4W6VA

Crystal structure of a peptide transporter from yersinia enterocolitica at 3 a resolution
Total Genus 179
50100150200250300350400450050100150
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
499
structure length
483
Chain Sequence
STNTPGGRTFFGHPYPLSGLFLSEMWERFSFYGIRPLLILFMAATVFDGGMGLPREQASAIVGIFAGSMYLAALPGGLLADNWLGQQRAVWYGSILIALGHLSIALSAFFGNDLFFIGLVFIVLGTGLFKTCISVMVGTLYKPGDARRDGGFSLFYMGINMGSFIAPLLSGWLLRTHGWHWGFGIGGIGMLVALLIFRGFAIPAMKRYDAEVGLDSSWNKPTGRWVTAIMAVVVVIIALISQGVIPINPVMIASLLVYVIAASVTLYFIYLFAFAKMSRKDRARLLVCFILLVSAAFFWSAFEQKPTSFNLFANDYTDRMVMGFEIPTVWFQSINALFIILLAPVFSWAPSSITKFVIGILCAAAGFAVMMYAAQHVLSSGGAGVSPLWLVMSILLLTLGELCLSPIGLATMTLLAPDRMRGQVMGLWFCASSLGNLAAGLIGGHVKADQLDMLPTLFARCSIALVICAAVLILLIVPIRRLM
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (7-10)TIV1 (9-12)TIV2 (12-15)TII1 (145-148)AH5 (115-142)EMPTYAH1 (18-35)TI'1 (13-16)AH4 (89-109)AH6 (149-179)AH2 (37-46)AH3 (58-84)TI7 (437-440)TI3 (220-223)TIV3 (218-221)3H2 (110-112)TIV5 (329-332)AH14 (406-424)AH9 (258-282)AH10 (288-312)TI5 (313-316)AH11 (317-325)AH13 (371-399)TI6 (436-439)TI8 (439-442)AH16 (442-462)TIV7 (466-469)TIV8 (467-470)AH17 (472-500)TIV9 (469-472)AH7 (182-214)TI4 (312-315)3H3 (337-342)AH12 (343-358)AH15 (426-434)TI9 (462-465)3H1 (49-51)TIV6 (399-402)AH8 (232-253)Updating...
connected with : NaN
molecule tags Transport protein
source organism Yersinia enterocolitica subsp. palearctica ye-p4
publication title Role of electrostatic interactions for ligand recognition and specificity of peptide transporters.
pubmed doi rcsb
molecule keywords Di-/tripeptide transporter
total genus 179
structure length 483
sequence length 499
ec nomenclature
pdb deposition date 2014-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4w6vA00
4OAAA 4IKXA 3WDOA 4LEPA 4GC0A 4ZWBA 5A2OA 4IU8A 4QIQA 4PYPA 5EQHA 5A2NA 4TPJA 5GXBA 4Q65A 4IU9A 4JA3A 4XNJA 5EQIA 4U4VA 5D58A 5EQGA 5C65A 4OH3A 4TPGA 4U4WA 4YBQA 5D6KA 4IKWA 4APSA 4UVMA 5D59A 4IKZA 4U4TA 4JR9A 4LDSA 4IKYA 2CFQA 4IKVA 4D2CA 2CFPA 1PV6A 4D2BA 4YB9D 2XUTA 4TPHA 2V8NA 1PV7A 3O7PA 4ZW9A 4ZYRA 4XNIA 3O7QA 2Y5YA 4J05A 4ZWCA 4W6VA 4GBZA 4GBYA 4JREA 1PW4A 4D2DA
chains in the Genus database with same CATH superfamily
4OAAA 1PY2A 3HHCA 4Q65A 3HOZD 1RCBA 3EW3A 4IKZA 3LB6B 4YDYI 1HZIA 3L5XA 1Z92A 5FHXA 1Y1WD 1BP3A 1HUWA 1ITFA 1N1FA 2R92D 4IKXA 3D48P 2B90A 4CNIC 1BBNA 1LK3A 4RS1A 3S9DA 1NBPA 2IL6A 1ALUA 1M47A 4YUEC 1CD9A 1HWGA 2B5IA 4IKVA 3UX9A 5IP9D 4ZS7A 3SE3B 3QAZA 2O26A 1ILKA 1EKUA 3L5WI 4I77Z 4APSA 1RFBA 5D70A 5TS9A 1V7MV 2B8YA 2PSMA 3HOYD 2CFQA 2CFPA 4YB9D 1I1RB 2R93D 1D9CA 1Y1VD 3O7QA 1CNT1 1M4CA 2OQPA 1IK0A 4TPJA 3DUHC 2Q14A 5D72A 4JA3A 1VLKA 4DKFA 5EQGA 4YQXA 2JA6D 3DLQI 2O27A 4U4TA 2JA5D 5C3ED 1IRLA 1HULA 2B8XA 1ITLA 2VUMD 3WCYI 2JA7D 4NI7A 4LEPA 5EQHA 3VA2A 2HYMB 4DKEA 4FA8E 4TPGA 4PS4A 5C44D 4A93D 1Y6ML 1M4RA 5IYBD 1M4AA 3UEZE 3NCCA 3PIVA 4YPGC 4DOHA 3PO2D 1WCMD 4ZWCA 4W6VA 3I4ND 1LKIA 1F45B 5D28B 1RHGA 4LRLA 2D48A 5LQBA 1LQSL 2Z3QA 5D58A 4A3LD 1HWHA 2B91A 5D6KA 4NN7A 1M49A 1FG9A 5FUCA 4NI9A 3O7PA 1Y6KL 4ZW9A 1Y6NL 1IJZA 4A3FD 2ILKA 1F6FA 4DKCA 4QIQA 4PYPA 2D9QA 3AYHA 4IU9A 3I4MD 3D87A 1INRA 5FLMD 4OH3A 4A3JD 2Q98A 4ZF7A 3FKID 3H3VE 1PGRA 1J7VL 1BGCA 4MHLA 2GMFA 4JREA 3DI2A 3WDOA 3OQ3A 5A2OA 1PVHB 4XNJA 4X51A 3NPZA 2L3OA 2LMSA 1BGEA 2KZ1A 4A3MD 1D9GA 5D22A 1BGDA 4A3CD 4EXPA 4TPHA 4NN6A 4BBRD 3QB1A 3G6DA 1IARA 3PO3D 1M4BA 4O9HA 5IYCD 4Z5RD 5L6YC 3HOVD 3EJJA 4IKYA 2B8UA 3SE4B 3UF2A 4D2BA 1B5LA 4XNIA 4BY1D 1A7MA 1FYHA 2Y5YA 2LAGA 1SCFA 5KNHI 2O6IA 3QB7A 1EXZA 1BCNA 3TGXB 4NN5A 4YBQA 3N06A 4UVMA 2B63D 1WU3I 1RW5A 1HIKA 1EMRA 4ZYRA 2Q7NB 2L3YA 3QWRB 2Z3RA 3BPOA 3IRHA 5A2NA 1HIJA 3MZGA 4U4VA 3LB6A 1IL6A 4A3ID 2H24A 1BUYA 1PW6A 3NCEA 1KF9A 4BXXD 3N0PA 4D2DA 4BBSD 1P9MB 5E4EA 2INTA 3Q1SI 5D71A 4A3BD 2ERJD 4D2CA 1Y14A 3B5KA 1PV7A 2B8ZA 3HOXD 2R7ZD 4J05A 4GBZA 1YKBA 4A3GD 2CYKA 3HOUD 4GC0A 4GRWA 4IU8A 4GS7A 2C35A 3OG4A 4IKWA 5IP7D 3HMXB 4NKQC 3QT2C 1ITIA 1HGUA 1PV6A 2XUTA 3H0GD 1M48A 4DKDA 4O6KA 5C65A 4A3DD 1CN4C 1ETEA 4JR9A 4A3KD 2XQBA 1QVNA 1EVSA 4J4LC 2V8NA 3UF5A 4BY7D 4GBYA 1PW4A 4ZWBA 5C7XA 5GXBA 5EQIA 3BPNA 3HHRA 4U4WA 4NEMA 1V7NV 1AXIA 1GNCA 1Z7CA 1ITMA 1A22A 3OG6A 3INKC 2JA8D 4WRLB 2E9WC 4NEJA 3NCBA 3PIWA 1GA3A 5C4XD 1AU1A 1EERA 4A3ED 1CYLA 1JLIA 3BESL 3HOWD 5D59A 3D85C 4LDSA 3DI3A 3BPLA 1AX8A 3DGCL 1CSGA 3NCFA 5IYDD 4EXNA 3G9VB
chains in the Genus database with same CATH topology
4OAAA 4IKXA 3WDOA 4LEPA 4GC0A 4ZWBA 5A2OA 4IU8A 4QIQA 4PYPA 5EQHA 5A2NA 4TPJA 5GXBA 4Q65A 4IU9A 4JA3A 4XNJA 5EQIA 4U4VA 5D58A 5EQGA 5C65A 4OH3A 4TPGA 4U4WA 4YBQA 5D6KA 4IKWA 4APSA 4UVMA 5D59A 4IKZA 4U4TA 4JR9A 4LDSA 4IKYA 2CFQA 4IKVA 4D2CA 2CFPA 1PV6A 4D2BA 4YB9D 2XUTA 4TPHA 2V8NA 1PV7A 3O7PA 4ZW9A 4ZYRA 4XNIA 3O7QA 2Y5YA 4J05A 4ZWCA 4W6VA 4GBZA 4GBYA 4JREA 1PW4A 4D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OAA A;  4IKX A;  3WDO A;  4LEP A;  4GC0 A;  4ZWB A;  5A2O A;  4IU8 A;  4QIQ A;  4PYP A;  5EQH A;  5A2N A;  4TPJ A;  5GXB A;  4Q65 A;  4IU9 A;  4JA3 A;  4XNJ A;  5EQI A;  4U4V A;  5D58 A;  5EQG A;  5C65 A;  4OH3 A;  4TPG A;  4U4W A;  4YBQ A;  5D6K A;  4IKW A;  4APS A;  4UVM A;  5D59 A;  4IKZ A;  4U4T A;  4JR9 A;  4LDS A;  4IKY A;  2CFQ A;  4IKV A;  4D2C A;  2CFP A;  1PV6 A;  4D2B A;  4YB9 D;  2XUT A;  4TPH A;  2V8N A;  1PV7 A;  3O7P A;  4ZW9 A;  4ZYR A;  4XNI A;  3O7Q A;  2Y5Y A;  4J05 A;  4ZWC A;  4W6V A;  4GBZ A;  4GBY A;  4JRE A;  1PW4 A;  4D2D A; 
#chains in the Genus database with same CATH topology
 4OAA A;  1PY2 A;  3HHC A;  4Q65 A;  3HOZ D;  1RCB A;  3EW3 A;  4IKZ A;  3LB6 B;  4YDY I;  1HZI A;  3L5X A;  1Z92 A;  5FHX A;  1Y1W D;  1BP3 A;  1HUW A;  1ITF A;  1N1F A;  2R92 D;  4IKX A;  3D48 P;  2B90 A;  4CNI C;  1BBN A;  1LK3 A;  4RS1 A;  3S9D A;  1NBP A;  2IL6 A;  1ALU A;  1M47 A;  4YUE C;  1CD9 A;  1HWG A;  2B5I A;  4IKV A;  3UX9 A;  5IP9 D;  4ZS7 A;  3SE3 B;  3QAZ A;  2O26 A;  1ILK A;  1EKU A;  3L5W I;  4I77 Z;  4APS A;  1RFB A;  5D70 A;  5TS9 A;  1V7M V;  2B8Y A;  2PSM A;  3HOY D;  2CFQ A;  2CFP A;  4YB9 D;  1I1R B;  2R93 D;  1D9C A;  1Y1V D;  3O7Q A;  1CNT 1;  1M4C A;  2OQP A;  1IK0 A;  4TPJ A;  3DUH C;  2Q14 A;  5D72 A;  4JA3 A;  1VLK A;  4DKF A;  5EQG A;  4YQX A;  2JA6 D;  3DLQ I;  2O27 A;  4U4T A;  2JA5 D;  5C3E D;  1IRL A;  1HUL A;  2B8X A;  1ITL A;  2VUM D;  3WCY I;  2JA7 D;  4NI7 A;  4LEP A;  5EQH A;  3VA2 A;  2HYM B;  4DKE A;  4FA8 E;  4TPG A;  4PS4 A;  5C44 D;  4A93 D;  1Y6M L;  1M4R A;  5IYB D;  1M4A A;  3UEZ E;  3NCC A;  3PIV A;  4YPG C;  4DOH A;  3PO2 D;  1WCM D;  4ZWC A;  4W6V A;  3I4N D;  1LKI A;  1F45 B;  5D28 B;  1RHG A;  4LRL A;  2D48 A;  5LQB A;  1LQS L;  2Z3Q A;  5D58 A;  4A3L D;  1HWH A;  2B91 A;  5D6K A;  4NN7 A;  1M49 A;  1FG9 A;  5FUC A;  4NI9 A;  3O7P A;  1Y6K L;  4ZW9 A;  1Y6N L;  1IJZ A;  4A3F D;  2ILK A;  1F6F A;  4DKC A;  4QIQ A;  4PYP A;  2D9Q A;  3AYH A;  4IU9 A;  3I4M D;  3D87 A;  1INR A;  5FLM D;  4OH3 A;  4A3J D;  2Q98 A;  4ZF7 A;  3FKI D;  3H3V E;  1PGR A;  1J7V L;  1BGC A;  4MHL A;  2GMF A;  4JRE A;  3DI2 A;  3WDO A;  3OQ3 A;  5A2O A;  1PVH B;  4XNJ A;  4X51 A;  3NPZ A;  2L3O A;  2LMS A;  1BGE A;  2KZ1 A;  4A3M D;  1D9G A;  5D22 A;  1BGD A;  4A3C D;  4EXP A;  4TPH A;  4NN6 A;  4BBR D;  3QB1 A;  3G6D A;  1IAR A;  3PO3 D;  1M4B A;  4O9H A;  5IYC D;  4Z5R D;  5L6Y C;  3HOV D;  3EJJ A;  4IKY A;  2B8U A;  3SE4 B;  3UF2 A;  4D2B A;  1B5L A;  4XNI A;  4BY1 D;  1A7M A;  1FYH A;  2Y5Y A;  2LAG A;  1SCF A;  5KNH I;  2O6I A;  3QB7 A;  1EXZ A;  1BCN A;  3TGX B;  4NN5 A;  4YBQ A;  3N06 A;  4UVM A;  2B63 D;  1WU3 I;  1RW5 A;  1HIK A;  1EMR A;  4ZYR A;  2Q7N B;  2L3Y A;  3QWR B;  2Z3R A;  3BPO A;  3IRH A;  5A2N A;  1HIJ A;  3MZG A;  4U4V A;  3LB6 A;  1IL6 A;  4A3I D;  2H24 A;  1BUY A;  1PW6 A;  3NCE A;  1KF9 A;  4BXX D;  3N0P A;  4D2D A;  4BBS D;  1P9M B;  5E4E A;  2INT A;  3Q1S I;  5D71 A;  4A3B D;  2ERJ D;  4D2C A;  1Y14 A;  3B5K A;  1PV7 A;  2B8Z A;  3HOX D;  2R7Z D;  4J05 A;  4GBZ A;  1YKB A;  4A3G D;  2CYK A;  3HOU D;  4GC0 A;  4GRW A;  4IU8 A;  4GS7 A;  2C35 A;  3OG4 A;  4IKW A;  5IP7 D;  3HMX B;  4NKQ C;  3QT2 C;  1ITI A;  1HGU A;  1PV6 A;  2XUT A;  3H0G D;  1M48 A;  4DKD A;  4O6K A;  5C65 A;  4A3D D;  1CN4 C;  1ETE A;  4JR9 A;  4A3K D;  2XQB A;  1QVN A;  1EVS A;  4J4L C;  2V8N A;  3UF5 A;  4BY7 D;  4GBY A;  1PW4 A;  4ZWB A;  5C7X A;  5GXB A;  5EQI A;  3BPN A;  3HHR A;  4U4W A;  4NEM A;  1V7N V;  1AXI A;  1GNC A;  1Z7C A;  1ITM A;  1A22 A;  3OG6 A;  3INK C;  2JA8 D;  4WRL B;  2E9W C;  4NEJ A;  3NCB A;  3PIW A;  1GA3 A;  5C4X D;  1AU1 A;  1EER A;  4A3E D;  1CYL A;  1JLI A;  3BES L;  3HOW D;  5D59 A;  3D85 C;  4LDS A;  3DI3 A;  3BPL A;  1AX8 A;  3DGC L;  1CSG A;  3NCF A;  5IYD D;  4EXN A;  3G9V B; 
#chains in the Genus database with same CATH homology
 4OAA A;  4IKX A;  3WDO A;  4LEP A;  4GC0 A;  4ZWB A;  5A2O A;  4IU8 A;  4QIQ A;  4PYP A;  5EQH A;  5A2N A;  4TPJ A;  5GXB A;  4Q65 A;  4IU9 A;  4JA3 A;  4XNJ A;  5EQI A;  4U4V A;  5D58 A;  5EQG A;  5C65 A;  4OH3 A;  4TPG A;  4U4W A;  4YBQ A;  5D6K A;  4IKW A;  4APS A;  4UVM A;  5D59 A;  4IKZ A;  4U4T A;  4JR9 A;  4LDS A;  4IKY A;  2CFQ A;  4IKV A;  4D2C A;  2CFP A;  1PV6 A;  4D2B A;  4YB9 D;  2XUT A;  4TPH A;  2V8N A;  1PV7 A;  3O7P A;  4ZW9 A;  4ZYR A;  4XNI A;  3O7Q A;  2Y5Y A;  4J05 A;  4ZWC A;  4W6V A;  4GBZ A;  4GBY A;  4JRE A;  1PW4 A;  4D2D A; 
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similar chains in the Genus database (?% sequence similarity)
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