4LEPA

Structural insights into substrate recognition in proton dependent oligopeptide transporters
Total Genus 173
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
484
structure length
455
Chain Sequence
SKTHSFMTVSLIELWERFGYYGMQALIVYFMVQRLGFDDSRANLVWSACAALIYVSPAIGGWVGDKILGTKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVGNGLFKPNAGNLVRKIYEGDDSKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVGILVGLGNYALMHKSLANYGVNKKSLAIVLALAALSVVASAIILEYEDVARVFVYAAGVAVLGIFFHLIRPSERAGLIAALILTVQTVFFFIFYQQMSTSLALFALRNVDWDFWTWSPAQFQALNPIWIMVLSPVLAWSYSWDFSIAAKFALGFAVVAIGFFIYGFAGQFAVNGKTSSWVMIWGYASYSLGELLVSGLGLAMIARYGFMMGAYFVASGISQYLGGVVANFASVPQDLVDPLQTLPVYTNLFNKLGVAAVVCTIIALAVLPLMRRLT
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH6 (178-193)EMPTYAH1 (9-42)AH4 (103-130)TIV6 (174-177)AH5 (137-171)AH10 (297-304)TIV14 (414-423)AH14 (410-413)TIV13 (405-408)AH7 (217-239)AH13 (388-405)AH2 (47-75)3H1 (196-198)AH3 (78-95)TIV2 (130-133)TIV3 (131-134)AH12 (357-376)TIV9 (294-297)AH9 (270-294)3H2 (322-328)AH11 (329-341)TI2 (376-379)TIV11 (382-385)3H3 (445-447)TI3 (450-453)TI1 (95-98)TIV4 (133-136)TIV5 (172-175)AH15 (424-444)TIV1 (100-103)AH8 (241-264)TIV8 (204-207)Updating...
connected with : NaN
publication title Structural insights into substrate recognition in proton-dependent oligopeptide transporters.
pubmed doi rcsb
molecule keywords Proton:oligopeptide symporter POT family
molecule tags Membrane protein, tranport protein
source organism Shewanella oneidensis
total genus 173
structure length 455
sequence length 484
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4lepA00
3WDOA 4JR9A 4LEPA 3O7PA 4OH3A 4GBYA 4PYPA 4U4TA 4D2CA 5D6KA 4GBZA 5EQIA 2XUTA 5GXBA 4IKYA 2CFQA 1PV6A 5EQGA 4ZWCA 4ZW9A 5C65A 5A2OA 2Y5YA 2CFPA 4IKWA 2V8NA 4ZYRA 3O7QA 4U4WA 4W6VA 4XNJA 4IU9A 5EQHA 4OAAA 4XNIA 4U4VA 4D2DA 4YB9D 4IKVA 4JA3A 4YBQA 4J05A 4IKZA 1PV7A 4APSA 4TPGA 4Q65A 4ZWBA 4TPHA 5D59A 5A2NA 4IKXA 4JREA 4D2BA 4GC0A 4TPJA 4IU8A 4LDSA 4UVMA 4QIQA 5D58A 1PW4A
chains in the Genus database with same CATH superfamily
3H0GD 4RS1A 4LEPA 3O7PA 3UEZE 4GBZA 1I1RB 3S9DA 4DKFA 4J4LC 1GNCA 3O7QA 4W6VA 4BY7D 5KNHI 5LQBA 1M49A 5A2NA 4NEJA 3PO3D 1IJZA 3WDOA 3HOYD 4A3ID 1JLIA 4A3JD 2CFQA 4IKYA 5EQGA 2CFPA 4IU9A 1M4CA 1N1FA 1HGUA 1QVNA 1A7MA 5D71A 1D9GA 1RFBA 3HOUD 2PSMA 2R92D 3EW3A 4YQXA 4GC0A 5IYDD 1EERA 4OH3A 3HOZD 4A3GD 5C4XD 1AXIA 3LB6B 4YDYI 5IYBD 4I77Z 2H24A 2B8ZA 4DKEA 1HUWA 4JA3A 4NN7A 1M47A 4D2BA 2Z3RA 5TS9A 3H3VE 3QT2C 4NN6A 3I4ND 4GBYA 3NCFA 1LKIA 3PO2D 3HOXD 1M4AA 5IP7D 1CYLA 1IARA 4FA8E 4ZF7A 2B8XA 2B8YA 2O26A 3PIWA 2O6IA 3OQ3A 4D2DA 4IKVA 3L5WI 4YBQA 1RW5A 3G6DA 1LQSL 2GMFA 5IP9D 2INTA 1PW4A 3WCYI 4EXNA 1GA3A 1ILKA 1M48A 5C7XA 3TGXB 4GS7A 4ZW9A 3B5KA 2Q7NB 4XNIA 2ERJD 3INKC 4IKZA 1PW6A 3I4MD 4LDSA 2E9WC 3N0PA 5FUCA 2C35A 1HWGA 1IK0A 3OG6A 2XUTA 2L3YA 1BUYA 2Y5YA 1ALUA 1BGDA 3QB1A 4OAAA 3FKID 4YB9D 1B5LA 1Y6KL 4J05A 1HZIA 4TPGA 4DKCA 4WRLB 5D58A 2CYKA 1BGCA 2OQPA 3DI2A 5L6YC 1CNT1 5FLMD 3L5XA 2Q98A 2V8NA 4O6KA 1ETEA 1A22A 3DI3A 4IU8A 5C3ED 4A3FD 1FYHA 5D72A 1Y1VD 1BCNA 1HIKA 3D87A 4BBRD 2JA8D 2LAGA 1HWHA 1BP3A 1PV7A 4PS4A 4X51A 4Z5RD 3EJJA 5IYCD 3NCCA 3DUHC 4BY1D 4QIQA 1J7VL 3BESL 5EQIA 1WCMD 2IL6A 1Z7CA 3QB7A 3BPOA 3SE4B 4U4WA 2Q14A 4LRLA 3SE3B 1INRA 1ITLA 4Q65A 2ILKA 2B63D 1IL6A 3BPNA 1LK3A 4U4TA 4D2CA 2B90A 1NBPA 4A3MD 3LB6A 3VA2A 4A3CD 3UF2A 5EQHA 3IRHA 2B91A 2L3OA 1Y1WD 3HOVD 1PY2A 3MZGA 4DKDA 3HMXB 3PIVA 4JR9A 2HYMB 5D6KA 4ZS7A 2Z3QA 1KF9A 2VUMD 5C65A 4IKWA 3UX9A 1CD9A 3BPLA 3HHRA 1YKBA 3QWRB 3DLQI 3OG4A 1BGEA 2JA7D 1WU3I 2B5IA 1F45B 1M4BA 1PGRA 2XQBA 1P9MB 1Z92A 3UF5A 4ZYRA 2O27A 1PVHB 4CNIC 3NCBA 4JREA 4YPGC 1ITMA 5D70A 3Q1SI 3QAZA 4EXPA 1BBNA 1HULA 4GRWA 4BBSD 4NKQC 1Y14A 4MHLA 3AYHA 1Y6ML 2R93D 4TPJA 1AU1A 4A3KD 2LMSA 4UVMA 4A93D 3HHCA 5GXBA 1VLKA 1ITIA 1RHGA 1V7NV 1EMRA 1EVSA 4U4VA 5D22A 3D85C 1FG9A 2KZ1A 2JA5D 4TPHA 4IKXA 1ITFA 4O9HA 4NEMA 3D48P 5E4EA 1CSGA 4PYPA 1CN4C 2D9QA 1AX8A 4NN5A 4A3LD 1RCBA 4ZWCA 5A2OA 3N06A 5C44D 4A3BD 4A3ED 1HIJA 4APSA 5D59A 3DGCL 2D48A 4BXXD 1IRLA 3G9VB 3NCEA 1PV6A 5D28B 1SCFA 5FHXA 1F6FA 2JA6D 2R7ZD 4A3DD 3NPZA 2B8UA 4XNJA 1EXZA 3HOWD 4NI7A 1Y6NL 4DOHA 4ZWBA 4YUEC 1V7MV 1M4RA 1D9CA 1EKUA 4NI9A
chains in the Genus database with same CATH topology
3WDOA 4JR9A 4LEPA 3O7PA 4OH3A 4GBYA 4PYPA 4U4TA 4D2CA 5D6KA 4GBZA 5EQIA 2XUTA 5GXBA 4IKYA 2CFQA 1PV6A 5EQGA 4ZWCA 4ZW9A 5C65A 5A2OA 2Y5YA 2CFPA 4IKWA 2V8NA 4ZYRA 3O7QA 4U4WA 4W6VA 4XNJA 4IU9A 5EQHA 4OAAA 4XNIA 4U4VA 4D2DA 4YB9D 4IKVA 4JA3A 4YBQA 4J05A 4IKZA 1PV7A 4APSA 4TPGA 4Q65A 4ZWBA 4TPHA 5D59A 5A2NA 4IKXA 4JREA 4D2BA 4GC0A 4TPJA 4IU8A 4LDSA 4UVMA 4QIQA 5D58A 1PW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WDO A;  4JR9 A;  4LEP A;  3O7P A;  4OH3 A;  4GBY A;  4PYP A;  4U4T A;  4D2C A;  5D6K A;  4GBZ A;  5EQI A;  2XUT A;  5GXB A;  4IKY A;  2CFQ A;  1PV6 A;  5EQG A;  4ZWC A;  4ZW9 A;  5C65 A;  5A2O A;  2Y5Y A;  2CFP A;  4IKW A;  2V8N A;  4ZYR A;  3O7Q A;  4U4W A;  4W6V A;  4XNJ A;  4IU9 A;  5EQH A;  4OAA A;  4XNI A;  4U4V A;  4D2D A;  4YB9 D;  4IKV A;  4JA3 A;  4YBQ A;  4J05 A;  4IKZ A;  1PV7 A;  4APS A;  4TPG A;  4Q65 A;  4ZWB A;  4TPH A;  5D59 A;  5A2N A;  4IKX A;  4JRE A;  4D2B A;  4GC0 A;  4TPJ A;  4IU8 A;  4LDS A;  4UVM A;  4QIQ A;  5D58 A;  1PW4 A; 
#chains in the Genus database with same CATH topology
 3H0G D;  4RS1 A;  4LEP A;  3O7P A;  3UEZ E;  4GBZ A;  1I1R B;  3S9D A;  4DKF A;  4J4L C;  1GNC A;  3O7Q A;  4W6V A;  4BY7 D;  5KNH I;  5LQB A;  1M49 A;  5A2N A;  4NEJ A;  3PO3 D;  1IJZ A;  3WDO A;  3HOY D;  4A3I D;  1JLI A;  4A3J D;  2CFQ A;  4IKY A;  5EQG A;  2CFP A;  4IU9 A;  1M4C A;  1N1F A;  1HGU A;  1QVN A;  1A7M A;  5D71 A;  1D9G A;  1RFB A;  3HOU D;  2PSM A;  2R92 D;  3EW3 A;  4YQX A;  4GC0 A;  5IYD D;  1EER A;  4OH3 A;  3HOZ D;  4A3G D;  5C4X D;  1AXI A;  3LB6 B;  4YDY I;  5IYB D;  4I77 Z;  2H24 A;  2B8Z A;  4DKE A;  1HUW A;  4JA3 A;  4NN7 A;  1M47 A;  4D2B A;  2Z3R A;  5TS9 A;  3H3V E;  3QT2 C;  4NN6 A;  3I4N D;  4GBY A;  3NCF A;  1LKI A;  3PO2 D;  3HOX D;  1M4A A;  5IP7 D;  1CYL A;  1IAR A;  4FA8 E;  4ZF7 A;  2B8X A;  2B8Y A;  2O26 A;  3PIW A;  2O6I A;  3OQ3 A;  4D2D A;  4IKV A;  3L5W I;  4YBQ A;  1RW5 A;  3G6D A;  1LQS L;  2GMF A;  5IP9 D;  2INT A;  1PW4 A;  3WCY I;  4EXN A;  1GA3 A;  1ILK A;  1M48 A;  5C7X A;  3TGX B;  4GS7 A;  4ZW9 A;  3B5K A;  2Q7N B;  4XNI A;  2ERJ D;  3INK C;  4IKZ A;  1PW6 A;  3I4M D;  4LDS A;  2E9W C;  3N0P A;  5FUC A;  2C35 A;  1HWG A;  1IK0 A;  3OG6 A;  2XUT A;  2L3Y A;  1BUY A;  2Y5Y A;  1ALU A;  1BGD A;  3QB1 A;  4OAA A;  3FKI D;  4YB9 D;  1B5L A;  1Y6K L;  4J05 A;  1HZI A;  4TPG A;  4DKC A;  4WRL B;  5D58 A;  2CYK A;  1BGC A;  2OQP A;  3DI2 A;  5L6Y C;  1CNT 1;  5FLM D;  3L5X A;  2Q98 A;  2V8N A;  4O6K A;  1ETE A;  1A22 A;  3DI3 A;  4IU8 A;  5C3E D;  4A3F D;  1FYH A;  5D72 A;  1Y1V D;  1BCN A;  1HIK A;  3D87 A;  4BBR D;  2JA8 D;  2LAG A;  1HWH A;  1BP3 A;  1PV7 A;  4PS4 A;  4X51 A;  4Z5R D;  3EJJ A;  5IYC D;  3NCC A;  3DUH C;  4BY1 D;  4QIQ A;  1J7V L;  3BES L;  5EQI A;  1WCM D;  2IL6 A;  1Z7C A;  3QB7 A;  3BPO A;  3SE4 B;  4U4W A;  2Q14 A;  4LRL A;  3SE3 B;  1INR A;  1ITL A;  4Q65 A;  2ILK A;  2B63 D;  1IL6 A;  3BPN A;  1LK3 A;  4U4T A;  4D2C A;  2B90 A;  1NBP A;  4A3M D;  3LB6 A;  3VA2 A;  4A3C D;  3UF2 A;  5EQH A;  3IRH A;  2B91 A;  2L3O A;  1Y1W D;  3HOV D;  1PY2 A;  3MZG A;  4DKD A;  3HMX B;  3PIV A;  4JR9 A;  2HYM B;  5D6K A;  4ZS7 A;  2Z3Q A;  1KF9 A;  2VUM D;  5C65 A;  4IKW A;  3UX9 A;  1CD9 A;  3BPL A;  3HHR A;  1YKB A;  3QWR B;  3DLQ I;  3OG4 A;  1BGE A;  2JA7 D;  1WU3 I;  2B5I A;  1F45 B;  1M4B A;  1PGR A;  2XQB A;  1P9M B;  1Z92 A;  3UF5 A;  4ZYR A;  2O27 A;  1PVH B;  4CNI C;  3NCB A;  4JRE A;  4YPG C;  1ITM A;  5D70 A;  3Q1S I;  3QAZ A;  4EXP A;  1BBN A;  1HUL A;  4GRW A;  4BBS D;  4NKQ C;  1Y14 A;  4MHL A;  3AYH A;  1Y6M L;  2R93 D;  4TPJ A;  1AU1 A;  4A3K D;  2LMS A;  4UVM A;  4A93 D;  3HHC A;  5GXB A;  1VLK A;  1ITI A;  1RHG A;  1V7N V;  1EMR A;  1EVS A;  4U4V A;  5D22 A;  3D85 C;  1FG9 A;  2KZ1 A;  2JA5 D;  4TPH A;  4IKX A;  1ITF A;  4O9H A;  4NEM A;  3D48 P;  5E4E A;  1CSG A;  4PYP A;  1CN4 C;  2D9Q A;  1AX8 A;  4NN5 A;  4A3L D;  1RCB A;  4ZWC A;  5A2O A;  3N06 A;  5C44 D;  4A3B D;  4A3E D;  1HIJ A;  4APS A;  5D59 A;  3DGC L;  2D48 A;  4BXX D;  1IRL A;  3G9V B;  3NCE A;  1PV6 A;  5D28 B;  1SCF A;  5FHX A;  1F6F A;  2JA6 D;  2R7Z D;  4A3D D;  3NPZ A;  2B8U A;  4XNJ A;  1EXZ A;  3HOW D;  4NI7 A;  1Y6N L;  4DOH A;  4ZWB A;  4YUE C;  1V7M V;  1M4R A;  1D9C A;  1EKU A;  4NI9 A; 
#chains in the Genus database with same CATH homology
 3WDO A;  4JR9 A;  4LEP A;  3O7P A;  4OH3 A;  4GBY A;  4PYP A;  4U4T A;  4D2C A;  5D6K A;  4GBZ A;  5EQI A;  2XUT A;  5GXB A;  4IKY A;  2CFQ A;  1PV6 A;  5EQG A;  4ZWC A;  4ZW9 A;  5C65 A;  5A2O A;  2Y5Y A;  2CFP A;  4IKW A;  2V8N A;  4ZYR A;  3O7Q A;  4U4W A;  4W6V A;  4XNJ A;  4IU9 A;  5EQH A;  4OAA A;  4XNI A;  4U4V A;  4D2D A;  4YB9 D;  4IKV A;  4JA3 A;  4YBQ A;  4J05 A;  4IKZ A;  1PV7 A;  4APS A;  4TPG A;  4Q65 A;  4ZWB A;  4TPH A;  5D59 A;  5A2N A;  4IKX A;  4JRE A;  4D2B A;  4GC0 A;  4TPJ A;  4IU8 A;  4LDS A;  4UVM A;  4QIQ A;  5D58 A;  1PW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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