4UVMA

In meso crystal structure of the pot family transporter peptso
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
505
structure length
505
Chain Sequence
PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Gating Topology of the Proton-Coupled Oligopeptide Symporters.
pubmed doi rcsb
molecule tags Transport protein
source organism Shewanella oneidensis
molecule keywords GLUTATHIONE UPTAKE TRANSPORTER
total genus 188
structure length 505
sequence length 505
ec nomenclature
pdb deposition date 2014-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4uvmA00
2XUTA 4XNIA 4U4TA 5EQGA 4TPHA 5A2OA 4GBZA 5EQIA 5D59A 4UVMA 4U4WA 1PW4A 4IKVA 4OAAA 5D58A 4ZWBA 4ZW9A 4GC0A 5GXBA 4OH3A 4JA3A 2Y5YA 4TPGA 4JR9A 4PYPA 5D6KA 3O7PA 4APSA 4LEPA 4D2BA 4IKZA 2V8NA 4QIQA 4YB9D 4D2DA 4XNJA 1PV7A 4IKXA 4IU8A 4ZYRA 4TPJA 4Q65A 4U4VA 4IU9A 4JREA 4LDSA 4IKYA 4D2CA 5A2NA 5C65A 2CFPA 4ZWCA 3WDOA 1PV6A 3O7QA 4J05A 2CFQA 4YBQA 4GBYA 5EQHA 4IKWA 4W6VA
chains in the Genus database with same CATH superfamily
4BBSD 5EQIA 1D9CA 3HOVD 1Z92A 3HOWD 1ITLA 1Y1VD 3MZGA 3O7PA 4NI9A 4IKZA 1LQSL 2JA5D 4O6KA 2OQPA 1RCBA 1PV6A 2GMFA 1Z7CA 1BBNA 5C3ED 2Z3QA 4XNIA 3QB1A 5A2OA 4WRLB 1BUYA 3G6DA 2JA6D 5GXBA 2Z3RA 4CNIC 3DGCL 1LKIA 1Y14A 3SE3B 4IU9A 5A2NA 5C4XD 1B5LA 3H0GD 1EKUA 1IRLA 4J05A 4Z5RD 4GS7A 1RHGA 1A22A 1ILKA 4BXXD 1PW6A 4GC0A 1AX8A 2Q98A 4TPGA 1EMRA 3S9DA 3D48P 5IP7D 1CN4C 4ZYRA 1CD9A 1AU1A 4A3CD 2KZ1A 3QWRB 3BPOA 2VUMD 3B5KA 3NPZA 4JA3A 2Y5YA 3PO2D 1HUWA 1M47A 1INRA 4D2DA 3HOXD 3WCYI 3DLQI 5IYBD 4D2CA 3HHRA 1ALUA 3O7QA 4GBYA 3HOUD 1M4CA 4NI7A 2B91A 5L6YC 3Q1SI 5IYDD 1IJZA 1ETEA 4NN5A 4YB9D 4A3GD 1Y6NL 2INTA 5D70A 3N06A 1Y1WD 2CFPA 2O6IA 1CYLA 1V7NV 4O9HA 4X51A 3SE4B 2B8UA 2IL6A 4TPHA 1D9GA 2HYMB 1AXIA 1HULA 2H24A 4I77Z 3D87A 3UEZE 3DI2A 1V7MV 4A3MD 4A3JD 4ZS7A 2E9WC 2O27A 3OG6A 1GA3A 4NN7A 1PGRA 2C35A 3L5WI 1LK3A 1SCFA 4UVMA 1PW4A 5D58A 4ZF7A 5E4EA 1HWGA 4A3FD 1IL6A 1F6FA 3OQ3A 4NEJA 1BGEA 4IU8A 5C65A 3WDOA 4YUEC 1EXZA 1HZIA 2XUTA 5EQGA 1HWHA 3N0PA 3PIWA 4ZWBA 4ZW9A 4RS1A 3I4ND 4BY1D 1HGUA 3LB6B 2B90A 3L5XA 1PV7A 2Q7NB 1BGDA 1CNT1 1QVNA 3UF2A 5D71A 1EVSA 1BCNA 4DKCA 3BPNA 4A93D 1BP3A 4YQXA 3TGXB 5IYCD 5D59A 1JLIA 1EERA 3EW3A 5D6KA 4APSA 2JA7D 1IARA 5IP9D 1HIKA 4A3BD 2D9QA 3NCFA 4BBRD 2L3YA 2CFQA 1M49A 3QAZA 3PO3D 5FLMD 3IRHA 1RFBA 2PSMA 4OAAA 5FUCA 3INKC 1WCMD 4NKQC 4QIQA 4IKXA 4LRLA 2CYKA 2B8XA 4DKFA 1NBPA 4DOHA 3VA2A 3NCEA 4IKWA 4EXNA 2LAGA 2D48A 1GNCA 4U4WA 4A3KD 3I4MD 2O26A 4JR9A 4PYPA 1N1FA 5LQBA 5KNHI 3FKID 4XNJA 2Q14A 1M48A 4FA8E 2R93D 3LB6A 4DKDA 3PIVA 4PS4A 4OH3A 3QT2C 3UF5A 4NN6A 4D2BA 3BPLA 5D72A 1J7VL 4JREA 4ZWCA 1Y6ML 4BY7D 1ITIA 1I1RB 4U4TA 2B5IA 3G9VB 1A7MA 4GBZA 1IK0A 3HHCA 2L3OA 4IKVA 5D22A 2LMSA 1KF9A 4MHLA 3HMXB 4LEPA 2V8NA 1CSGA 3HOYD 2B8ZA 1RW5A 1ITFA 4TPJA 2R92D 4J4LC 2ILKA 2B8YA 4A3DD 4A3ID 1WU3I 4YPGC 3OG4A 3DI3A 1Y6KL 3D85C 3UX9A 1FYHA 4U4VA 4NEMA 4DKEA 1M4BA 2ERJD 4YBQA 5EQHA 4W6VA 1F45B 1HIJA 3HOZD 1M4RA 4A3ED 1YKBA 2R7ZD 3NCCA 4LDSA 3AYHA 5D28B 4YDYI 3DUHC 5C7XA 1VLKA 3NCBA 2B63D 4A3LD 2XQBA 3QB7A 1BGCA 4EXPA 1FG9A 1PY2A 3BESL 1ITMA 1M4AA 1PVHB 5TS9A 5C44D 5FHXA 2JA8D 4Q65A 1P9MB 3H3VE 4IKYA 4GRWA 3EJJA
chains in the Genus database with same CATH topology
2XUTA 4XNIA 4U4TA 5EQGA 4TPHA 5A2OA 4GBZA 5EQIA 5D59A 4UVMA 4U4WA 1PW4A 4IKVA 4OAAA 5D58A 4ZWBA 4ZW9A 4GC0A 5GXBA 4OH3A 4JA3A 2Y5YA 4TPGA 4JR9A 4PYPA 5D6KA 3O7PA 4APSA 4LEPA 4D2BA 4IKZA 2V8NA 4QIQA 4YB9D 4D2DA 4XNJA 1PV7A 4IKXA 4IU8A 4ZYRA 4TPJA 4Q65A 4U4VA 4IU9A 4JREA 4LDSA 4IKYA 4D2CA 5A2NA 5C65A 2CFPA 4ZWCA 3WDOA 1PV6A 3O7QA 4J05A 2CFQA 4YBQA 4GBYA 5EQHA 4IKWA 4W6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XUT A;  4XNI A;  4U4T A;  5EQG A;  4TPH A;  5A2O A;  4GBZ A;  5EQI A;  5D59 A;  4UVM A;  4U4W A;  1PW4 A;  4IKV A;  4OAA A;  5D58 A;  4ZWB A;  4ZW9 A;  4GC0 A;  5GXB A;  4OH3 A;  4JA3 A;  2Y5Y A;  4TPG A;  4JR9 A;  4PYP A;  5D6K A;  3O7P A;  4APS A;  4LEP A;  4D2B A;  4IKZ A;  2V8N A;  4QIQ A;  4YB9 D;  4D2D A;  4XNJ A;  1PV7 A;  4IKX A;  4IU8 A;  4ZYR A;  4TPJ A;  4Q65 A;  4U4V A;  4IU9 A;  4JRE A;  4LDS A;  4IKY A;  4D2C A;  5A2N A;  5C65 A;  2CFP A;  4ZWC A;  3WDO A;  1PV6 A;  3O7Q A;  4J05 A;  2CFQ A;  4YBQ A;  4GBY A;  5EQH A;  4IKW A;  4W6V A; 
#chains in the Genus database with same CATH topology
 4BBS D;  5EQI A;  1D9C A;  3HOV D;  1Z92 A;  3HOW D;  1ITL A;  1Y1V D;  3MZG A;  3O7P A;  4NI9 A;  4IKZ A;  1LQS L;  2JA5 D;  4O6K A;  2OQP A;  1RCB A;  1PV6 A;  2GMF A;  1Z7C A;  1BBN A;  5C3E D;  2Z3Q A;  4XNI A;  3QB1 A;  5A2O A;  4WRL B;  1BUY A;  3G6D A;  2JA6 D;  5GXB A;  2Z3R A;  4CNI C;  3DGC L;  1LKI A;  1Y14 A;  3SE3 B;  4IU9 A;  5A2N A;  5C4X D;  1B5L A;  3H0G D;  1EKU A;  1IRL A;  4J05 A;  4Z5R D;  4GS7 A;  1RHG A;  1A22 A;  1ILK A;  4BXX D;  1PW6 A;  4GC0 A;  1AX8 A;  2Q98 A;  4TPG A;  1EMR A;  3S9D A;  3D48 P;  5IP7 D;  1CN4 C;  4ZYR A;  1CD9 A;  1AU1 A;  4A3C D;  2KZ1 A;  3QWR B;  3BPO A;  2VUM D;  3B5K A;  3NPZ A;  4JA3 A;  2Y5Y A;  3PO2 D;  1HUW A;  1M47 A;  1INR A;  4D2D A;  3HOX D;  3WCY I;  3DLQ I;  5IYB D;  4D2C A;  3HHR A;  1ALU A;  3O7Q A;  4GBY A;  3HOU D;  1M4C A;  4NI7 A;  2B91 A;  5L6Y C;  3Q1S I;  5IYD D;  1IJZ A;  1ETE A;  4NN5 A;  4YB9 D;  4A3G D;  1Y6N L;  2INT A;  5D70 A;  3N06 A;  1Y1W D;  2CFP A;  2O6I A;  1CYL A;  1V7N V;  4O9H A;  4X51 A;  3SE4 B;  2B8U A;  2IL6 A;  4TPH A;  1D9G A;  2HYM B;  1AXI A;  1HUL A;  2H24 A;  4I77 Z;  3D87 A;  3UEZ E;  3DI2 A;  1V7M V;  4A3M D;  4A3J D;  4ZS7 A;  2E9W C;  2O27 A;  3OG6 A;  1GA3 A;  4NN7 A;  1PGR A;  2C35 A;  3L5W I;  1LK3 A;  1SCF A;  4UVM A;  1PW4 A;  5D58 A;  4ZF7 A;  5E4E A;  1HWG A;  4A3F D;  1IL6 A;  1F6F A;  3OQ3 A;  4NEJ A;  1BGE A;  4IU8 A;  5C65 A;  3WDO A;  4YUE C;  1EXZ A;  1HZI A;  2XUT A;  5EQG A;  1HWH A;  3N0P A;  3PIW A;  4ZWB A;  4ZW9 A;  4RS1 A;  3I4N D;  4BY1 D;  1HGU A;  3LB6 B;  2B90 A;  3L5X A;  1PV7 A;  2Q7N B;  1BGD A;  1CNT 1;  1QVN A;  3UF2 A;  5D71 A;  1EVS A;  1BCN A;  4DKC A;  3BPN A;  4A93 D;  1BP3 A;  4YQX A;  3TGX B;  5IYC D;  5D59 A;  1JLI A;  1EER A;  3EW3 A;  5D6K A;  4APS A;  2JA7 D;  1IAR A;  5IP9 D;  1HIK A;  4A3B D;  2D9Q A;  3NCF A;  4BBR D;  2L3Y A;  2CFQ A;  1M49 A;  3QAZ A;  3PO3 D;  5FLM D;  3IRH A;  1RFB A;  2PSM A;  4OAA A;  5FUC A;  3INK C;  1WCM D;  4NKQ C;  4QIQ A;  4IKX A;  4LRL A;  2CYK A;  2B8X A;  4DKF A;  1NBP A;  4DOH A;  3VA2 A;  3NCE A;  4IKW A;  4EXN A;  2LAG A;  2D48 A;  1GNC A;  4U4W A;  4A3K D;  3I4M D;  2O26 A;  4JR9 A;  4PYP A;  1N1F A;  5LQB A;  5KNH I;  3FKI D;  4XNJ A;  2Q14 A;  1M48 A;  4FA8 E;  2R93 D;  3LB6 A;  4DKD A;  3PIV A;  4PS4 A;  4OH3 A;  3QT2 C;  3UF5 A;  4NN6 A;  4D2B A;  3BPL A;  5D72 A;  1J7V L;  4JRE A;  4ZWC A;  1Y6M L;  4BY7 D;  1ITI A;  1I1R B;  4U4T A;  2B5I A;  3G9V B;  1A7M A;  4GBZ A;  1IK0 A;  3HHC A;  2L3O A;  4IKV A;  5D22 A;  2LMS A;  1KF9 A;  4MHL A;  3HMX B;  4LEP A;  2V8N A;  1CSG A;  3HOY D;  2B8Z A;  1RW5 A;  1ITF A;  4TPJ A;  2R92 D;  4J4L C;  2ILK A;  2B8Y A;  4A3D D;  4A3I D;  1WU3 I;  4YPG C;  3OG4 A;  3DI3 A;  1Y6K L;  3D85 C;  3UX9 A;  1FYH A;  4U4V A;  4NEM A;  4DKE A;  1M4B A;  2ERJ D;  4YBQ A;  5EQH A;  4W6V A;  1F45 B;  1HIJ A;  3HOZ D;  1M4R A;  4A3E D;  1YKB A;  2R7Z D;  3NCC A;  4LDS A;  3AYH A;  5D28 B;  4YDY I;  3DUH C;  5C7X A;  1VLK A;  3NCB A;  2B63 D;  4A3L D;  2XQB A;  3QB7 A;  1BGC A;  4EXP A;  1FG9 A;  1PY2 A;  3BES L;  1ITM A;  1M4A A;  1PVH B;  5TS9 A;  5C44 D;  5FHX A;  2JA8 D;  4Q65 A;  1P9M B;  3H3V E;  4IKY A;  4GRW A;  3EJJ A; 
#chains in the Genus database with same CATH homology
 2XUT A;  4XNI A;  4U4T A;  5EQG A;  4TPH A;  5A2O A;  4GBZ A;  5EQI A;  5D59 A;  4UVM A;  4U4W A;  1PW4 A;  4IKV A;  4OAA A;  5D58 A;  4ZWB A;  4ZW9 A;  4GC0 A;  5GXB A;  4OH3 A;  4JA3 A;  2Y5Y A;  4TPG A;  4JR9 A;  4PYP A;  5D6K A;  3O7P A;  4APS A;  4LEP A;  4D2B A;  4IKZ A;  2V8N A;  4QIQ A;  4YB9 D;  4D2D A;  4XNJ A;  1PV7 A;  4IKX A;  4IU8 A;  4ZYR A;  4TPJ A;  4Q65 A;  4U4V A;  4IU9 A;  4JRE A;  4LDS A;  4IKY A;  4D2C A;  5A2N A;  5C65 A;  2CFP A;  4ZWC A;  3WDO A;  1PV6 A;  3O7Q A;  4J05 A;  2CFQ A;  4YBQ A;  4GBY A;  5EQH A;  4IKW A;  4W6V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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