3I4ND

8-oxoguanine containing rna polymerase ii elongation complex e
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
221
structure length
182
Chain Sequence
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKSETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription,transferase/dna-rna hybrid
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Molecular basis of transcriptional mutagenesis at 8-oxoguanine
pubmed doi rcsb
total genus 44
structure length 182
sequence length 221
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 3i4nD02
2JA6D 3I4MD 3PO3D 4A3ED 1Y14A 4A3JD 2C35A 3I4ND 5C4XD 1Y1WD 4BY1D 5IYCD 2JA8D 3HOVD 5C3ED 3HOYD 5IP7D 4A3GD 4A93D 3HOWD 2JA7D 3HOUD 2R93D 4BBSD 4A3ID 2R7ZD 3H3VE 4A3DD 4BXXD 1WCMD 3PO2D 5FLMD 2JA5D 3HOZD 3AYHA 4A3KD 2VUMD 2R92D 4A3BD 4BBRD 4A3LD 4A3FD 5C44D 3FKID 2B63D 5IP9D 4BY7D 1Y1VD 3H0GD 4A3CD 3HOXD 5IYBD 5IYDD 4A3MD
chains in the Genus database with same CATH superfamily
5D28B 3DI2A 5IP7D 1LK3A 2B8XA 1RCBA 3H3VE 4MHLA 4RS1A 4ZS7A 4EXPA 3NCEA 4UVMA 2Z3QA 2LAGA 2V8NA 1M47A 3IRHA 5LQBA 1YKBA 5D72A 3HOWD 2JA7D 1HWHA 5A2NA 3N06A 2B5IA 4NN5A 3G9VB 2R92D 1N1FA 1M4CA 1NBPA 2E9WC 4YB9D 1Y1WD 5E4EA 3UEZE 1BGDA 4DOHA 3QT2C 3MZGA 1WCMD 1M49A 4IU8A 1SCFA 3L5XA 3LB6B 4GRWA 1IJZA 3PO3D 5L6YC 4A3JD 1INRA 3I4ND 1BCNA 4BBSD 5A2OA 4DKFA 2CFPA 1CYLA 3AYHA 1PVHB 3WDOA 2LMSA 2D9QA 1HZIA 1BGEA 4GC0A 4IKZA 4U4WA 2KZ1A 3PIVA 5D58A 5C4XD 2C35A 3DUHC 3QB7A 5C3ED 4A93D 3OG6A 5D59A 4OAAA 1IARA 5C65A 1ITMA 4A3BD 4YUEC 3NCBA 5C44D 1EKUA 5TS9A 3PIWA 1BBNA 4YDYI 5IYCD 3HOVD 1ILKA 1M4AA 4DKEA 1IK0A 2O27A 4O9HA 1RFBA 3SE3B 1PW4A 4XNIA 4U4VA 3BPNA 1M4RA 3NCCA 5KNHI 3O7PA 3BPLA 4IU9A 5FHXA 3FKID 3HHCA 2CFQA 1AX8A 4ZWCA 1FG9A 4NEMA 1EMRA 1HIJA 2D48A 1HUWA 4TPGA 1RHGA 5GXBA 2B90A 2HYMB 5D6KA 1J7VL 3H0GD 2H24A 1BUYA 1M48A 4ZWBA 4D2BA 1PV7A 3HOYD 1HULA 1HWGA 1ALUA 4BXXD 2INTA 4ZYRA 3VA2A 3HHRA 1WU3I 3D87A 2Y5YA 4D2CA 1FYHA 4NI7A 4J05A 3S9DA 2Q98A 1Y14A 3BESL 3EJJA 4O6KA 1M4BA 3DLQI 1LQSL 4A3GD 3LB6A 4ZF7A 1A7MA 2L3YA 4I77Z 3D48P 5D71A 3B5KA 1D9CA 4TPHA 3G6DA 3UF2A 1B5LA 4JR9A 1QVNA 3TGXB 3EW3A 1D9GA 2B8UA 3NPZA 3QWRB 4A3MD 1LKIA 2B8ZA 4Q65A 3DGCL 4PYPA 4NN7A 2XUTA 2O6IA 2GMFA 1EXZA 4A3KD 4NI9A 1Z92A 4A3FD 3HMXB 3INKC 4BY7D 2ILKA 3O7QA 2ERJD 3Q1SI 4GS7A 4XNJA 4BY1D 1Y6NL 4GBZA 4D2DA 3HOUD 2R93D 1F45B 4DKCA 4GBYA 3OG4A 1PW6A 4IKYA 1VLKA 4EXNA 1JLIA 5FUCA 4QIQA 4A3CD 3HOXD 5IYBD 1CD9A 1PY2A 1GNCA 1ITIA 4Z5RD 4IKWA 1ITLA 4LDSA 1F6FA 5EQHA 2XQBA 4LEPA 1PV6A 2PSMA 2OQPA 1V7NV 2Q7NB 1ITFA 5EQIA 5IP9D 1Y1VD 4IKVA 2JA6D 3UX9A 3L5WI 4X51A 2JA8D 4W6VA 3QB1A 3UF5A 4JREA 1EVSA 4A3ID 2R7ZD 4WRLB 4IKXA 4FA8E 1CSGA 3HOZD 1EERA 4ZW9A 4DKDA 4CNIC 2Z3RA 4NKQC 1HGUA 1PGRA 3I4MD 4A3ED 2B91A 5D22A 5C7XA 1KF9A 2CYKA 1IRLA 4APSA 2L3OA 4A3DD 1I1RB 4PS4A 3SE4B 3PO2D 5FLMD 1RW5A 1Z7CA 4JA3A 4YBQA 1P9MB 4TPJA 1AU1A 3N0PA 3QAZA 4NEJA 4BBRD 5IYDD 1HIKA 1A22A 2Q14A 4YQXA 2IL6A 4LRLA 5D70A 1CN4C 1V7MV 3OQ3A 1IL6A 4J4LC 1Y6KL 4NN6A 4A3LD 2B63D 4OH3A 4YPGC 1BP3A 3NCFA 1Y6ML 1AXIA 3BPOA 1BGCA 3D85C 2JA5D 4U4TA 1CNT1 3WCYI 2VUMD 5EQGA 3DI3A 1ETEA 2O26A 2B8YA 1GA3A
chains in the Genus database with same CATH topology
2JA6D 3UX9A 3S9DA 2Q98A 1Y14A 3BESL 2C35A 3EJJA 3L5WI 4O6KA 4X51A 3DI2A 3DUHC 5D28B 2JA8D 3QB7A 1M4BA 5C3ED 3DLQI 1LQSL 1LK3A 5IP7D 3LB6A 3QB1A 4A3GD 4A93D 2B8XA 3OG6A 3UF5A 4ZF7A 1EVSA 4A3ID 1RCBA 3H3VE 2R7ZD 4WRLB 1A7MA 2L3YA 4I77Z 4FA8E 3D48P 1CSGA 5D71A 1IARA 3HOZD 3B5KA 1EERA 1ITMA 4MHLA 4DKDA 1D9CA 4RS1A 2Z3RA 4CNIC 3G6DA 4ZS7A 4EXPA 4NKQC 3UF2A 4YUEC 1B5LA 4A3BD 3NCBA 3NCEA 1QVNA 3TGXB 5C44D 1EKUA 3EW3A 5TS9A 1D9GA 5C4XD 2Z3QA 1HGUA 2LAGA 1PGRA 2B8UA 3NPZA 3PIWA 3QWRB 4A3MD 1M47A 3I4MD 1LKIA 3IRHA 4A3ED 2B91A 2B8ZA 5D22A 5LQBA 5C7XA 1BBNA 4YDYI 5IYCD 3HOVD 1ILKA 1M4AA 4DKEA 1KF9A 1IK0A 2CYKA 1IRLA 1YKBA 2O27A 3DGCL 5D72A 3HOWD 4O9HA 2JA7D 1HWHA 1RFBA 2L3OA 3SE3B 4A3DD 4NN7A 1I1RB 3N06A 4PS4A 3SE4B 3PO2D 5FLMD 3BPNA 2O6IA 2B5IA 1RW5A 2GMFA 4NN5A 1EXZA 4A3KD 3G9VB 4NI9A 1M4RA 2R92D 1Z7CA 3NCCA 5KNHI 1Z92A 3BPLA 5FHXA 4A3FD 3HMXB 3FKID 3HHCA 3INKC 4BY7D 1AX8A 2ILKA 2ERJD 1P9MB 1AU1A 1N1FA 3N0PA 1M4CA 1NBPA 1FG9A 2E9WC 3Q1SI 3QAZA 1HIKA 4NEJA 4GS7A 4NEMA 1Y1WD 4BY1D 1EMRA 5E4EA 1A22A 1BGDA 3UEZE 1Y6NL 2Q14A 3QT2C 4DOHA 4YQXA 2IL6A 3HOUD 3MZGA 2R93D 1F45B 1HIJA 2D48A 4LRLA 5D70A 1WCMD 4DKCA 1CN4C 1HUWA 1V7MV 3OQ3A 1IL6A 3OG4A 1RHGA 2B90A 4J4LC 1PW6A 2HYMB 1M49A 1VLKA 1Y6KL 1J7VL 4NN6A 1JLIA 5FUCA 4BBRD 4EXNA 5IYDD 2B63D 4A3LD 1SCFA 3L5XA 3LB6B 4GRWA 1IJZA 3H0GD 4A3CD 3HOXD 2H24A 5IYBD 1BUYA 1M48A 1CD9A 3PO3D 4YPGC 1BP3A 1PY2A 5L6YC 1INRA 4A3JD 3I4ND 3NCFA 3HOYD 1BCNA 1Y6ML 1AXIA 1HULA 1GNCA 3BPOA 1HWGA 4BBSD 1ITIA 4Z5RD 1BGCA 1ALUA 4DKFA 4BXXD 3D85C 1ITLA 2INTA 1CYLA 2JA5D 3AYHA 1PVHB 3VA2A 1F6FA 1CNT1 3HHRA 3WCYI 2VUMD 2LMSA 2XQBA 2D9QA 1HZIA 2PSMA 2OQPA 1V7NV 2Q7NB 3DI3A 1ITFA 1WU3I 3D87A 1ETEA 2O26A 1BGEA 5IP9D 1Y1VD 2B8YA 1FYHA 4NI7A 1GA3A 2KZ1A 3PIVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA6 D;  3I4M D;  3PO3 D;  4A3E D;  1Y14 A;  4A3J D;  2C35 A;  3I4N D;  5C4X D;  1Y1W D;  4BY1 D;  5IYC D;  2JA8 D;  3HOV D;  5C3E D;  3HOY D;  5IP7 D;  4A3G D;  4A93 D;  3HOW D;  2JA7 D;  3HOU D;  2R93 D;  4BBS D;  4A3I D;  2R7Z D;  3H3V E;  4A3D D;  4BXX D;  1WCM D;  3PO2 D;  5FLM D;  2JA5 D;  3HOZ D;  3AYH A;  4A3K D;  2VUM D;  2R92 D;  4A3B D;  4BBR D;  4A3L D;  4A3F D;  5C44 D;  3FKI D;  2B63 D;  5IP9 D;  4BY7 D;  1Y1V D;  3H0G D;  4A3C D;  3HOX D;  5IYB D;  5IYD D;  4A3M D; 
#chains in the Genus database with same CATH topology
 5D28 B;  3DI2 A;  5IP7 D;  1LK3 A;  2B8X A;  1RCB A;  3H3V E;  4MHL A;  4RS1 A;  4ZS7 A;  4EXP A;  3NCE A;  4UVM A;  2Z3Q A;  2LAG A;  2V8N A;  1M47 A;  3IRH A;  5LQB A;  1YKB A;  5D72 A;  3HOW D;  2JA7 D;  1HWH A;  5A2N A;  3N06 A;  2B5I A;  4NN5 A;  3G9V B;  2R92 D;  1N1F A;  1M4C A;  1NBP A;  2E9W C;  4YB9 D;  1Y1W D;  5E4E A;  3UEZ E;  1BGD A;  4DOH A;  3QT2 C;  3MZG A;  1WCM D;  1M49 A;  4IU8 A;  1SCF A;  3L5X A;  3LB6 B;  4GRW A;  1IJZ A;  3PO3 D;  5L6Y C;  4A3J D;  1INR A;  3I4N D;  1BCN A;  4BBS D;  5A2O A;  4DKF A;  2CFP A;  1CYL A;  3AYH A;  1PVH B;  3WDO A;  2LMS A;  2D9Q A;  1HZI A;  1BGE A;  4GC0 A;  4IKZ A;  4U4W A;  2KZ1 A;  3PIV A;  5D58 A;  5C4X D;  2C35 A;  3DUH C;  3QB7 A;  5C3E D;  4A93 D;  3OG6 A;  5D59 A;  4OAA A;  1IAR A;  5C65 A;  1ITM A;  4A3B D;  4YUE C;  3NCB A;  5C44 D;  1EKU A;  5TS9 A;  3PIW A;  1BBN A;  4YDY I;  5IYC D;  3HOV D;  1ILK A;  1M4A A;  4DKE A;  1IK0 A;  2O27 A;  4O9H A;  1RFB A;  3SE3 B;  1PW4 A;  4XNI A;  4U4V A;  3BPN A;  1M4R A;  3NCC A;  5KNH I;  3O7P A;  3BPL A;  4IU9 A;  5FHX A;  3FKI D;  3HHC A;  2CFQ A;  1AX8 A;  4ZWC A;  1FG9 A;  4NEM A;  1EMR A;  1HIJ A;  2D48 A;  1HUW A;  4TPG A;  1RHG A;  5GXB A;  2B90 A;  2HYM B;  5D6K A;  1J7V L;  3H0G D;  2H24 A;  1BUY A;  1M48 A;  4ZWB A;  4D2B A;  1PV7 A;  3HOY D;  1HUL A;  1HWG A;  1ALU A;  4BXX D;  2INT A;  4ZYR A;  3VA2 A;  3HHR A;  1WU3 I;  3D87 A;  2Y5Y A;  4D2C A;  1FYH A;  4NI7 A;  4J05 A;  3S9D A;  2Q98 A;  1Y14 A;  3BES L;  3EJJ A;  4O6K A;  1M4B A;  3DLQ I;  1LQS L;  4A3G D;  3LB6 A;  4ZF7 A;  1A7M A;  2L3Y A;  4I77 Z;  3D48 P;  5D71 A;  3B5K A;  1D9C A;  4TPH A;  3G6D A;  3UF2 A;  1B5L A;  4JR9 A;  1QVN A;  3TGX B;  3EW3 A;  1D9G A;  2B8U A;  3NPZ A;  3QWR B;  4A3M D;  1LKI A;  2B8Z A;  4Q65 A;  3DGC L;  4PYP A;  4NN7 A;  2XUT A;  2O6I A;  2GMF A;  1EXZ A;  4A3K D;  4NI9 A;  1Z92 A;  4A3F D;  3HMX B;  3INK C;  4BY7 D;  2ILK A;  3O7Q A;  2ERJ D;  3Q1S I;  4GS7 A;  4XNJ A;  4BY1 D;  1Y6N L;  4GBZ A;  4D2D A;  3HOU D;  2R93 D;  1F45 B;  4DKC A;  4GBY A;  3OG4 A;  1PW6 A;  4IKY A;  1VLK A;  4EXN A;  1JLI A;  5FUC A;  4QIQ A;  4A3C D;  3HOX D;  5IYB D;  1CD9 A;  1PY2 A;  1GNC A;  1ITI A;  4Z5R D;  4IKW A;  1ITL A;  4LDS A;  1F6F A;  5EQH A;  2XQB A;  4LEP A;  1PV6 A;  2PSM A;  2OQP A;  1V7N V;  2Q7N B;  1ITF A;  5EQI A;  5IP9 D;  1Y1V D;  4IKV A;  2JA6 D;  3UX9 A;  3L5W I;  4X51 A;  2JA8 D;  4W6V A;  3QB1 A;  3UF5 A;  4JRE A;  1EVS A;  4A3I D;  2R7Z D;  4WRL B;  4IKX A;  4FA8 E;  1CSG A;  3HOZ D;  1EER A;  4ZW9 A;  4DKD A;  4CNI C;  2Z3R A;  4NKQ C;  1HGU A;  1PGR A;  3I4M D;  4A3E D;  2B91 A;  5D22 A;  5C7X A;  1KF9 A;  2CYK A;  1IRL A;  4APS A;  2L3O A;  4A3D D;  1I1R B;  4PS4 A;  3SE4 B;  3PO2 D;  5FLM D;  1RW5 A;  1Z7C A;  4JA3 A;  4YBQ A;  1P9M B;  4TPJ A;  1AU1 A;  3N0P A;  3QAZ A;  4NEJ A;  4BBR D;  5IYD D;  1HIK A;  1A22 A;  2Q14 A;  4YQX A;  2IL6 A;  4LRL A;  5D70 A;  1CN4 C;  1V7M V;  3OQ3 A;  1IL6 A;  4J4L C;  1Y6K L;  4NN6 A;  4A3L D;  2B63 D;  4OH3 A;  4YPG C;  1BP3 A;  3NCF A;  1Y6M L;  1AXI A;  3BPO A;  1BGC A;  3D85 C;  2JA5 D;  4U4T A;  1CNT 1;  3WCY I;  2VUM D;  5EQG A;  3DI3 A;  1ETE A;  2O26 A;  2B8Y A;  1GA3 A; 
#chains in the Genus database with same CATH homology
 2JA6 D;  3UX9 A;  3S9D A;  2Q98 A;  1Y14 A;  3BES L;  2C35 A;  3EJJ A;  3L5W I;  4O6K A;  4X51 A;  3DI2 A;  3DUH C;  5D28 B;  2JA8 D;  3QB7 A;  1M4B A;  5C3E D;  3DLQ I;  1LQS L;  1LK3 A;  5IP7 D;  3LB6 A;  3QB1 A;  4A3G D;  4A93 D;  2B8X A;  3OG6 A;  3UF5 A;  4ZF7 A;  1EVS A;  4A3I D;  1RCB A;  3H3V E;  2R7Z D;  4WRL B;  1A7M A;  2L3Y A;  4I77 Z;  4FA8 E;  3D48 P;  1CSG A;  5D71 A;  1IAR A;  3HOZ D;  3B5K A;  1EER A;  1ITM A;  4MHL A;  4DKD A;  1D9C A;  4RS1 A;  2Z3R A;  4CNI C;  3G6D A;  4ZS7 A;  4EXP A;  4NKQ C;  3UF2 A;  4YUE C;  1B5L A;  4A3B D;  3NCB A;  3NCE A;  1QVN A;  3TGX B;  5C44 D;  1EKU A;  3EW3 A;  5TS9 A;  1D9G A;  5C4X D;  2Z3Q A;  1HGU A;  2LAG A;  1PGR A;  2B8U A;  3NPZ A;  3PIW A;  3QWR B;  4A3M D;  1M47 A;  3I4M D;  1LKI A;  3IRH A;  4A3E D;  2B91 A;  2B8Z A;  5D22 A;  5LQB A;  5C7X A;  1BBN A;  4YDY I;  5IYC D;  3HOV D;  1ILK A;  1M4A A;  4DKE A;  1KF9 A;  1IK0 A;  2CYK A;  1IRL A;  1YKB A;  2O27 A;  3DGC L;  5D72 A;  3HOW D;  4O9H A;  2JA7 D;  1HWH A;  1RFB A;  2L3O A;  3SE3 B;  4A3D D;  4NN7 A;  1I1R B;  3N06 A;  4PS4 A;  3SE4 B;  3PO2 D;  5FLM D;  3BPN A;  2O6I A;  2B5I A;  1RW5 A;  2GMF A;  4NN5 A;  1EXZ A;  4A3K D;  3G9V B;  4NI9 A;  1M4R A;  2R92 D;  1Z7C A;  3NCC A;  5KNH I;  1Z92 A;  3BPL A;  5FHX A;  4A3F D;  3HMX B;  3FKI D;  3HHC A;  3INK C;  4BY7 D;  1AX8 A;  2ILK A;  2ERJ D;  1P9M B;  1AU1 A;  1N1F A;  3N0P A;  1M4C A;  1NBP A;  1FG9 A;  2E9W C;  3Q1S I;  3QAZ A;  1HIK A;  4NEJ A;  4GS7 A;  4NEM A;  1Y1W D;  4BY1 D;  1EMR A;  5E4E A;  1A22 A;  1BGD A;  3UEZ E;  1Y6N L;  2Q14 A;  3QT2 C;  4DOH A;  4YQX A;  2IL6 A;  3HOU D;  3MZG A;  2R93 D;  1F45 B;  1HIJ A;  2D48 A;  4LRL A;  5D70 A;  1WCM D;  4DKC A;  1CN4 C;  1HUW A;  1V7M V;  3OQ3 A;  1IL6 A;  3OG4 A;  1RHG A;  2B90 A;  4J4L C;  1PW6 A;  2HYM B;  1M49 A;  1VLK A;  1Y6K L;  1J7V L;  4NN6 A;  1JLI A;  5FUC A;  4BBR D;  4EXN A;  5IYD D;  2B63 D;  4A3L D;  1SCF A;  3L5X A;  3LB6 B;  4GRW A;  1IJZ A;  3H0G D;  4A3C D;  3HOX D;  2H24 A;  5IYB D;  1BUY A;  1M48 A;  1CD9 A;  3PO3 D;  4YPG C;  1BP3 A;  1PY2 A;  5L6Y C;  1INR A;  4A3J D;  3I4N D;  3NCF A;  3HOY D;  1BCN A;  1Y6M L;  1AXI A;  1HUL A;  1GNC A;  3BPO A;  1HWG A;  4BBS D;  1ITI A;  4Z5R D;  1BGC A;  1ALU A;  4DKF A;  4BXX D;  3D85 C;  1ITL A;  2INT A;  1CYL A;  2JA5 D;  3AYH A;  1PVH B;  3VA2 A;  1F6F A;  1CNT 1;  3HHR A;  3WCY I;  2VUM D;  2LMS A;  2XQB A;  2D9Q A;  1HZI A;  2PSM A;  2OQP A;  1V7N V;  2Q7N B;  3DI3 A;  1ITF A;  1WU3 I;  3D87 A;  1ETE A;  2O26 A;  1BGE A;  5IP9 D;  1Y1V D;  2B8Y A;  1FYH A;  4NI7 A;  1GA3 A;  2KZ1 A;  3PIV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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