;  3O7P A;  3UX9 A;  1PW6 A;  4YB9 D;  1M4B A;  1PGR A;  4IU9 A;  1KF9 A;  2GMF A;  1FG9 A;  3L5W I;  4A93 D;  3NCB A;  2LMS A;  3BES L;  1D9C A;  2B5I A;  3BPL A;  1JLI A;  2Q98 A;  3HOY D;  4YPG C;  4IKV A;  1HWG A;  2CFP A;  1CNT 1;  3VA2 A;  5D22 A;  4GS7 A;  1A22 A;  4APS A;  3QWR B;  1RHG A;  1QVN A;  1Z92 A;  4BBS D;  2Q14 A;  2R92 D;  1V7N V;  1GA3 A;  1M4R A;  3I4M D;  1M4C A;  2B8Y A;  4W6V A;  5GXB A;  4JR9 A;  1PV7 A;  3EJJ A;  2CYK A;  5FUC A;  4DKC A;  4OAA A;  3NPZ A;  2PSM A;  2L3O A;  1I1R B;  3N06 A;  4I77 Z;  3QAZ A;  4LEP A;  2INT A;  4YDY I;  4A3K D;  5D70 A;  4EXN A;  3UEZ E;  5C7X A;  4NEM A;  3D87 A;  4NI9 A;  1Y6M L;  2Y5Y A;  4NN5 A;  1ITI A;  1HUL A;  4NEJ A;  4CNI C;  4BY7 D;  1ILK A;  4TPJ A;  3HMX B;  3HOV D;  2O26 A;  3PO3 D;  5D58 A;  1HIK A;  3NCE A;  4Q65 A;  4ZWB A;  4GBY A;  5EQG A;  1A7M A;  1IJZ A;  1BGC A;  3MZG A;  1INR A;  1YKB A;  3QB1 A;  1Y6K L;  4J4L C;  4A3F D;  3DUH C;  4X51 A;  4A3J D;  3OG4 A;  1ITF A;  1EER A;  1Y1W D;  4MHL A;  4BXX D;  4ZWC A;  5FHX A;  1HUW A;  1B5L A;  3NCF A;  4GBZ A;  5D72 A;  2Z3Q A;  1PVH B;  2B8Z A;  5IYB D;  1Y1V D;  4TPH A;  4A3B D;  3QB7 A;  1BGD A;  4ZW9 A;  4O9H A;  1BCN A;  4LRL A;  1IAR A;  1EKU A;  1ITL A;  3EW3 A;  4Z5R D;  1WCM D;  3NCC A;  3PIV A;  4NN6 A;  4QIQ A;  3TGX B;  4DKF A;  2OQP A;  5C4X D;  3HHC A;  4NN7 A;  4A3L D;  5TS9 A;  1EXZ A;  1AU1 A;  1EVS A;  4UVM A;  2XUT A;  3WCY I;  1IL6 A;  1FYH A;  5A2N A;  4A3I D;  3DI3 A;  3HOW D;  3WDO A;  1RFB A;  2HYM B;  3O7Q A;  1SCF A;  1D9G A;  1AX8 A;  2B91 A;  3L5X A;  2CFQ A;  4FA8 E;  2JA8 D;  2LAG A;  1BUY A;  1ALU A;  4BBR D;  2L3Y A;  2JA7 D;  4YQX A;  1PV6 A;  3HOZ D;  2B63 D;  4ZYR A;  3FKI D;  3I4N D;  1P9M B;  3SE4 B;  1HWH A;  4YUE C;  3DGC L;  4NKQ C;  5LQB A;  1HGU A;  2KZ1 A;  2XQB A;  1M47 A;  1VLK A;  2ILK A;  1Y14 A;  4BY1 D;  1CYL A;  4A3G D;  4JA3 A;  5IYC D;  3QT2 C;  4U4W A;  3HOU D;  1F6F A;  1HZI A;  3G9V B;  4ZS7 A;  1BP3 A;  5L6Y C;  1CD9 A;  4EXP A;  2V8N A;  2Z3R A;  1Y6N L;  2D48 A;  3IRH A;  3H3V E;  1AXI A;  4WRL B;  4ZF7 A;  1RW5 A;  4IKW A;  1ETE A;  2ERJ D;  1IK0 A;  5KNH I;  4O6K A;  3UF5 A;  1BBN A;  2O27 A;  1BGE A;  2JA6 D;  4RS1 A;  2IL6 A;  5D6K A;  3INK C;  4A3D D;  3D48 P;  3OQ3 A;  1PW4 A;  1RCB A;  3G6D A;  2Q7N B;  4D2B A;  1PY2 A;  2B90 A;  4GC0 A;  1M48 A;  3D85 C;  1V7M V;  3HHR A;  4A3E D;  4IKX A;  4A3M D;  1LKI A;  3OG6 A;  3LB6 A;  4DKD A;  3DI2 A;  4D2C A;  1CSG A;  3B5K A;  2VUM D;  3S9D A;  4IKZ A;  2R93 D;  1GNC A;  3LB6 B;  5D28 B;  5D59 A;  3PO2 D;  1LQS L;  3HOX D;  3SE3 B;  4GRW A;  4OH3 A;  1WU3 I;  1F45 B;  4XNJ A;  2E9W C;  5C65 A;  5EQI A;  3AYH A; 
#chains in the Genus database with same CATH homology
 1Z7C A;  1Y1W D;  2C35 A;  3QWR B;  4MHL A;  4BXX D;  1RHG A;  1QVN A;  5IYC D;  2O6I A;  3UF2 A;  3QT2 C;  5FHX A;  5IP9 D;  1HUW A;  1B5L A;  3HOU D;  1Z92 A;  1F6F A;  1HZI A;  3G9V B;  4ZS7 A;  1BP3 A;  3NCF A;  1CD9 A;  5L6Y C;  5FLM D;  4BBS D;  4EXP A;  2Q14 A;  2Z3Q A;  2Z3R A;  5D72 A;  1PVH B;  1Y6N L;  2R92 D;  1V7N V;  2B8Z A;  2D48 A;  3IRH A;  5IYB D;  3H3V E;  1AXI A;  1GA3 A;  1Y1V D;  3N0P A;  1M4R A;  5C3E D;  1HIJ A;  3I4M D;  1M4C A;  1EMR A;  4WRL B;  4ZF7 A;  2B8Y A;  4A3B D;  3QB7 A;  1RW5 A;  1M49 A;  1BGD A;  1ETE A;  2ERJ D;  4BY7 D;  4O9H A;  1IK0 A;  1BCN A;  3EJJ A;  5KNH I;  4LRL A;  4O6K A;  1IAR A;  1N1F A;  1EKU A;  3UF5 A;  2CYK A;  1BBN A;  4DKE A;  1ITL A;  2O27 A;  5FUC A;  4DKC A;  3EW3 A;  3NPZ A;  1BGE A;  2PSM A;  1WCM D;  3NCC A;  4Z5R D;  5IYD D;  2L3O A;  3DLQ I;  2JA6 D;  4A3C D;  1I1R B;  3N06 A;  3PIV A;  4NN6 A;  4NI7 A;  3TGX B;  4DKF A;  2OQP A;  5C4X D;  4I77 Z;  3HHC A;  4NN7 A;  4RS1 A;  2IL6 A;  3Q1S I;  4A3L D;  5TS9 A;  3QAZ A;  1NBP A;  1EXZ A;  4PS4 A;  2INT A;  1AU1 A;  1EVS A;  4DOH A;  4YDY I;  4A3K D;  3WCY I;  3BPN A;  2R7Z D;  1IL6 A;  3INK C;  5D70 A;  4A3D D;  3D48 P;  1FYH A;  1M4A A;  3OQ3 A;  4EXN A;  1ITM A;  3UEZ E;  1RCB A;  3DI3 A;  4A3I D;  3HOW D;  1RFB A;  5C7X A;  2HYM B;  4NEM A;  3D87 A;  5E4E A;  2D9Q A;  4NI9 A;  3G6D A;  1Y6M L;  4NN5 A;  5D71 A;  1ITI A;  1CN4 C;  2Q7N B;  2B8X A;  5C44 D;  1SCF A;  1IRL A;  1D9G A;  3PIW A;  1PY2 A;  3BPO A;  3H0G D;  2B90 A;  1HUL A;  1AX8 A;  2B91 A;  3L5X A;  1ILK A;  4NEJ A;  4CNI C;  4FA8 E;  2B8U A;  1M48 A;  2JA5 D;  1J7V L;  2LAG A;  1LK3 A;  2JA8 D;  2H24 A;  5IP7 D;  3HMX B;  3D85 C;  1BUY A;  1ALU A;  2O26 A;  4BBR D;  3HOV D;  3PO3 D;  1V7M V;  2L3Y A;  3HHR A;  4A3E D;  3UX9 A;  1LKI A;  3OG6 A;  4A3M D;  1PW6 A;  3LB6 A;  2JA7 D;  4YQX A;  1HIK A;  1M4B A;  3NCE A;  1PGR A;  1KF9 A;  4DKD A;  3HOZ D;  3DI2 A;  2B63 D;  1CSG A;  2GMF A;  3B5K A;  1FG9 A;  3L5W I;  2VUM D;  3FKI D;  3S9D A;  1A7M A;  1IJZ A;  1BGC A;  3LB6 B;  5D28 B;  3I4N D;  2R93 D;  3PO2 D;  1GNC A;  1P9M B;  4A93 D;  3MZG A;  3SE4 B;  3NCB A;  1HWH A;  1LQS L;  4YUE C;  3DGC L;  2LMS A;  3BES L;  3HOX D;  4NKQ C;  1INR A;  3SE3 B;  1D9C A;  4GRW A;  5LQB A;  1HGU A;  1WU3 I;  1YKB A;  2B5I A;  3BPL A;  1F45 B;  2KZ1 A;  1JLI A;  2Q98 A;  3QB1 A;  1Y6K L;  2XQB A;  3HOY D;  1M47 A;  4J4L C;  1VLK A;  4YPG C;  2ILK A;  1HWG A;  4A3F D;  3DUH C;  2E9W C;  1Y14 A;  4X51 A;  1CNT 1;  3VA2 A;  4BY1 D;  5D22 A;  4GS7 A;  4A3J D;  3OG4 A;  3AYH A;  1ITF A;  1A22 A;  1CYL A;  4A3G D;  1EER A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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