4IKWA

Crystal structure of peptide transporter pot in complex with sulfate
Total Genus 198
50100150200250300350400450050100150200
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
492
structure length
492
Chain Sequence
SIDKQQIAASVPQRGFFGHPKGLFTLFFTEFWERFSYYGMRAILVYYMYYEVSKGGLGLDEHLALAIMSIYGALVYMSGIIGGWLADRVFGTSRAVFYGGLLIMAGHIALAIPGGVAALFVSMALIVLGTGLLKPNVSSIVGDMYKPGDDRRDAGFSIFYMGINLGAFLAPLVVGTAGMKYNFHLGFGLAAVGMFLGLVVFVATRKKNLGLAGTYVPNPLTPAEKKKAAAIMAVGAVVIAVLLAILIPNGWFTVETFISLVGILGIIIPIIYFVVMYRSPKTTAEERSRVIAYIPLFVASAMFWAIQEQGSTILANYADKRTQLDVAGIHLSPAWFQSLNPLFIIILAPVFAWMWVKLGKRQPTIPQKFALGLLFAGLSFIVILVPGHLSGGGLVHPIWLVLSYFIVVLGELCLSPVGLSATTKLAPAAFSAQTMSLWFLSNAAAQAINAQLVRFYTPENETAYFGTIGGAALVLGLILLAIAPRIGRLMKG
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
publication title Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT
pubmed doi rcsb
molecule keywords Di-tripeptide ABC transporter (Permease)
molecule tags Transport protein
source organism Geobacillus kaustophilus
total genus 198
structure length 492
sequence length 492
ec nomenclature
pdb deposition date 2012-12-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4ikwA00
4D2BA 2CFQA 5EQGA 4ZWCA 4D2CA 4YB9D 4ZYRA 4YBQA 3O7PA 4IU9A 4IKVA 4OH3A 4IKYA 3WDOA 4U4WA 4TPHA 4GC0A 4QIQA 4IKZA 3O7QA 4IKWA 4ZW9A 4U4VA 5A2OA 4IU8A 4GBYA 4PYPA 4XNIA 4IKXA 4J05A 4OAAA 2XUTA 4LEPA 4LDSA 5D58A 5EQHA 2Y5YA 4Q65A 4APSA 4W6VA 1PV7A 5D59A 4TPGA 5D6KA 4ZWBA 2CFPA 4JREA 4UVMA 1PW4A 4JA3A 4JR9A 4GBZA 5GXBA 5EQIA 1PV6A 4XNJA 5C65A 4U4TA 4TPJA 2V8NA 4D2DA 5A2NA
chains in the Genus database with same CATH superfamily
1EVSA 4YB9D 3WDOA 5FUCA 5D70A 5D71A 3OG6A 3FKID 4A3ED 4PYPA 3UF5A 1ITFA 4IKXA 5C44D 2Z3QA 3LB6A 4BY1D 3QB7A 3NCEA 4A3CD 2CYKA 4O6KA 5C65A 5C4XD 1BGEA 1M4RA 2JA6D 4A3FD 4U4WA 1PY2A 1Y6ML 4U4VA 3PIVA 2XUTA 3HHRA 5IP7D 1ITLA 1GNCA 1GA3A 3Q1SI 3I4MD 3EW3A 3SE4B 5LQBA 3I4ND 1Y1WD 3HOVD 3MZGA 1M4CA 4IU9A 4OH3A 3BPNA 4TPHA 5TS9A 1RHGA 1HIKA 4A3KD 1FYHA 3HHCA 3INKC 4GRWA 1AXIA 1PV7A 1BGDA 1HGUA 2B8XA 2B5IA 3B5KA 1IRLA 1RW5A 1WCMD 4ZYRA 1RFBA 4DKEA 4UVMA 3H3VE 4JR9A 4U4TA 2ERJD 3QAZA 5EQGA 3NCFA 1P9MB 1INRA 4GC0A 4QIQA 3H0GD 4IKZA 4IKWA 2H24A 1N1FA 4DOHA 4LDSA 4TPGA 2CFPA 1LK3A 2B91A 3D85C 1CYLA 1PVHB 4ZWCA 1HULA 1HWHA 4D2CA 4GS7A 4MHLA 4NI9A 2LAGA 3TGXB 1CD9A 5D22A 2ILKA 3NCCA 1BGCA 2O26A 2JA8D 4A93D 1EERA 3DGCL 5EQIA 4EXNA 1ETEA 4D2DA 4A3DD 1CSGA 4FA8E 3UF2A 5FLMD 1A7MA 2JA5D 2B63D 3G9VB 2O27A 3PO2D 1M48A 1SCFA 4IU8A 2R93D 3LB6B 1M4AA 3BPOA 5IYBD 1F6FA 2E9WC 2R7ZD 3UX9A 2HYMB 5C3ED 3WCYI 1PW6A 1HZIA 1CN4C 4ZW9A 5A2OA 3DI3A 3PIWA 2Q98A 1M4BA 1Y6NL 3D87A 1YKBA 3OQ3A 3QWRB 4YQXA 5D28B 5FHXA 1D9CA 2Y5YA 4A3GD 1WU3I 5D6KA 4ZWBA 2XQBA 3HOXD 4Z5RD 4XNJA 3HMXB 3SE3B 1Y1VD 1HUWA 2R92D 4ZS7A 4EXPA 3HOZD 4XNIA 1Z7CA 4LEPA 1PGRA 3N06A 4NN6A 1PW4A 4JA3A 5GXBA 1Y14A 4A3LD 2OQPA 4YBQA 4BBSD 1AX8A 1A22A 3HOYD 4NEMA 4LRLA 1KF9A 4NKQC 5EQHA 3D48P 5IYDD 4Q65A 2IL6A 3QB1A 4ZF7A 1QVNA 2C35A 4DKDA 5D59A 1AU1A 1VLKA 4CNIC 4GBZA 3PO3D 1PV6A 4YPGC 3G6DA 4DKFA 1ITIA 1BP3A 1ITMA 2D48A 4NEJA 1I1RB 4GBYA 2L3OA 5D72A 4W6VA 1RCBA 3BESL 4BBRD 3HOWD 2INTA 1Y6KL 4YUEC 1M47A 2B8ZA 3NCBA 4BY7D 3IRHA 2Z3RA 1ILKA 2LMSA 1LQSL 4BXXD 1BCNA 5E4EA 1B5LA 2Q14A 5IP9D 3HOUD 3DI2A 1IL6A 1V7NV 5L6YC 3O7PA 4NN5A 1V7MV 3O7QA 1J7VL 3EJJA 1D9GA 1EMRA 4DKCA 5D58A 2JA7D 3UEZE 5KNHI 2B90A 1EXZA 3N0PA 5A2NA 3L5WI 2B8YA 4IKVA 4NN7A 1JLIA 1IJZA 2PSMA 2GMFA 3L5XA 4A3BD 4A3MD 2VUMD 1CNT1 4YDYI 2D9QA 2B8UA 1HIJA 4O9HA 3S9DA 1IK0A 3DLQI 2CFQA 1EKUA 2O6IA 4I77Z 1ALUA 3QT2C 2KZ1A 2Q7NB 1F45B 1BBNA 5IYCD 4J05A 4RS1A 1M49A 1LKIA 1NBPA 3VA2A 1IARA 4A3ID 2L3YA 4JREA 4WRLB 4NI7A 2V8NA 1HWGA 3OG4A 4D2BA 1Z92A 4IKYA 1BUYA 3AYHA 3NPZA 5C7XA 4PS4A 3BPLA 4OAAA 4J4LC 3DUHC 4APSA 4X51A 1FG9A 4A3JD 4TPJA
chains in the Genus database with same CATH topology
4D2BA 2CFQA 5EQGA 4ZWCA 4D2CA 4YB9D 4ZYRA 4YBQA 3O7PA 4IU9A 4IKVA 4OH3A 4IKYA 3WDOA 4U4WA 4TPHA 4GC0A 4QIQA 4IKZA 3O7QA 4IKWA 4ZW9A 4U4VA 5A2OA 4IU8A 4GBYA 4PYPA 4XNIA 4IKXA 4J05A 4OAAA 2XUTA 4LEPA 4LDSA 5D58A 5EQHA 2Y5YA 4Q65A 4APSA 4W6VA 1PV7A 5D59A 4TPGA 5D6KA 4ZWBA 2CFPA 4JREA 4UVMA 1PW4A 4JA3A 4JR9A 4GBZA 5GXBA 5EQIA 1PV6A 4XNJA 5C65A 4U4TA 4TPJA 2V8NA 4D2DA 5A2NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D2B A;  2CFQ A;  5EQG A;  4ZWC A;  4D2C A;  4YB9 D;  4ZYR A;  4YBQ A;  3O7P A;  4IU9 A;  4IKV A;  4OH3 A;  4IKY A;  3WDO A;  4U4W A;  4TPH A;  4GC0 A;  4QIQ A;  4IKZ A;  3O7Q A;  4IKW A;  4ZW9 A;  4U4V A;  5A2O A;  4IU8 A;  4GBY A;  4PYP A;  4XNI A;  4IKX A;  4J05 A;  4OAA A;  2XUT A;  4LEP A;  4LDS A;  5D58 A;  5EQH A;  2Y5Y A;  4Q65 A;  4APS A;  4W6V A;  1PV7 A;  5D59 A;  4TPG A;  5D6K A;  4ZWB A;  2CFP A;  4JRE A;  4UVM A;  1PW4 A;  4JA3 A;  4JR9 A;  4GBZ A;  5GXB A;  5EQI A;  1PV6 A;  4XNJ A;  5C65 A;  4U4T A;  4TPJ A;  2V8N A;  4D2D A;  5A2N A; 
#chains in the Genus database with same CATH topology
 1EVS A;  4YB9 D;  3WDO A;  5FUC A;  5D70 A;  5D71 A;  3OG6 A;  3FKI D;  4A3E D;  4PYP A;  3UF5 A;  1ITF A;  4IKX A;  5C44 D;  2Z3Q A;  3LB6 A;  4BY1 D;  3QB7 A;  3NCE A;  4A3C D;  2CYK A;  4O6K A;  5C65 A;  5C4X D;  1BGE A;  1M4R A;  2JA6 D;  4A3F D;  4U4W A;  1PY2 A;  1Y6M L;  4U4V A;  3PIV A;  2XUT A;  3HHR A;  5IP7 D;  1ITL A;  1GNC A;  1GA3 A;  3Q1S I;  3I4M D;  3EW3 A;  3SE4 B;  5LQB A;  3I4N D;  1Y1W D;  3HOV D;  3MZG A;  1M4C A;  4IU9 A;  4OH3 A;  3BPN A;  4TPH A;  5TS9 A;  1RHG A;  1HIK A;  4A3K D;  1FYH A;  3HHC A;  3INK C;  4GRW A;  1AXI A;  1PV7 A;  1BGD A;  1HGU A;  2B8X A;  2B5I A;  3B5K A;  1IRL A;  1RW5 A;  1WCM D;  4ZYR A;  1RFB A;  4DKE A;  4UVM A;  3H3V E;  4JR9 A;  4U4T A;  2ERJ D;  3QAZ A;  5EQG A;  3NCF A;  1P9M B;  1INR A;  4GC0 A;  4QIQ A;  3H0G D;  4IKZ A;  4IKW A;  2H24 A;  1N1F A;  4DOH A;  4LDS A;  4TPG A;  2CFP A;  1LK3 A;  2B91 A;  3D85 C;  1CYL A;  1PVH B;  4ZWC A;  1HUL A;  1HWH A;  4D2C A;  4GS7 A;  4MHL A;  4NI9 A;  2LAG A;  3TGX B;  1CD9 A;  5D22 A;  2ILK A;  3NCC A;  1BGC A;  2O26 A;  2JA8 D;  4A93 D;  1EER A;  3DGC L;  5EQI A;  4EXN A;  1ETE A;  4D2D A;  4A3D D;  1CSG A;  4FA8 E;  3UF2 A;  5FLM D;  1A7M A;  2JA5 D;  2B63 D;  3G9V B;  2O27 A;  3PO2 D;  1M48 A;  1SCF A;  4IU8 A;  2R93 D;  3LB6 B;  1M4A A;  3BPO A;  5IYB D;  1F6F A;  2E9W C;  2R7Z D;  3UX9 A;  2HYM B;  5C3E D;  3WCY I;  1PW6 A;  1HZI A;  1CN4 C;  4ZW9 A;  5A2O A;  3DI3 A;  3PIW A;  2Q98 A;  1M4B A;  1Y6N L;  3D87 A;  1YKB A;  3OQ3 A;  3QWR B;  4YQX A;  5D28 B;  5FHX A;  1D9C A;  2Y5Y A;  4A3G D;  1WU3 I;  5D6K A;  4ZWB A;  2XQB A;  3HOX D;  4Z5R D;  4XNJ A;  3HMX B;  3SE3 B;  1Y1V D;  1HUW A;  2R92 D;  4ZS7 A;  4EXP A;  3HOZ D;  4XNI A;  1Z7C A;  4LEP A;  1PGR A;  3N06 A;  4NN6 A;  1PW4 A;  4JA3 A;  5GXB A;  1Y14 A;  4A3L D;  2OQP A;  4YBQ A;  4BBS D;  1AX8 A;  1A22 A;  3HOY D;  4NEM A;  4LRL A;  1KF9 A;  4NKQ C;  5EQH A;  3D48 P;  5IYD D;  4Q65 A;  2IL6 A;  3QB1 A;  4ZF7 A;  1QVN A;  2C35 A;  4DKD A;  5D59 A;  1AU1 A;  1VLK A;  4CNI C;  4GBZ A;  3PO3 D;  1PV6 A;  4YPG C;  3G6D A;  4DKF A;  1ITI A;  1BP3 A;  1ITM A;  2D48 A;  4NEJ A;  1I1R B;  4GBY A;  2L3O A;  5D72 A;  4W6V A;  1RCB A;  3BES L;  4BBR D;  3HOW D;  2INT A;  1Y6K L;  4YUE C;  1M47 A;  2B8Z A;  3NCB A;  4BY7 D;  3IRH A;  2Z3R A;  1ILK A;  2LMS A;  1LQS L;  4BXX D;  1BCN A;  5E4E A;  1B5L A;  2Q14 A;  5IP9 D;  3HOU D;  3DI2 A;  1IL6 A;  1V7N V;  5L6Y C;  3O7P A;  4NN5 A;  1V7M V;  3O7Q A;  1J7V L;  3EJJ A;  1D9G A;  1EMR A;  4DKC A;  5D58 A;  2JA7 D;  3UEZ E;  5KNH I;  2B90 A;  1EXZ A;  3N0P A;  5A2N A;  3L5W I;  2B8Y A;  4IKV A;  4NN7 A;  1JLI A;  1IJZ A;  2PSM A;  2GMF A;  3L5X A;  4A3B D;  4A3M D;  2VUM D;  1CNT 1;  4YDY I;  2D9Q A;  2B8U A;  1HIJ A;  4O9H A;  3S9D A;  1IK0 A;  3DLQ I;  2CFQ A;  1EKU A;  2O6I A;  4I77 Z;  1ALU A;  3QT2 C;  2KZ1 A;  2Q7N B;  1F45 B;  1BBN A;  5IYC D;  4J05 A;  4RS1 A;  1M49 A;  1LKI A;  1NBP A;  3VA2 A;  1IAR A;  4A3I D;  2L3Y A;  4JRE A;  4WRL B;  4NI7 A;  2V8N A;  1HWG A;  3OG4 A;  4D2B A;  1Z92 A;  4IKY A;  1BUY A;  3AYH A;  3NPZ A;  5C7X A;  4PS4 A;  3BPL A;  4OAA A;  4J4L C;  3DUH C;  4APS A;  4X51 A;  1FG9 A;  4A3J D;  4TPJ A; 
#chains in the Genus database with same CATH homology
 4D2B A;  2CFQ A;  5EQG A;  4ZWC A;  4D2C A;  4YB9 D;  4ZYR A;  4YBQ A;  3O7P A;  4IU9 A;  4IKV A;  4OH3 A;  4IKY A;  3WDO A;  4U4W A;  4TPH A;  4GC0 A;  4QIQ A;  4IKZ A;  3O7Q A;  4IKW A;  4ZW9 A;  4U4V A;  5A2O A;  4IU8 A;  4GBY A;  4PYP A;  4XNI A;  4IKX A;  4J05 A;  4OAA A;  2XUT A;  4LEP A;  4LDS A;  5D58 A;  5EQH A;  2Y5Y A;  4Q65 A;  4APS A;  4W6V A;  1PV7 A;  5D59 A;  4TPG A;  5D6K A;  4ZWB A;  2CFP A;  4JRE A;  4UVM A;  1PW4 A;  4JA3 A;  4JR9 A;  4GBZ A;  5GXB A;  5EQI A;  1PV6 A;  4XNJ A;  5C65 A;  4U4T A;  4TPJ A;  2V8N A;  4D2D A;  5A2N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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