4TPG | Genus

Total Genus 174

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	174
sequence length	485
structure length	459
Chain Sequence	VSKTHSFMTVSLIELWERFGYYGMQALIVYFMVQRLGFDDSRANLVWSACAALIYVSPAIGGWVGDKILGTKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVGNGLFKPNAGNLVRKIYESKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVGILVGLGNYALMHKSLANYGSEPDTRPVNKKSLAIVLALAALSVVASAIILEYEDVARVFVYAAGVAVLGIFFHLIRPSERAGLIAALILTVQTVFFFIFYQQMSTSLALFALRNVDWDFQVFGTHLWTWSPAQFQALNPIWIMVLSPVLAWIAAKFALGFAVVAIGFFIYGFAGQFAVNGKTSSWVMIWGYASYSLGELLVSGLGLAMIARYFMMGAYFVASGISQYLGGVVANFASVPQDLVDPLQTLPVYTNLFNKLGVAAVVCTIIALAVLPLMRRLT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Shewanella oneidensis mr-1
publication title	Selectivity mechanism of a bacterial homolog of the human drug-peptide transporters PepT1 and PepT2. pubmed doi rcsb
molecule keywords	Proton:oligopeptide symporter POT family
total genus	174
structure length	459
sequence length	485
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-06-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00854	PTR2	POT family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1250.20	Mainly Alpha	Up-down Bundle	Growth Hormone; Chain: A;	MFS general substrate transporter like domains	4tpgA00

3O7PA 5EQGA 4ZWCA 4LEPA 4OAAA 1PV7A 4U4VA 4IKVA 5D6KA 4U4TA 5EQIA 4TPGA 5A2NA 4TPHA 4Q65A 5A2OA 5C65A 4YBQA 4PYPA 4IU9A 4QIQA 4U4WA 4ZWBA 4ZYRA 2CFPA 4UVMA 5GXBA 4JA3A 4GC0A 4APSA 4ZW9A 4IKZA 4J05A 4D2CA 1PV6A 4OH3A 4TPJA 3O7QA 4D2DA 4LDSA 4IKWA 4JREA 4W6VA 2V8NA 4IU8A 4IKYA 4D2BA 5D59A 5D58A 4JR9A 3WDOA 4YB9D 1PW4A 4XNIA 5EQHA 4IKXA 4XNJA 4GBZA 2XUTA 2CFQA 4GBYA 2Y5YA
chains in the Genus database with same CATH superfamily

3O7PA 1EERA 3BPOA 4LRLA 2HYMB 4A3LD 4UVMA 1Y1WD 1HULA 3FKID 3L5XA 3MZGA 2JA5D 5D59A 4J4LC 4YB9D 1Y6KL 3HOXD 2JA7D 3DUHC 1Y14A 1HIKA 5LQBA 1EVSA 3HOWD 1F6FA 5C7XA 4QIQA 4IKZA 1CYLA 2B63D 2B90A 1M47A 3B5KA 4JR9A 1PW4A 3EJJA 3HOVD 4DOHA 1PGRA 4EXNA 1A22A 3H3VE 1M4RA 1LQSL 4BBSD 4DKDA 5FLMD 1AX8A 1Y1VD 4NI7A 4A3KD 3D85C 4NN5A 1BP3A 3IRHA 4D2DA 4IKWA 1P9MB 2R93D 1A7MA 1M49A 3NPZA 4BBRD 5EQIA 1V7NV 4U4TA 1F45B 4TPGA 4Q65A 3HOZD 3HOYD 1HGUA 1M48A 1ITFA 1IK0A 1INRA 1ALUA 4IU8A 1IARA 2B8ZA 5C3ED 1N1FA 1VLKA 1AU1A 1CNT1 4A3CD 4A93D 2JA6D 3D48P 1M4BA 5C65A 3PO3D 3N06A 3NCEA 4PYPA 3I4MD 4JREA 2IL6A 3QWRB 2XQBA 1GNCA 4WRLB 1RFBA 5D71A 1AXIA 1ILKA 2D48A 1FYHA 1HWHA 4FA8E 3LB6A 4APSA 1PW6A 1D9CA 3PO2D 3N0PA 2L3OA 3QT2C 5D28B 2Y5YA 4LEPA 1FG9A 4A3FD 5FHXA 1SCFA 5GXBA 3DI3A 2OQPA 4YQXA 3SE4B 4A3DD 4TPJA 5C4XD 4LDSA 1M4AA 4O9HA 4BY1D 2KZ1A 1CN4C 3S9DA 3DLQI 2Z3RA 2C35A 4OAAA 4GS7A 1YKBA 1HIJA 3NCCA 5TS9A 1Y6NL 1I1RB 4YPGC 5IYCD 4GRWA 3PIWA 1NBPA 2B91A 3BESL 4A3MD 3BPNA 4RS1A 1EXZA 3QAZA 2Z3QA 2R7ZD 3UEZE 1CD9A 3QB1A 4ZYRA 3L5WI 2CFPA 4A3BD 1HZIA 3UX9A 4DKFA 5IYDD 3SE3B 3D87A 3G9VB 1J7VL 5FUCA 3NCBA 3G6DA 3PIVA 3OQ3A 4X51A 1Z7CA 3LB6B 4ZWCA 3DI2A 3AYHA 2LAGA 4U4WA 2B8UA 1WCMD 2GMFA 1ITIA 4EXPA 1BGCA 4Z5RD 1LK3A 2E9WC 1JLIA 3OG4A 1D9GA 5D6KA 5A2OA 3HHCA 3NCFA 4YDYI 4NEMA 4ZWBA 4A3GD 2B5IA 5D22A 3I4ND 5E4EA 1IJZA 4NKQC 1RW5A 1GA3A 4XNJA 4GBYA 1IRLA 2R92D 1BBNA 1WU3I 1HUWA 1RCBA 4BXXD 1Z92A 4TPHA 2CFQA 1KF9A 3WCYI 4JA3A 4GC0A 1PV6A 2O6IA 2V8NA 4YUEC 2Q14A 4D2BA 3H0GD 3HOUD 4XNIA 4NN7A 4I77Z 4GBZA 1ITLA 2CYKA 5C44D 3UF5A 4DKCA 1PV7A 4IKVA 2B8XA 1V7MV 2ILKA 3INKC 3EW3A 1CSGA 4D2CA 4NN6A 3HHRA 4PS4A 4A3JD 1M4CA 1QVNA 2INTA 2D9QA 5EQGA 2Q98A 1HWGA 4U4VA 5D70A 2H24A 1ETEA 4NEJA 4CNIC 4IU9A 2B8YA 4J05A 5IYBD 3HMXB 1BUYA 1RHGA 3WDOA 1IL6A 2O26A 1BGDA 3QB7A 3UF2A 2VUMD 1PVHB 1LKIA 3Q1SI 2Q7NB 4O6KA 5D72A 4ZF7A 5L6YC 3DGCL 2L3YA 4A3ED 4NI9A 1B5LA 1BCNA 5KNHI 4W6VA 3BPLA 1EKUA 5IP7D 4BY7D 2JA8D 2LMSA 4IKXA 2ERJD 2XUTA 1PY2A 3TGXB 5IP9D 3VA2A 5A2NA 2O27A 1EMRA 4YBQA 4DKEA 4ZS7A 4ZW9A 4OH3A 3O7QA 2PSMA 4MHLA 4IKYA 1BGEA 1ITMA 5D58A 4A3ID 1Y6ML 5EQHA 3OG6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3O7P A;  5EQG A;  4ZWC A;  4LEP A;  4OAA A;  1PV7 A;  4U4V A;  4IKV A;  5D6K A;  4U4T A;  5EQI A;  4TPG A;  5A2N A;  4TPH A;  4Q65 A;  5A2O A;  5C65 A;  4YBQ A;  4PYP A;  4IU9 A;  4QIQ A;  4U4W A;  4ZWB A;  4ZYR A;  2CFP A;  4UVM A;  5GXB A;  4JA3 A;  4GC0 A;  4APS A;  4ZW9 A;  4IKZ A;  4J05 A;  4D2C A;  1PV6 A;  4OH3 A;  4TPJ A;  3O7Q A;  4D2D A;  4LDS A;  4IKW A;  4JRE A;  4W6V A;  2V8N A;  4IU8 A;  4IKY A;  4D2B A;  5D59 A;  5D58 A;  4JR9 A;  3WDO A;  4YB9 D;  1PW4 A;  4XNI A;  5EQH A;  4IKX A;  4XNJ A;  4GBZ A;  2XUT A;  2CFQ A;  4GBY A;  2Y5Y A; 
#chains in the Genus database with same CATH topology
 3O7P A;  1EER A;  3BPO A;  4LRL A;  2HYM B;  4A3L D;  4UVM A;  1Y1W D;  1HUL A;  3FKI D;  3L5X A;  3MZG A;  2JA5 D;  5D59 A;  4J4L C;  4YB9 D;  1Y6K L;  3HOX D;  2JA7 D;  3DUH C;  1Y14 A;  1HIK A;  5LQB A;  1EVS A;  3HOW D;  1F6F A;  5C7X A;  4QIQ A;  4IKZ A;  1CYL A;  2B63 D;  2B90 A;  1M47 A;  3B5K A;  4JR9 A;  1PW4 A;  3EJJ A;  3HOV D;  4DOH A;  1PGR A;  4EXN A;  1A22 A;  3H3V E;  1M4R A;  1LQS L;  4BBS D;  4DKD A;  5FLM D;  1AX8 A;  1Y1V D;  4NI7 A;  4A3K D;  3D85 C;  4NN5 A;  1BP3 A;  3IRH A;  4D2D A;  4IKW A;  1P9M B;  2R93 D;  1A7M A;  1M49 A;  3NPZ A;  4BBR D;  5EQI A;  1V7N V;  4U4T A;  1F45 B;  4TPG A;  4Q65 A;  3HOZ D;  3HOY D;  1HGU A;  1M48 A;  1ITF A;  1IK0 A;  1INR A;  1ALU A;  4IU8 A;  1IAR A;  2B8Z A;  5C3E D;  1N1F A;  1VLK A;  1AU1 A;  1CNT 1;  4A3C D;  4A93 D;  2JA6 D;  3D48 P;  1M4B A;  5C65 A;  3PO3 D;  3N06 A;  3NCE A;  4PYP A;  3I4M D;  4JRE A;  2IL6 A;  3QWR B;  2XQB A;  1GNC A;  4WRL B;  1RFB A;  5D71 A;  1AXI A;  1ILK A;  2D48 A;  1FYH A;  1HWH A;  4FA8 E;  3LB6 A;  4APS A;  1PW6 A;  1D9C A;  3PO2 D;  3N0P A;  2L3O A;  3QT2 C;  5D28 B;  2Y5Y A;  4LEP A;  1FG9 A;  4A3F D;  5FHX A;  1SCF A;  5GXB A;  3DI3 A;  2OQP A;  4YQX A;  3SE4 B;  4A3D D;  4TPJ A;  5C4X D;  4LDS A;  1M4A A;  4O9H A;  4BY1 D;  2KZ1 A;  1CN4 C;  3S9D A;  3DLQ I;  2Z3R A;  2C35 A;  4OAA A;  4GS7 A;  1YKB A;  1HIJ A;  3NCC A;  5TS9 A;  1Y6N L;  1I1R B;  4YPG C;  5IYC D;  4GRW A;  3PIW A;  1NBP A;  2B91 A;  3BES L;  4A3M D;  3BPN A;  4RS1 A;  1EXZ A;  3QAZ A;  2Z3Q A;  2R7Z D;  3UEZ E;  1CD9 A;  3QB1 A;  4ZYR A;  3L5W I;  2CFP A;  4A3B D;  1HZI A;  3UX9 A;  4DKF A;  5IYD D;  3SE3 B;  3D87 A;  3G9V B;  1J7V L;  5FUC A;  3NCB A;  3G6D A;  3PIV A;  3OQ3 A;  4X51 A;  1Z7C A;  3LB6 B;  4ZWC A;  3DI2 A;  3AYH A;  2LAG A;  4U4W A;  2B8U A;  1WCM D;  2GMF A;  1ITI A;  4EXP A;  1BGC A;  4Z5R D;  1LK3 A;  2E9W C;  1JLI A;  3OG4 A;  1D9G A;  5D6K A;  5A2O A;  3HHC A;  3NCF A;  4YDY I;  4NEM A;  4ZWB A;  4A3G D;  2B5I A;  5D22 A;  3I4N D;  5E4E A;  1IJZ A;  4NKQ C;  1RW5 A;  1GA3 A;  4XNJ A;  4GBY A;  1IRL A;  2R92 D;  1BBN A;  1WU3 I;  1HUW A;  1RCB A;  4BXX D;  1Z92 A;  4TPH A;  2CFQ A;  1KF9 A;  3WCY I;  4JA3 A;  4GC0 A;  1PV6 A;  2O6I A;  2V8N A;  4YUE C;  2Q14 A;  4D2B A;  3H0G D;  3HOU D;  4XNI A;  4NN7 A;  4I77 Z;  4GBZ A;  1ITL A;  2CYK A;  5C44 D;  3UF5 A;  4DKC A;  1PV7 A;  4IKV A;  2B8X A;  1V7M V;  2ILK A;  3INK C;  3EW3 A;  1CSG A;  4D2C A;  4NN6 A;  3HHR A;  4PS4 A;  4A3J D;  1M4C A;  1QVN A;  2INT A;  2D9Q A;  5EQG A;  2Q98 A;  1HWG A;  4U4V A;  5D70 A;  2H24 A;  1ETE A;  4NEJ A;  4CNI C;  4IU9 A;  2B8Y A;  4J05 A;  5IYB D;  3HMX B;  1BUY A;  1RHG A;  3WDO A;  1IL6 A;  2O26 A;  1BGD A;  3QB7 A;  3UF2 A;  2VUM D;  1PVH B;  1LKI A;  3Q1S I;  2Q7N B;  4O6K A;  5D72 A;  4ZF7 A;  5L6Y C;  3DGC L;  2L3Y A;  4A3E D;  4NI9 A;  1B5L A;  1BCN A;  5KNH I;  4W6V A;  3BPL A;  1EKU A;  5IP7 D;  4BY7 D;  2JA8 D;  2LMS A;  4IKX A;  2ERJ D;  2XUT A;  1PY2 A;  3TGX B;  5IP9 D;  3VA2 A;  5A2N A;  2O27 A;  1EMR A;  4YBQ A;  4DKE A;  4ZS7 A;  4ZW9 A;  4OH3 A;  3O7Q A;  2PSM A;  4MHL A;  4IKY A;  1BGE A;  1ITM A;  5D58 A;  4A3I D;  1Y6M L;  5EQH A;  3OG6 A; 
#chains in the Genus database with same CATH homology
 3O7P A;  5EQG A;  4ZWC A;  4LEP A;  4OAA A;  1PV7 A;  4U4V A;  4IKV A;  5D6K A;  4U4T A;  5EQI A;  4TPG A;  5A2N A;  4TPH A;  4Q65 A;  5A2O A;  5C65 A;  4YBQ A;  4PYP A;  4IU9 A;  4QIQ A;  4U4W A;  4ZWB A;  4ZYR A;  2CFP A;  4UVM A;  5GXB A;  4JA3 A;  4GC0 A;  4APS A;  4ZW9 A;  4IKZ A;  4J05 A;  4D2C A;  1PV6 A;  4OH3 A;  4TPJ A;  3O7Q A;  4D2D A;  4LDS A;  4IKW A;  4JRE A;  4W6V A;  2V8N A;  4IU8 A;  4IKY A;  4D2B A;  5D59 A;  5D58 A;  4JR9 A;  3WDO A;  4YB9 D;  1PW4 A;  4XNI A;  5EQH A;  4IKX A;  4XNJ A;  4GBZ A;  2XUT A;  2CFQ A;  4GBY A;  2Y5Y A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4TPGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations