4GBZA

The structure of the mfs (major facilitator superfamily) proton:xylose symporter xyle bound to d-glucose
Total Genus 198
50100150200250300350400450050100150200
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
475
structure length
475
Chain Sequence
YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-29)AH7 (197-204)AH6 (160-186)3H1 (30-34)TI3 (190-193)AH2 (35-43)TI2 (119-122)3H2 (44-46)EMPTYAH3 (50-82)AH8 (206-218)AH4 (84-104)TIV1 (106-109)TIV3 (111-114)TIV4 (113-116)AH5 (125-153)AH18 (404-424)TI6 (400-403)TIV5 (156-159)O1 (307-309)AH9 (224-230)AH11 (245-267)TIV7 (242-245)TII1 (466-469)AH21 (471-475)AH12 (277-291)TI5 (271-274)TIV11 (385-388)AH13 (293-307)AH14 (311-339)AH16 (370-385)AH17 (388-398)AH20 (443-462)3H5 (427-429)TIV13 (424-427)TI1 (104-107)3H4 (193-195)AH10 (233-242)AH15 (341-365)AH19 (431-440)3H3 (122-124)Updating...
connected with : NaN
molecule tags Transport protein
source organism Escherichia coli
publication title Crystal structure of a bacterial homologue of glucose transporters GLUT1-4.
pubmed doi rcsb
molecule keywords D-xylose-proton symporter
total genus 198
structure length 475
sequence length 475
ec nomenclature
pdb deposition date 2012-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00083 Sugar_tr Sugar (and other) transporter
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4gbzA01
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4gbzA02
4XNJA 4YB9D 4GBZA 4JA3A 5D6KA 5EQGA 4W6VA 4JREA 5A2OA 2Y5YA 4TPGA 4U4VA 4QIQA 4IKZA 5D59A 2XUTA 2CFQA 4IKVA 4Q65A 5GXBA 5EQHA 4D2DA 4PYPA 4ZYRA 1PV7A 3O7PA 4D2CA 4J05A 4U4WA 4JR9A 4OH3A 4ZWCA 5C65A 4APSA 4XNIA 4IKYA 4UVMA 5EQIA 1PV6A 4GBYA 4TPHA 5D58A 4LEPA 4D2BA 4LDSA 3WDOA 2V8NA 4TPJA 4ZWBA 4IKXA 1PW4A 4IU8A 2CFPA 4ZW9A 4IU9A 3O7QA 4OAAA 4GC0A 4U4TA 4YBQA 5A2NA 4IKWA
chains in the Genus database with same CATH superfamily
4GBZA 1Y14A 5IP7D 5D59A 1IL6A 3BPLA 3MZGA 1ITFA 2JA6D 5KNHI 1CNT1 4NEMA 4TPHA 3OG4A 4NKQC 3UX9A 1F45B 3QB1A 3L5XA 1QVNA 3S9DA 4W6VA 4IKZA 4IKVA 3TGXB 3HOXD 1M4BA 3OQ3A 4YDYI 1IJZA 4DKEA 4DKDA 5D28B 3DI2A 4YBQA 1ITIA 4IKWA 2CYKA 4ZF7A 1HZIA 4TPGA 1PGRA 1ITLA 4U4WA 1GNCA 2JA5D 1D9GA 1CSGA 4UVMA 3AYHA 2Q98A 4A3LD 3VA2A 4NN7A 1EVSA 1RCBA 3H0GD 5IP9D 4BBSD 1HULA 2D9QA 1NBPA 3DGCL 1V7MV 4PS4A 5D71A 2Z3QA 4PYPA 1ILKA 1Y1VD 3LB6A 3NCEA 4X51A 4YQXA 4I77Z 3B5KA 2E9WC 2D48A 1V7NV 4RS1A 5EQGA 3EW3A 1INRA 1EXZA 5TS9A 3INKC 1J7VL 1BP3A 2Z3RA 2R93D 2O6IA 1M48A 2L3YA 1HGUA 3PIWA 5D72A 4IKYA 2O26A 1Z92A 3PIVA 5D58A 3HOUD 4LRLA 3BPOA 1JLIA 5IYBD 5IYCD 2LMSA 5A2NA 3HMXB 2HYMB 4NN5A 1BCNA 2VUMD 4OH3A 1Y1WD 4APSA 2GMFA 1PW6A 5D70A 1LQSL 2Q7NB 2B8YA 3DI3A 4A3MD 3SE3B 4NI7A 5D22A 5D6KA 4DKFA 4U4VA 3HOZD 2XUTA 3UEZE 1EMRA 1WCMD 4A3GD 1BGCA 4NI9A 3DLQI 5FHXA 5LQBA 1VLKA 3WDOA 4ZW9A 2KZ1A 2JA7D 5C4XD 1HIJA 1M4RA 3UF2A 1IK0A 1P9MB 4BY1D 3H3VE 3FKID 2CFQA 1CN4C 2B8ZA 1AX8A 1A7MA 2H24A 4A3JD 1CYLA 1WU3I 3HOWD 4NEJA 2CFPA 3UF5A 3NCFA 3IRHA 2B8UA 3LB6B 3L5WI 2B90A 3QT2C 3HHRA 4ZYRA 4A3BD 1YKBA 1M49A 3PO3D 4DKCA 4MHLA 4ZWBA 2B91A 1SCFA 4WRLB 1LKIA 3PO2D 4BBRD 1IRLA 1M4CA 1A22A 3NCCA 2V8NA 4TPJA 4IKXA 4IU8A 4GRWA 4A3CD 1HUWA 4XNJA 2Q14A 4YB9D 2JA8D 1RFBA 3I4MD 2XQBA 1HIKA 1ALUA 4YPGC 5GXBA 5EQHA 5FLMD 4J05A 2ILKA 4CNIC 4J4LC 4FA8E 1KF9A 1IARA 4XNIA 3N06A 1EERA 2R92D 4O9HA 5L6YC 4EXNA 1D9CA 4EXPA 2IL6A 1BGDA 4A3ED 2L3OA 4D2DA 1RHGA 4D2CA 3I4ND 4A3ID 4JR9A 3QWRB 5EQIA 4OAAA 1Y6KL 3QAZA 4BXXD 2C35A 3NPZA 1Y6NL 4QIQA 3D48P 4A3KD 1AU1A 1ITMA 3QB7A 5C65A 2OQPA 2B8XA 1BGEA 1PW4A 4BY7D 2INTA 4U4TA 5E4EA 1N1FA 3Q1SI 3HHCA 3OG6A 4YUEC 2R7ZD 1Y6ML 5A2OA 4A3DD 5C3ED 4Q65A 2PSMA 2LAGA 1FYHA 4A3FD 3D87A 3NCBA 5IYDD 5FUCA 1CD9A 2O27A 3EJJA 1I1RB 1ETEA 4IU9A 1RW5A 3O7QA 3HOYD 4A93D 1HWGA 1PY2A 4JA3A 3SE4B 2ERJD 1FG9A 4GS7A 1PVHB 4NN6A 4ZS7A 1BBNA 1HWHA 3BESL 4ZWCA 4Z5RD 3DUHC 1PV6A 4GBYA 4LEPA 4D2BA 3HOVD 1B5LA 3WCYI 1EKUA 1AXIA 4GC0A 3BPNA 1M4AA 1M47A 3D85C 5C44D 4JREA 2Y5YA 1GA3A 3G9VB 1Z7CA 1PV7A 3O7PA 5C7XA 1LK3A 1F6FA 3G6DA 2B5IA 1BUYA 4LDSA 4DOHA 2B63D 3N0PA 4O6KA
chains in the Genus database with same CATH topology
4XNJA 4YB9D 4GBZA 4JA3A 5D6KA 5EQGA 4W6VA 4JREA 5A2OA 2Y5YA 4TPGA 4U4VA 4QIQA 4IKZA 5D59A 2XUTA 2CFQA 4IKVA 4Q65A 5GXBA 5EQHA 4D2DA 4PYPA 4ZYRA 1PV7A 3O7PA 4D2CA 4J05A 4U4WA 4JR9A 4OH3A 4ZWCA 5C65A 4APSA 4XNIA 4IKYA 4UVMA 5EQIA 1PV6A 4GBYA 4TPHA 5D58A 4LEPA 4D2BA 4LDSA 3WDOA 2V8NA 4TPJA 4ZWBA 4IKXA 1PW4A 4IU8A 2CFPA 4ZW9A 4IU9A 3O7QA 4OAAA 4GC0A 4U4TA 4YBQA 5A2NA 4IKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNJ A;  4YB9 D;  4GBZ A;  4JA3 A;  5D6K A;  5EQG A;  4W6V A;  4JRE A;  5A2O A;  2Y5Y A;  4TPG A;  4U4V A;  4QIQ A;  4IKZ A;  5D59 A;  2XUT A;  2CFQ A;  4IKV A;  4Q65 A;  5GXB A;  5EQH A;  4D2D A;  4PYP A;  4ZYR A;  1PV7 A;  3O7P A;  4D2C A;  4J05 A;  4U4W A;  4JR9 A;  4OH3 A;  4ZWC A;  5C65 A;  4APS A;  4XNI A;  4IKY A;  4UVM A;  5EQI A;  1PV6 A;  4GBY A;  4TPH A;  5D58 A;  4LEP A;  4D2B A;  4LDS A;  3WDO A;  2V8N A;  4TPJ A;  4ZWB A;  4IKX A;  1PW4 A;  4IU8 A;  2CFP A;  4ZW9 A;  4IU9 A;  3O7Q A;  4OAA A;  4GC0 A;  4U4T A;  4YBQ A;  5A2N A;  4IKW A; 
#chains in the Genus database with same CATH topology
 4GBZ A;  1Y14 A;  5IP7 D;  5D59 A;  1IL6 A;  3BPL A;  3MZG A;  1ITF A;  2JA6 D;  5KNH I;  1CNT 1;  4NEM A;  4TPH A;  3OG4 A;  4NKQ C;  3UX9 A;  1F45 B;  3QB1 A;  3L5X A;  1QVN A;  3S9D A;  4W6V A;  4IKZ A;  4IKV A;  3TGX B;  3HOX D;  1M4B A;  3OQ3 A;  4YDY I;  1IJZ A;  4DKE A;  4DKD A;  5D28 B;  3DI2 A;  4YBQ A;  1ITI A;  4IKW A;  2CYK A;  4ZF7 A;  1HZI A;  4TPG A;  1PGR A;  1ITL A;  4U4W A;  1GNC A;  2JA5 D;  1D9G A;  1CSG A;  4UVM A;  3AYH A;  2Q98 A;  4A3L D;  3VA2 A;  4NN7 A;  1EVS A;  1RCB A;  3H0G D;  5IP9 D;  4BBS D;  1HUL A;  2D9Q A;  1NBP A;  3DGC L;  1V7M V;  4PS4 A;  5D71 A;  2Z3Q A;  4PYP A;  1ILK A;  1Y1V D;  3LB6 A;  3NCE A;  4X51 A;  4YQX A;  4I77 Z;  3B5K A;  2E9W C;  2D48 A;  1V7N V;  4RS1 A;  5EQG A;  3EW3 A;  1INR A;  1EXZ A;  5TS9 A;  3INK C;  1J7V L;  1BP3 A;  2Z3R A;  2R93 D;  2O6I A;  1M48 A;  2L3Y A;  1HGU A;  3PIW A;  5D72 A;  4IKY A;  2O26 A;  1Z92 A;  3PIV A;  5D58 A;  3HOU D;  4LRL A;  3BPO A;  1JLI A;  5IYB D;  5IYC D;  2LMS A;  5A2N A;  3HMX B;  2HYM B;  4NN5 A;  1BCN A;  2VUM D;  4OH3 A;  1Y1W D;  4APS A;  2GMF A;  1PW6 A;  5D70 A;  1LQS L;  2Q7N B;  2B8Y A;  3DI3 A;  4A3M D;  3SE3 B;  4NI7 A;  5D22 A;  5D6K A;  4DKF A;  4U4V A;  3HOZ D;  2XUT A;  3UEZ E;  1EMR A;  1WCM D;  4A3G D;  1BGC A;  4NI9 A;  3DLQ I;  5FHX A;  5LQB A;  1VLK A;  3WDO A;  4ZW9 A;  2KZ1 A;  2JA7 D;  5C4X D;  1HIJ A;  1M4R A;  3UF2 A;  1IK0 A;  1P9M B;  4BY1 D;  3H3V E;  3FKI D;  2CFQ A;  1CN4 C;  2B8Z A;  1AX8 A;  1A7M A;  2H24 A;  4A3J D;  1CYL A;  1WU3 I;  3HOW D;  4NEJ A;  2CFP A;  3UF5 A;  3NCF A;  3IRH A;  2B8U A;  3LB6 B;  3L5W I;  2B90 A;  3QT2 C;  3HHR A;  4ZYR A;  4A3B D;  1YKB A;  1M49 A;  3PO3 D;  4DKC A;  4MHL A;  4ZWB A;  2B91 A;  1SCF A;  4WRL B;  1LKI A;  3PO2 D;  4BBR D;  1IRL A;  1M4C A;  1A22 A;  3NCC A;  2V8N A;  4TPJ A;  4IKX A;  4IU8 A;  4GRW A;  4A3C D;  1HUW A;  4XNJ A;  2Q14 A;  4YB9 D;  2JA8 D;  1RFB A;  3I4M D;  2XQB A;  1HIK A;  1ALU A;  4YPG C;  5GXB A;  5EQH A;  5FLM D;  4J05 A;  2ILK A;  4CNI C;  4J4L C;  4FA8 E;  1KF9 A;  1IAR A;  4XNI A;  3N06 A;  1EER A;  2R92 D;  4O9H A;  5L6Y C;  4EXN A;  1D9C A;  4EXP A;  2IL6 A;  1BGD A;  4A3E D;  2L3O A;  4D2D A;  1RHG A;  4D2C A;  3I4N D;  4A3I D;  4JR9 A;  3QWR B;  5EQI A;  4OAA A;  1Y6K L;  3QAZ A;  4BXX D;  2C35 A;  3NPZ A;  1Y6N L;  4QIQ A;  3D48 P;  4A3K D;  1AU1 A;  1ITM A;  3QB7 A;  5C65 A;  2OQP A;  2B8X A;  1BGE A;  1PW4 A;  4BY7 D;  2INT A;  4U4T A;  5E4E A;  1N1F A;  3Q1S I;  3HHC A;  3OG6 A;  4YUE C;  2R7Z D;  1Y6M L;  5A2O A;  4A3D D;  5C3E D;  4Q65 A;  2PSM A;  2LAG A;  1FYH A;  4A3F D;  3D87 A;  3NCB A;  5IYD D;  5FUC A;  1CD9 A;  2O27 A;  3EJJ A;  1I1R B;  1ETE A;  4IU9 A;  1RW5 A;  3O7Q A;  3HOY D;  4A93 D;  1HWG A;  1PY2 A;  4JA3 A;  3SE4 B;  2ERJ D;  1FG9 A;  4GS7 A;  1PVH B;  4NN6 A;  4ZS7 A;  1BBN A;  1HWH A;  3BES L;  4ZWC A;  4Z5R D;  3DUH C;  1PV6 A;  4GBY A;  4LEP A;  4D2B A;  3HOV D;  1B5L A;  3WCY I;  1EKU A;  1AXI A;  4GC0 A;  3BPN A;  1M4A A;  1M47 A;  3D85 C;  5C44 D;  4JRE A;  2Y5Y A;  1GA3 A;  3G9V B;  1Z7C A;  1PV7 A;  3O7P A;  5C7X A;  1LK3 A;  1F6F A;  3G6D A;  2B5I A;  1BUY A;  4LDS A;  4DOH A;  2B63 D;  3N0P A;  4O6K A; 
#chains in the Genus database with same CATH homology
 4XNJ A;  4YB9 D;  4GBZ A;  4JA3 A;  5D6K A;  5EQG A;  4W6V A;  4JRE A;  5A2O A;  2Y5Y A;  4TPG A;  4U4V A;  4QIQ A;  4IKZ A;  5D59 A;  2XUT A;  2CFQ A;  4IKV A;  4Q65 A;  5GXB A;  5EQH A;  4D2D A;  4PYP A;  4ZYR A;  1PV7 A;  3O7P A;  4D2C A;  4J05 A;  4U4W A;  4JR9 A;  4OH3 A;  4ZWC A;  5C65 A;  4APS A;  4XNI A;  4IKY A;  4UVM A;  5EQI A;  1PV6 A;  4GBY A;  4TPH A;  5D58 A;  4LEP A;  4D2B A;  4LDS A;  3WDO A;  2V8N A;  4TPJ A;  4ZWB A;  4IKX A;  1PW4 A;  4IU8 A;  2CFP A;  4ZW9 A;  4IU9 A;  3O7Q A;  4OAA A;  4GC0 A;  4U4T A;  4YBQ A;  5A2N A;  4IKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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