4IKZA

Crystal structure of peptide transporter pot (e310q mutant) in complex with alafosfalin
Total Genus 178
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
492
structure length
485
Chain Sequence
SIDKQQIAASVPQRGFFGHPKGLFTLFFTEFWERFSYYGMRAILVYYMYYEVSKGGLGLDEHLALAIMSIYGALVYMSGIIGGWLADRVFGTSRAVFYGGLLIMAGHIALAIPGGVAALFVSMALIVLGTGLLKPNVSSIVGDMYKPGDDRRDAGFSIFYMGINLGAFLAPLVVGTAGMKYNFHLGFGLAAVGMFLGLVVFVATRKKNLGLAGTYVPNPLTPAEKKKAAAIMAVGAVVIAVLLAFTVETFISLVGILGIIIPIIYFVVMYRSPKTTAEERSRVIAYIPLFVASAMFWAIQQQGSTILANYADKRTQLDVAGIHLSPAWFQSLNPLFIIILAPVFAWMWVKLGKRQPTIPQKFALGLLFAGLSFIVILVPGHLSGGGLVHPIWLVLSYFIVVLGELCLSPVGLSATTKLAPAAFSAQTMSLWFLSNAAAQAINAQLVRFYTPENETAYFGTIGGAALVLGLILLAIAPRIGRLMKG
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-12)AH7 (185-211)EMPTYTIV1 (17-20)S1 (17-18)TII1 (148-151)AH5 (118-145)AH2 (23-51)S2 (21-22)AH10 (286-310)3H1 (54-56)3H2 (311-313)AH3 (63-91)AH4 (94-113)TII'1 (211-214)TII2 (213-216)AH6 (153-183)S4 (331-332)AH8 (224-246)TIV2 (218-221)AH16 (435-452)AH15 (419-427)AH9 (256-280)TI1 (281-284)AH14 (399-417)TI3 (432-435)3H5 (455-457)TIV3 (327-330)AH11 (315-323)AH13 (367-391)S3 (327-328)AH12 (341-360)TI2 (361-364)TII'2 (360-363)3H4 (430-432)TI4 (452-455)AH17 (462-491)3H3 (335-340)TIV4 (459-462)Updating...
connected with : NaN
publication title Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT
pubmed doi rcsb
molecule keywords Di-tripeptide ABC transporter (Permease)
molecule tags Transport protein
source organism Geobacillus kaustophilus
total genus 178
structure length 485
sequence length 492
ec nomenclature
pdb deposition date 2012-12-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4ikzA00
4IKYA 4JR9A 5A2OA 4YB9D 4GC0A 3O7PA 5D58A 4IKVA 4U4WA 4ZYRA 4U4VA 4JA3A 4IKWA 4UVMA 4APSA 5EQGA 4LDSA 4U4TA 5EQIA 3WDOA 4OAAA 3O7QA 1PW4A 4TPJA 4PYPA 4XNIA 4GBZA 5GXBA 2CFQA 2CFPA 4XNJA 5A2NA 4YBQA 5D59A 4J05A 4LEPA 1PV7A 4Q65A 5D6KA 5EQHA 4W6VA 4ZWBA 4ZW9A 4IKZA 4D2BA 2XUTA 4JREA 4ZWCA 4IU9A 4OH3A 1PV6A 4TPHA 4D2DA 2V8NA 4D2CA 4TPGA 4IU8A 4QIQA 4GBYA 4IKXA 5C65A 2Y5YA
chains in the Genus database with same CATH superfamily
1M49A 1JLIA 1A7MA 2B8YA 5FHXA 4A93D 1F6FA 2R92D 4ZYRA 1BGDA 4BBSD 2R7ZD 4A3JD 4NN6A 5GXBA 3UEZE 1PV7A 3HOWD 1CD9A 3QAZA 2V8NA 1HZIA 4LRLA 4NI9A 4CNIC 3HOYD 5TS9A 4A3MD 5FLMD 3AYHA 5D59A 4LEPA 3HOXD 4ZW9A 1IK0A 3VA2A 2JA8D 3OG4A 2B91A 2JA7D 3SE3B 4A3ED 1V7MV 4ZF7A 3NCEA 1B5LA 2JA6D 5A2NA 1INRA 4YBQA 4ZWBA 2O26A 4WRLB 2ILKA 5C44D 1I1RB 2B5IA 4GBYA 4J4LC 4DKFA 4NI7A 4EXPA 4DKDA 1Y6KL 2GMFA 4MHLA 5EQIA 1CN4C 2R93D 2L3YA 4DKCA 5IYBD 5D6KA 2OQPA 1ALUA 2D9QA 1EVSA 4BBRD 1V7NV 3IRHA 4IKYA 1WU3I 1PY2A 1Y6ML 1PW6A 4O9HA 3HHCA 3I4ND 5D70A 1LK3A 4Q65A 3HHRA 2H24A 3HOUD 4I77Z 1IL6A 2Z3RA 4IKXA 4YUEC 4YB9D 1HULA 4IKWA 4APSA 2IL6A 1EMRA 1VLKA 3D87A 3PIWA 4J05A 3NCFA 2B8UA 2XUTA 4IU9A 1RCBA 2KZ1A 2B8ZA 4D2CA 2Z3QA 4X51A 1EERA 1HWHA 5C3ED 4BY7D 3PIVA 4YDYI 3PO3D 1EKUA 5EQHA 1HIJA 1HUWA 5L6YC 1F45B 4A3ID 1YKBA 1ETEA 1CSGA 4O6KA 3H3VE 4TPGA 3QWRB 1ITIA 2ERJD 5LQBA 5C4XD 1Y14A 1ITFA 1M48A 1Z7CA 1BGCA 2L3OA 3QT2C 3DUHC 1ITLA 4IKZA 5D72A 1IARA 1AXIA 4ZS7A 4Z5RD 3N06A 3G9VB 3NCBA 4QIQA 2INTA 1M4BA 2LAGA 4JA3A 3DGCL 4JR9A 1BBNA 4A3CD 3NPZA 4XNIA 4XNJA 4A3DD 1LQSL 4NN7A 1N1FA 1Y6NL 5D71A 1HWGA 3BESL 3I4MD 3EW3A 5IP9D 1PGRA 3UF2A 2PSMA 5A2OA 2D48A 3LB6B 3OQ3A 2O27A 1D9GA 4FA8E 3G6DA 4PS4A 3D48P 1RW5A 1ITMA 4D2BA 4TPHA 3LB6A 3QB7A 3FKID 2CYKA 3MZGA 3BPOA 1HGUA 4YQXA 1BCNA 4RS1A 4BY1D 3DI2A 4TPJA 3O7QA 5D22A 3HMXB 2B63D 1Z92A 3DI3A 2JA5D 3PO2D 4JREA 4ZWCA 2B8XA 3NCCA 4A3BD 3Q1SI 1J7VL 1KF9A 1HIKA 4EXNA 4BXXD 4IKVA 4NEMA 4U4VA 3QB1A 5KNHI 4GRWA 5E4EA 3HOVD 4LDSA 4A3LD 2Q7NB 4GBZA 2CFQA 2CFPA 3DLQI 3D85C 1M4AA 4W6VA 1PV6A 1LKIA 4D2DA 5IYDD 1Y1VD 1IRLA 2HYMB 1BP3A 2Y5YA 4GC0A 1BGEA 2XQBA 5D28B 5FUCA 1PVHB 3N0PA 4A3FD 4DKEA 1CNT1 4OH3A 3UX9A 1CYLA 1AU1A 4YPGC 3INKC 3BPLA 4U4TA 4OAAA 1PW4A 4PYPA 1AX8A 1RFBA 5IP7D 1D9CA 1GA3A 4NKQC 3SE4B 3EJJA 3OG6A 5C7XA 4U4WA 1FG9A 3UF5A 4UVMA 1Y1WD 4DOHA 3HOZD 5EQGA 4A3KD 2Q14A 2C35A 1SCFA 2Q98A 2B90A 1EXZA 4NN5A 3B5KA 3L5WI 4IU8A 1IJZA 1GNCA 2LMSA 3O7PA 1FYHA 3BPNA 5D58A 1BUYA 1RHGA 3WCYI 3H0GD 3S9DA 1P9MB 1NBPA 1M4RA 3WDOA 5IYCD 2O6IA 4A3GD 1ILKA 1WCMD 1M47A 3L5XA 2E9WC 4NEJA 3TGXB 1QVNA 1A22A 1M4CA 2VUMD 5C65A 4GS7A
chains in the Genus database with same CATH topology
4IKYA 4JR9A 5A2OA 4YB9D 4GC0A 3O7PA 5D58A 4IKVA 4U4WA 4ZYRA 4U4VA 4JA3A 4IKWA 4UVMA 4APSA 5EQGA 4LDSA 4U4TA 5EQIA 3WDOA 4OAAA 3O7QA 1PW4A 4TPJA 4PYPA 4XNIA 4GBZA 5GXBA 2CFQA 2CFPA 4XNJA 5A2NA 4YBQA 5D59A 4J05A 4LEPA 1PV7A 4Q65A 5D6KA 5EQHA 4W6VA 4ZWBA 4ZW9A 4IKZA 4D2BA 2XUTA 4JREA 4ZWCA 4IU9A 4OH3A 1PV6A 4TPHA 4D2DA 2V8NA 4D2CA 4TPGA 4IU8A 4QIQA 4GBYA 4IKXA 5C65A 2Y5YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IKY A;  4JR9 A;  5A2O A;  4YB9 D;  4GC0 A;  3O7P A;  5D58 A;  4IKV A;  4U4W A;  4ZYR A;  4U4V A;  4JA3 A;  4IKW A;  4UVM A;  4APS A;  5EQG A;  4LDS A;  4U4T A;  5EQI A;  3WDO A;  4OAA A;  3O7Q A;  1PW4 A;  4TPJ A;  4PYP A;  4XNI A;  4GBZ A;  5GXB A;  2CFQ A;  2CFP A;  4XNJ A;  5A2N A;  4YBQ A;  5D59 A;  4J05 A;  4LEP A;  1PV7 A;  4Q65 A;  5D6K A;  5EQH A;  4W6V A;  4ZWB A;  4ZW9 A;  4IKZ A;  4D2B A;  2XUT A;  4JRE A;  4ZWC A;  4IU9 A;  4OH3 A;  1PV6 A;  4TPH A;  4D2D A;  2V8N A;  4D2C A;  4TPG A;  4IU8 A;  4QIQ A;  4GBY A;  4IKX A;  5C65 A;  2Y5Y A; 
#chains in the Genus database with same CATH topology
 1M49 A;  1JLI A;  1A7M A;  2B8Y A;  5FHX A;  4A93 D;  1F6F A;  2R92 D;  4ZYR A;  1BGD A;  4BBS D;  2R7Z D;  4A3J D;  4NN6 A;  5GXB A;  3UEZ E;  1PV7 A;  3HOW D;  1CD9 A;  3QAZ A;  2V8N A;  1HZI A;  4LRL A;  4NI9 A;  4CNI C;  3HOY D;  5TS9 A;  4A3M D;  5FLM D;  3AYH A;  5D59 A;  4LEP A;  3HOX D;  4ZW9 A;  1IK0 A;  3VA2 A;  2JA8 D;  3OG4 A;  2B91 A;  2JA7 D;  3SE3 B;  4A3E D;  1V7M V;  4ZF7 A;  3NCE A;  1B5L A;  2JA6 D;  5A2N A;  1INR A;  4YBQ A;  4ZWB A;  2O26 A;  4WRL B;  2ILK A;  5C44 D;  1I1R B;  2B5I A;  4GBY A;  4J4L C;  4DKF A;  4NI7 A;  4EXP A;  4DKD A;  1Y6K L;  2GMF A;  4MHL A;  5EQI A;  1CN4 C;  2R93 D;  2L3Y A;  4DKC A;  5IYB D;  5D6K A;  2OQP A;  1ALU A;  2D9Q A;  1EVS A;  4BBR D;  1V7N V;  3IRH A;  4IKY A;  1WU3 I;  1PY2 A;  1Y6M L;  1PW6 A;  4O9H A;  3HHC A;  3I4N D;  5D70 A;  1LK3 A;  4Q65 A;  3HHR A;  2H24 A;  3HOU D;  4I77 Z;  1IL6 A;  2Z3R A;  4IKX A;  4YUE C;  4YB9 D;  1HUL A;  4IKW A;  4APS A;  2IL6 A;  1EMR A;  1VLK A;  3D87 A;  3PIW A;  4J05 A;  3NCF A;  2B8U A;  2XUT A;  4IU9 A;  1RCB A;  2KZ1 A;  2B8Z A;  4D2C A;  2Z3Q A;  4X51 A;  1EER A;  1HWH A;  5C3E D;  4BY7 D;  3PIV A;  4YDY I;  3PO3 D;  1EKU A;  5EQH A;  1HIJ A;  1HUW A;  5L6Y C;  1F45 B;  4A3I D;  1YKB A;  1ETE A;  1CSG A;  4O6K A;  3H3V E;  4TPG A;  3QWR B;  1ITI A;  2ERJ D;  5LQB A;  5C4X D;  1Y14 A;  1ITF A;  1M48 A;  1Z7C A;  1BGC A;  2L3O A;  3QT2 C;  3DUH C;  1ITL A;  4IKZ A;  5D72 A;  1IAR A;  1AXI A;  4ZS7 A;  4Z5R D;  3N06 A;  3G9V B;  3NCB A;  4QIQ A;  2INT A;  1M4B A;  2LAG A;  4JA3 A;  3DGC L;  4JR9 A;  1BBN A;  4A3C D;  3NPZ A;  4XNI A;  4XNJ A;  4A3D D;  1LQS L;  4NN7 A;  1N1F A;  1Y6N L;  5D71 A;  1HWG A;  3BES L;  3I4M D;  3EW3 A;  5IP9 D;  1PGR A;  3UF2 A;  2PSM A;  5A2O A;  2D48 A;  3LB6 B;  3OQ3 A;  2O27 A;  1D9G A;  4FA8 E;  3G6D A;  4PS4 A;  3D48 P;  1RW5 A;  1ITM A;  4D2B A;  4TPH A;  3LB6 A;  3QB7 A;  3FKI D;  2CYK A;  3MZG A;  3BPO A;  1HGU A;  4YQX A;  1BCN A;  4RS1 A;  4BY1 D;  3DI2 A;  4TPJ A;  3O7Q A;  5D22 A;  3HMX B;  2B63 D;  1Z92 A;  3DI3 A;  2JA5 D;  3PO2 D;  4JRE A;  4ZWC A;  2B8X A;  3NCC A;  4A3B D;  3Q1S I;  1J7V L;  1KF9 A;  1HIK A;  4EXN A;  4BXX D;  4IKV A;  4NEM A;  4U4V A;  3QB1 A;  5KNH I;  4GRW A;  5E4E A;  3HOV D;  4LDS A;  4A3L D;  2Q7N B;  4GBZ A;  2CFQ A;  2CFP A;  3DLQ I;  3D85 C;  1M4A A;  4W6V A;  1PV6 A;  1LKI A;  4D2D A;  5IYD D;  1Y1V D;  1IRL A;  2HYM B;  1BP3 A;  2Y5Y A;  4GC0 A;  1BGE A;  2XQB A;  5D28 B;  5FUC A;  1PVH B;  3N0P A;  4A3F D;  4DKE A;  1CNT 1;  4OH3 A;  3UX9 A;  1CYL A;  1AU1 A;  4YPG C;  3INK C;  3BPL A;  4U4T A;  4OAA A;  1PW4 A;  4PYP A;  1AX8 A;  1RFB A;  5IP7 D;  1D9C A;  1GA3 A;  4NKQ C;  3SE4 B;  3EJJ A;  3OG6 A;  5C7X A;  4U4W A;  1FG9 A;  3UF5 A;  4UVM A;  1Y1W D;  4DOH A;  3HOZ D;  5EQG A;  4A3K D;  2Q14 A;  2C35 A;  1SCF A;  2Q98 A;  2B90 A;  1EXZ A;  4NN5 A;  3B5K A;  3L5W I;  4IU8 A;  1IJZ A;  1GNC A;  2LMS A;  3O7P A;  1FYH A;  3BPN A;  5D58 A;  1BUY A;  1RHG A;  3WCY I;  3H0G D;  3S9D A;  1P9M B;  1NBP A;  1M4R A;  3WDO A;  5IYC D;  2O6I A;  4A3G D;  1ILK A;  1WCM D;  1M47 A;  3L5X A;  2E9W C;  4NEJ A;  3TGX B;  1QVN A;  1A22 A;  1M4C A;  2VUM D;  5C65 A;  4GS7 A; 
#chains in the Genus database with same CATH homology
 4IKY A;  4JR9 A;  5A2O A;  4YB9 D;  4GC0 A;  3O7P A;  5D58 A;  4IKV A;  4U4W A;  4ZYR A;  4U4V A;  4JA3 A;  4IKW A;  4UVM A;  4APS A;  5EQG A;  4LDS A;  4U4T A;  5EQI A;  3WDO A;  4OAA A;  3O7Q A;  1PW4 A;  4TPJ A;  4PYP A;  4XNI A;  4GBZ A;  5GXB A;  2CFQ A;  2CFP A;  4XNJ A;  5A2N A;  4YBQ A;  5D59 A;  4J05 A;  4LEP A;  1PV7 A;  4Q65 A;  5D6K A;  5EQH A;  4W6V A;  4ZWB A;  4ZW9 A;  4IKZ A;  4D2B A;  2XUT A;  4JRE A;  4ZWC A;  4IU9 A;  4OH3 A;  1PV6 A;  4TPH A;  4D2D A;  2V8N A;  4D2C A;  4TPG A;  4IU8 A;  4QIQ A;  4GBY A;  4IKX A;  5C65 A;  2Y5Y A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.