4U4VA

Structure of a nitrate/nitrite antiporter nark in apo inward-open state
Total Genus 180

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
451
structure length
442
Chain Sequence
AVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (14-15)TI1 (19-22)AH1 (23-59)AH4 (130-157)TI3 (125-128)TI2 (59-62)AH11 (392-432)AH3 (101-123)3H1 (62-65)TIV1 (123-126)AH2 (71-99)EMPTYAH5 (160-189)AH7 (254-284)S2 (202-203)TI4 (204-207)TI5 (285-288)TI6 (289-292)TI7 (290-293)AH10 (348-388)AH12 (435-457)AH8 (295-315)TIV4 (340-344)AH9 (317-334)3H4 (335-338)TIV5 (341-345)TVIII1 (15-18)AH6 (213-233)S3 (209-210)S4 (236-237)TIV3 (291-294)3H2 (195-197)TIV2 (192-195)3H3 (250-252)Updating...
connected with : NaN
molecule tags Transport protein
source organism Escherichia coli str. k-12 substr. mg1655
publication title Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
pubmed doi rcsb
molecule keywords Nitrate/nitrite transporter NarK
total genus 180
structure length 442
sequence length 451
ec nomenclature
pdb deposition date 2014-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07690 MFS_1 Major Facilitator Superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4u4vA01
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4u4vA02
3WDOA 4D2BA 5EQIA 4IKZA 5A2OA 3O7QA 4JREA 5A2NA 4GBZA 4IKYA 4TPJA 4YBQA 2XUTA 4OAAA 1PV6A 4TPGA 5D58A 4JR9A 4LEPA 1PV7A 3O7PA 4IKWA 4J05A 4D2DA 4IU9A 4U4VA 5GXBA 4U4TA 2Y5YA 5EQGA 4IKVA 4TPHA 4YB9D 5D6KA 5C65A 4ZWCA 4QIQA 4ZWBA 4OH3A 4APSA 4JA3A 1PW4A 2CFPA 4PYPA 2CFQA 4LDSA 4XNJA 5EQHA 4D2CA 4GBYA 5D59A 2V8NA 4XNIA 4GC0A 4ZYRA 4IU8A 4UVMA 4U4WA 4Q65A 4W6VA 4ZW9A 4IKXA
chains in the Genus database with same CATH superfamily
4BBRD 5EQIA 4YUEC 3PIVA 1SCFA 3QWRB 1Y1WD 3DGCL 1I1RB 5D6KA 1BBNA 1PW4A 3PO3D 2LAGA 2V8NA 2R93D 5D70A 3SE4B 5C4XD 3QB1A 4A3FD 1JLIA 2Z3RA 3NCEA 4IKZA 4A93D 3HOYD 3D48P 4D2DA 4U4VA 1KF9A 4LRLA 4YDYI 3DLQI 1Y1VD 5L6YC 1GA3A 3D85C 2E9WC 3FKID 3QB7A 3HOXD 4IKXA 1HIKA 4O9HA 1ITLA 2PSMA 4DOHA 1V7MV 1EKUA 1M49A 1RHGA 2D48A 4ZS7A 5GXBA 1CD9A 2Z3QA 5EQGA 2IL6A 5C65A 2B8XA 4A3LD 1AXIA 4DKCA 4Q65A 3UF2A 1WU3I 1CN4C 3I4MD 3O7QA 2HYMB 4PS4A 1HGUA 1EXZA 1M4BA 2XUTA 4EXPA 3PO2D 4A3MD 1M4RA 3DI3A 1ETEA 3DUHC 4NN7A 5IYCD 4QIQA 3NPZA 2CFPA 2CFQA 4LDSA 2VUMD 3I4ND 3TGXB 4EXNA 5C7XA 2O27A 5D71A 4UVMA 3LB6B 5LQBA 4O6KA 3G6DA 1INRA 5A2OA 1VLKA 4TPJA 4YBQA 3HHCA 2L3YA 4A3CD 2B90A 3NCCA 4DKFA 2O6IA 2B63D 1HULA 4APSA 1V7NV 3MZGA 3VA2A 1CNT1 1CSGA 5D22A 1LKIA 4NEJA 3PIWA 4CNIC 1J7VL 1Y6ML 3WDOA 1RW5A 2H24A 1IL6A 5D58A 3HOZD 4J05A 1D9CA 1D9GA 3OG4A 2L3OA 4A3KD 4A3DD 4D2CA 1LQSL 1PW6A 2O26A 1BCNA 1HUWA 3HOWD 1PVHB 2KZ1A 3QAZA 4MHLA 4RS1A 2Q98A 2B8YA 4FA8E 4TPGA 1M48A 5D72A 2JA5D 3O7PA 5FHXA 5FUCA 1NBPA 4GS7A 3UF5A 1HWGA 3H3VE 4W6VA 4D2BA 1AU1A 4NN6A 3INKC 4BBSD 3L5WI 3H0GD 2R7ZD 4IKWA 3L5XA 3S9DA 4Z5RD 5KNHI 4XNJA 5EQHA 1N1FA 1PY2A 1WCMD 1AX8A 1QVNA 3BPLA 3OQ3A 1BP3A 5E4EA 2LMSA 4GBZA 1F45B 1EMRA 4JREA 3D87A 3G9VB 3HMXB 1P9MB 3UEZE 1ITFA 4BY1D 4GRWA 2B8UA 4OH3A 1YKBA 4JA3A 1BUYA 1EVSA 1HWHA 5D59A 3WCYI 3HOUD 4A3ED 1IJZA 4A3GD 3Q1SI 3B5KA 1IRLA 4A3JD 1M47A 3N0PA 1PV6A 3SE3B 4BXXD 4X51A 4IKVA 1HZIA 3HOVD 1RFBA 4PYPA 5D28B 2B8ZA 5C44D 2JA8D 1FYHA 1ITIA 1Z7CA 3DI2A 4A3BD 4JR9A 1ILKA 1BGCA 4YB9D 1IK0A 1PGRA 4ZWBA 1M4AA 3AYHA 1IARA 2INTA 1BGDA 4DKDA 5FLMD 4ZW9A 2OQPA 5TS9A 4LEPA 2JA6D 4IU9A 1Y6KL 1RCBA 1FG9A 5IYBD 3OG6A 3UX9A 1F6FA 2B91A 5A2NA 2XQBA 4NI9A 3NCBA 1ITMA 4NN5A 4BY7D 4GBYA 4XNIA 5IP7D 4ZYRA 4WRLB 1M4CA 5C3ED 2Q14A 2Q7NB 4A3ID 4I77Z 1Z92A 1EERA 4NKQC 4DKEA 1PV7A 3IRHA 4TPHA 1GNCA 2CYKA 5IYDD 4GC0A 4ZF7A 5IP9D 4IU8A 4J4LC 4U4WA 1B5LA 1CYLA 4YPGC 3NCFA 1ALUA 1Y6NL 4U4TA 1HIJA 4NI7A 1A22A 2GMFA 1A7MA 3EJJA 2C35A 3EW3A 3LB6A 2B5IA 1Y14A 3HHRA 4YQXA 4IKYA 4OAAA 2ILKA 3BPOA 2D9QA 2Y5YA 2ERJD 4NEMA 2JA7D 4ZWCA 3BPNA 3N06A 1BGEA 2R92D 3QT2C 1LK3A 3BESL
chains in the Genus database with same CATH topology
3WDOA 4D2BA 5EQIA 4IKZA 5A2OA 3O7QA 4JREA 5A2NA 4GBZA 4IKYA 4TPJA 4YBQA 2XUTA 4OAAA 1PV6A 4TPGA 5D58A 4JR9A 4LEPA 1PV7A 3O7PA 4IKWA 4J05A 4D2DA 4IU9A 4U4VA 5GXBA 4U4TA 2Y5YA 5EQGA 4IKVA 4TPHA 4YB9D 5D6KA 5C65A 4ZWCA 4QIQA 4ZWBA 4OH3A 4APSA 4JA3A 1PW4A 2CFPA 4PYPA 2CFQA 4LDSA 4XNJA 5EQHA 4D2CA 4GBYA 5D59A 2V8NA 4XNIA 4GC0A 4ZYRA 4IU8A 4UVMA 4U4WA 4Q65A 4W6VA 4ZW9A 4IKXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WDO A;  4D2B A;  5EQI A;  4IKZ A;  5A2O A;  3O7Q A;  4JRE A;  5A2N A;  4GBZ A;  4IKY A;  4TPJ A;  4YBQ A;  2XUT A;  4OAA A;  1PV6 A;  4TPG A;  5D58 A;  4JR9 A;  4LEP A;  1PV7 A;  3O7P A;  4IKW A;  4J05 A;  4D2D A;  4IU9 A;  4U4V A;  5GXB A;  4U4T A;  2Y5Y A;  5EQG A;  4IKV A;  4TPH A;  4YB9 D;  5D6K A;  5C65 A;  4ZWC A;  4QIQ A;  4ZWB A;  4OH3 A;  4APS A;  4JA3 A;  1PW4 A;  2CFP A;  4PYP A;  2CFQ A;  4LDS A;  4XNJ A;  5EQH A;  4D2C A;  4GBY A;  5D59 A;  2V8N A;  4XNI A;  4GC0 A;  4ZYR A;  4IU8 A;  4UVM A;  4U4W A;  4Q65 A;  4W6V A;  4ZW9 A;  4IKX A; 
#chains in the Genus database with same CATH topology
 4BBR D;  5EQI A;  4YUE C;  3PIV A;  1SCF A;  3QWR B;  1Y1W D;  3DGC L;  1I1R B;  5D6K A;  1BBN A;  1PW4 A;  3PO3 D;  2LAG A;  2V8N A;  2R93 D;  5D70 A;  3SE4 B;  5C4X D;  3QB1 A;  4A3F D;  1JLI A;  2Z3R A;  3NCE A;  4IKZ A;  4A93 D;  3HOY D;  3D48 P;  4D2D A;  4U4V A;  1KF9 A;  4LRL A;  4YDY I;  3DLQ I;  1Y1V D;  5L6Y C;  1GA3 A;  3D85 C;  2E9W C;  3FKI D;  3QB7 A;  3HOX D;  4IKX A;  1HIK A;  4O9H A;  1ITL A;  2PSM A;  4DOH A;  1V7M V;  1EKU A;  1M49 A;  1RHG A;  2D48 A;  4ZS7 A;  5GXB A;  1CD9 A;  2Z3Q A;  5EQG A;  2IL6 A;  5C65 A;  2B8X A;  4A3L D;  1AXI A;  4DKC A;  4Q65 A;  3UF2 A;  1WU3 I;  1CN4 C;  3I4M D;  3O7Q A;  2HYM B;  4PS4 A;  1HGU A;  1EXZ A;  1M4B A;  2XUT A;  4EXP A;  3PO2 D;  4A3M D;  1M4R A;  3DI3 A;  1ETE A;  3DUH C;  4NN7 A;  5IYC D;  4QIQ A;  3NPZ A;  2CFP A;  2CFQ A;  4LDS A;  2VUM D;  3I4N D;  3TGX B;  4EXN A;  5C7X A;  2O27 A;  5D71 A;  4UVM A;  3LB6 B;  5LQB A;  4O6K A;  3G6D A;  1INR A;  5A2O A;  1VLK A;  4TPJ A;  4YBQ A;  3HHC A;  2L3Y A;  4A3C D;  2B90 A;  3NCC A;  4DKF A;  2O6I A;  2B63 D;  1HUL A;  4APS A;  1V7N V;  3MZG A;  3VA2 A;  1CNT 1;  1CSG A;  5D22 A;  1LKI A;  4NEJ A;  3PIW A;  4CNI C;  1J7V L;  1Y6M L;  3WDO A;  1RW5 A;  2H24 A;  1IL6 A;  5D58 A;  3HOZ D;  4J05 A;  1D9C A;  1D9G A;  3OG4 A;  2L3O A;  4A3K D;  4A3D D;  4D2C A;  1LQS L;  1PW6 A;  2O26 A;  1BCN A;  1HUW A;  3HOW D;  1PVH B;  2KZ1 A;  3QAZ A;  4MHL A;  4RS1 A;  2Q98 A;  2B8Y A;  4FA8 E;  4TPG A;  1M48 A;  5D72 A;  2JA5 D;  3O7P A;  5FHX A;  5FUC A;  1NBP A;  4GS7 A;  3UF5 A;  1HWG A;  3H3V E;  4W6V A;  4D2B A;  1AU1 A;  4NN6 A;  3INK C;  4BBS D;  3L5W I;  3H0G D;  2R7Z D;  4IKW A;  3L5X A;  3S9D A;  4Z5R D;  5KNH I;  4XNJ A;  5EQH A;  1N1F A;  1PY2 A;  1WCM D;  1AX8 A;  1QVN A;  3BPL A;  3OQ3 A;  1BP3 A;  5E4E A;  2LMS A;  4GBZ A;  1F45 B;  1EMR A;  4JRE A;  3D87 A;  3G9V B;  3HMX B;  1P9M B;  3UEZ E;  1ITF A;  4BY1 D;  4GRW A;  2B8U A;  4OH3 A;  1YKB A;  4JA3 A;  1BUY A;  1EVS A;  1HWH A;  5D59 A;  3WCY I;  3HOU D;  4A3E D;  1IJZ A;  4A3G D;  3Q1S I;  3B5K A;  1IRL A;  4A3J D;  1M47 A;  3N0P A;  1PV6 A;  3SE3 B;  4BXX D;  4X51 A;  4IKV A;  1HZI A;  3HOV D;  1RFB A;  4PYP A;  5D28 B;  2B8Z A;  5C44 D;  2JA8 D;  1FYH A;  1ITI A;  1Z7C A;  3DI2 A;  4A3B D;  4JR9 A;  1ILK A;  1BGC A;  4YB9 D;  1IK0 A;  1PGR A;  4ZWB A;  1M4A A;  3AYH A;  1IAR A;  2INT A;  1BGD A;  4DKD A;  5FLM D;  4ZW9 A;  2OQP A;  5TS9 A;  4LEP A;  2JA6 D;  4IU9 A;  1Y6K L;  1RCB A;  1FG9 A;  5IYB D;  3OG6 A;  3UX9 A;  1F6F A;  2B91 A;  5A2N A;  2XQB A;  4NI9 A;  3NCB A;  1ITM A;  4NN5 A;  4BY7 D;  4GBY A;  4XNI A;  5IP7 D;  4ZYR A;  4WRL B;  1M4C A;  5C3E D;  2Q14 A;  2Q7N B;  4A3I D;  4I77 Z;  1Z92 A;  1EER A;  4NKQ C;  4DKE A;  1PV7 A;  3IRH A;  4TPH A;  1GNC A;  2CYK A;  5IYD D;  4GC0 A;  4ZF7 A;  5IP9 D;  4IU8 A;  4J4L C;  4U4W A;  1B5L A;  1CYL A;  4YPG C;  3NCF A;  1ALU A;  1Y6N L;  4U4T A;  1HIJ A;  4NI7 A;  1A22 A;  2GMF A;  1A7M A;  3EJJ A;  2C35 A;  3EW3 A;  3LB6 A;  2B5I A;  1Y14 A;  3HHR A;  4YQX A;  4IKY A;  4OAA A;  2ILK A;  3BPO A;  2D9Q A;  2Y5Y A;  2ERJ D;  4NEM A;  2JA7 D;  4ZWC A;  3BPN A;  3N06 A;  1BGE A;  2R92 D;  3QT2 C;  1LK3 A;  3BES L; 
#chains in the Genus database with same CATH homology
 3WDO A;  4D2B A;  5EQI A;  4IKZ A;  5A2O A;  3O7Q A;  4JRE A;  5A2N A;  4GBZ A;  4IKY A;  4TPJ A;  4YBQ A;  2XUT A;  4OAA A;  1PV6 A;  4TPG A;  5D58 A;  4JR9 A;  4LEP A;  1PV7 A;  3O7P A;  4IKW A;  4J05 A;  4D2D A;  4IU9 A;  4U4V A;  5GXB A;  4U4T A;  2Y5Y A;  5EQG A;  4IKV A;  4TPH A;  4YB9 D;  5D6K A;  5C65 A;  4ZWC A;  4QIQ A;  4ZWB A;  4OH3 A;  4APS A;  4JA3 A;  1PW4 A;  2CFP A;  4PYP A;  2CFQ A;  4LDS A;  4XNJ A;  5EQH A;  4D2C A;  4GBY A;  5D59 A;  2V8N A;  4XNI A;  4GC0 A;  4ZYR A;  4IU8 A;  4UVM A;  4U4W A;  4Q65 A;  4W6V A;  4ZW9 A;  4IKX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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