4XNJ | Genus

Total Genus 192

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	192
sequence length	474
structure length	466
Chain Sequence	GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__2346027653800555__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__2346027653800555__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4XNJ/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__2346027653800555__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2346027653800555","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4XNJ/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__2346027653800555__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Streptococcus thermophilus lmg 18311
publication title	In meso in situ serial X-ray crystallography of soluble and membrane proteins. pubmed doi rcsb
molecule keywords	Di-or tripeptide:H+ symporter
total genus	192
structure length	466
sequence length	474
ec nomenclature
pdb deposition date	2015-01-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00854	PTR2	POT family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1250.20	Mainly Alpha	Up-down Bundle	Growth Hormone; Chain: A;	MFS general substrate transporter like domains	4xnjA00

5EQHA 4JA3A 4XNIA 2V8NA 4U4VA 4U4WA 5EQGA 4LEPA 1PV7A 4UVMA 4IKYA 4IU9A 4QIQA 4PYPA 4D2DA 2XUTA 1PW4A 4IKVA 4TPHA 4ZWBA 4Q65A 5A2NA 4IU8A 4OAAA 4GC0A 3WDOA 4APSA 4D2BA 4TPJA 3O7QA 2Y5YA 4GBYA 4U4TA 4J05A 4LDSA 4IKXA 4ZYRA 4ZWCA 4XNJA 3O7PA 5D59A 2CFPA 4ZW9A 2CFQA 5D6KA 4YBQA 1PV6A 4GBZA 4D2CA 5GXBA 4TPGA 4JR9A 5D58A 4YB9D 4W6VA 5EQIA 4OH3A 5A2OA 5C65A 4IKZA 4IKWA 4JREA
chains in the Genus database with same CATH superfamily

1BGCA 1LKIA 4IKYA 3LB6B 1INRA 3WDOA 2D9QA 2OQPA 4ZYRA 5C44D 5FHXA 2CFPA 4GS7A 1EERA 1LK3A 3PIVA 1CN4C 5GXBA 4YB9D 1M49A 3DUHC 1Y6KL 3PIWA 3IRHA 1BP3A 3UX9A 4A3LD 1A22A 1RCBA 4Q65A 3HMXB 4APSA 3WCYI 4FA8E 3BPNA 1AU1A 4DKDA 3OG4A 2R93D 5IYDD 2PSMA 1FG9A 1BBNA 1WCMD 4QIQA 1PW6A 3L5XA 4TPHA 5A2NA 5TS9A 3TGXB 1HWGA 3NCEA 2O26A 2R7ZD 2E9WC 3D87A 4BXXD 3INKC 5EQIA 1M4RA 2B91A 5IYCD 1GNCA 4I77Z 2JA5D 2GMFA 4JA3A 2JA8D 5EQGA 3FKID 3G9VB 3HOVD 1N1FA 3Q1SI 4YPGC 3PO3D 2B90A 2ILKA 1HZIA 1HULA 1ETEA 3UF2A 2C35A 4MHLA 2D48A 3HHRA 3HOUD 3QB7A 1EMRA 3EJJA 4U4WA 1CNT1 5C4XD 1GA3A 2O27A 3O7QA 5C7XA 1HIJA 3SE3B 3DI3A 3I4ND 1HUWA 3NCFA 2Z3RA 3SE4B 1M4BA 3D48P 3UEZE 1RHGA 1HIKA 3BESL 2B8UA 2KZ1A 2Q7NB 3HOWD 4IKVA 1EVSA 1RFBA 1AX8A 1Y14A 4LRLA 4NEMA 4BY1D 4RS1A 2ERJD 2VUMD 1I1RB 5D71A 1A7MA 1Z7CA 1PW4A 1WU3I 1QVNA 3EW3A 4TPJA 3MZGA 4X51A 2B8XA 1YKBA 1KF9A 5D58A 3H3VE 1D9CA 3QWRB 3NCCA 4NN7A 1V7MV 4EXNA 2B63D 1NBPA 4A3DD 4GC0A 1IARA 4DKFA 1ILKA 1AXIA 2CFQA 3QT2C 4YBQA 3HOYD 4D2CA 4A3GD 3NCBA 3QAZA 4BY7D 4A3ED 2JA7D 4ZS7A 4DKCA 4LEPA 4A3FD 4UVMA 1IRLA 4A3BD 1JLIA 3DGCL 5FLMD 1Y6NL 2LMSA 5C3ED 4LDSA 3HOZD 3HOXD 5A2OA 1PGRA 1Z92A 1EXZA 5KNHI 3DI2A 4ZF7A 4XNIA 1PVHB 1Y1WD 2B8ZA 4OAAA 3VA2A 4Z5RD 3I4MD 5L6YC 1M4AA 4EXPA 1PV6A 3NPZA 4IKWA 4A3KD 2Q14A 1ITMA 2L3OA 4D2DA 2XUTA 1Y1VD 4ZWBA 2IL6A 3QB1A 1F6FA 1CYLA 2O6IA 2Y5YA 1CSGA 4YUEC 4ZWCA 1BGDA 3N06A 4J4LC 3BPOA 3PO2D 4YQXA 4CNIC 5C65A 2LAGA 4U4VA 4A93D 1PV7A 4IU9A 4PS4A 1BCNA 4A3JD 1HGUA 4O6KA 4IKXA 4XNJA 3O7PA 5D28B 4NI9A 1B5LA 1FYHA 4GBZA 3H0GD 1HWHA 1EKUA 1J7VL 1Y6ML 4IKZA 2V8NA 3HHCA 2INTA 4BBRD 4YDYI 1RW5A 5FUCA 3OG6A 1V7NV 4J05A 4NN5A 2JA6D 4ZW9A 4NN6A 3N0PA 4DKEA 3DLQI 1SCFA 4OH3A 1ITLA 4WRLB 5D70A 1BGEA 4W6VA 2HYMB 4O9HA 2R92D 1BUYA 1ALUA 1M4CA 4A3CD 4IU8A 2Q98A 1M48A 3LB6A 4A3MD 1PY2A 3S9DA 3D85C 2B8YA 4A3ID 2B5IA 1ITFA 4GRWA 3B5KA 4PYPA 4JREA 5EQHA 2L3YA 3UF5A 5E4EA 2CYKA 4BBSD 2XQBA 4D2BA 1IJZA 3OQ3A 4GBYA 1M47A 4U4TA 4DOHA 1P9MB 1VLKA 3AYHA 5IYBD 5D22A 4TPGA 2H24A 4JR9A 1CD9A 5IP7D 3L5WI 4NI7A 5IP9D 3G6DA 1IK0A 5D72A 1D9GA 1LQSL 3BPLA 5LQBA 1IL6A 5D59A 5D6KA 1F45B 4NKQC 4NEJA 1ITIA 2Z3QA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5EQH A;  4JA3 A;  4XNI A;  2V8N A;  4U4V A;  4U4W A;  5EQG A;  4LEP A;  1PV7 A;  4UVM A;  4IKY A;  4IU9 A;  4QIQ A;  4PYP A;  4D2D A;  2XUT A;  1PW4 A;  4IKV A;  4TPH A;  4ZWB A;  4Q65 A;  5A2N A;  4IU8 A;  4OAA A;  4GC0 A;  3WDO A;  4APS A;  4D2B A;  4TPJ A;  3O7Q A;  2Y5Y A;  4GBY A;  4U4T A;  4J05 A;  4LDS A;  4IKX A;  4ZYR A;  4ZWC A;  4XNJ A;  3O7P A;  5D59 A;  2CFP A;  4ZW9 A;  2CFQ A;  5D6K A;  4YBQ A;  1PV6 A;  4GBZ A;  4D2C A;  5GXB A;  4TPG A;  4JR9 A;  5D58 A;  4YB9 D;  4W6V A;  5EQI A;  4OH3 A;  5A2O A;  5C65 A;  4IKZ A;  4IKW A;  4JRE A; 
#chains in the Genus database with same CATH topology
 1BGC A;  1LKI A;  4IKY A;  3LB6 B;  1INR A;  3WDO A;  2D9Q A;  2OQP A;  4ZYR A;  5C44 D;  5FHX A;  2CFP A;  4GS7 A;  1EER A;  1LK3 A;  3PIV A;  1CN4 C;  5GXB A;  4YB9 D;  1M49 A;  3DUH C;  1Y6K L;  3PIW A;  3IRH A;  1BP3 A;  3UX9 A;  4A3L D;  1A22 A;  1RCB A;  4Q65 A;  3HMX B;  4APS A;  3WCY I;  4FA8 E;  3BPN A;  1AU1 A;  4DKD A;  3OG4 A;  2R93 D;  5IYD D;  2PSM A;  1FG9 A;  1BBN A;  1WCM D;  4QIQ A;  1PW6 A;  3L5X A;  4TPH A;  5A2N A;  5TS9 A;  3TGX B;  1HWG A;  3NCE A;  2O26 A;  2R7Z D;  2E9W C;  3D87 A;  4BXX D;  3INK C;  5EQI A;  1M4R A;  2B91 A;  5IYC D;  1GNC A;  4I77 Z;  2JA5 D;  2GMF A;  4JA3 A;  2JA8 D;  5EQG A;  3FKI D;  3G9V B;  3HOV D;  1N1F A;  3Q1S I;  4YPG C;  3PO3 D;  2B90 A;  2ILK A;  1HZI A;  1HUL A;  1ETE A;  3UF2 A;  2C35 A;  4MHL A;  2D48 A;  3HHR A;  3HOU D;  3QB7 A;  1EMR A;  3EJJ A;  4U4W A;  1CNT 1;  5C4X D;  1GA3 A;  2O27 A;  3O7Q A;  5C7X A;  1HIJ A;  3SE3 B;  3DI3 A;  3I4N D;  1HUW A;  3NCF A;  2Z3R A;  3SE4 B;  1M4B A;  3D48 P;  3UEZ E;  1RHG A;  1HIK A;  3BES L;  2B8U A;  2KZ1 A;  2Q7N B;  3HOW D;  4IKV A;  1EVS A;  1RFB A;  1AX8 A;  1Y14 A;  4LRL A;  4NEM A;  4BY1 D;  4RS1 A;  2ERJ D;  2VUM D;  1I1R B;  5D71 A;  1A7M A;  1Z7C A;  1PW4 A;  1WU3 I;  1QVN A;  3EW3 A;  4TPJ A;  3MZG A;  4X51 A;  2B8X A;  1YKB A;  1KF9 A;  5D58 A;  3H3V E;  1D9C A;  3QWR B;  3NCC A;  4NN7 A;  1V7M V;  4EXN A;  2B63 D;  1NBP A;  4A3D D;  4GC0 A;  1IAR A;  4DKF A;  1ILK A;  1AXI A;  2CFQ A;  3QT2 C;  4YBQ A;  3HOY D;  4D2C A;  4A3G D;  3NCB A;  3QAZ A;  4BY7 D;  4A3E D;  2JA7 D;  4ZS7 A;  4DKC A;  4LEP A;  4A3F D;  4UVM A;  1IRL A;  4A3B D;  1JLI A;  3DGC L;  5FLM D;  1Y6N L;  2LMS A;  5C3E D;  4LDS A;  3HOZ D;  3HOX D;  5A2O A;  1PGR A;  1Z92 A;  1EXZ A;  5KNH I;  3DI2 A;  4ZF7 A;  4XNI A;  1PVH B;  1Y1W D;  2B8Z A;  4OAA A;  3VA2 A;  4Z5R D;  3I4M D;  5L6Y C;  1M4A A;  4EXP A;  1PV6 A;  3NPZ A;  4IKW A;  4A3K D;  2Q14 A;  1ITM A;  2L3O A;  4D2D A;  2XUT A;  1Y1V D;  4ZWB A;  2IL6 A;  3QB1 A;  1F6F A;  1CYL A;  2O6I A;  2Y5Y A;  1CSG A;  4YUE C;  4ZWC A;  1BGD A;  3N06 A;  4J4L C;  3BPO A;  3PO2 D;  4YQX A;  4CNI C;  5C65 A;  2LAG A;  4U4V A;  4A93 D;  1PV7 A;  4IU9 A;  4PS4 A;  1BCN A;  4A3J D;  1HGU A;  4O6K A;  4IKX A;  4XNJ A;  3O7P A;  5D28 B;  4NI9 A;  1B5L A;  1FYH A;  4GBZ A;  3H0G D;  1HWH A;  1EKU A;  1J7V L;  1Y6M L;  4IKZ A;  2V8N A;  3HHC A;  2INT A;  4BBR D;  4YDY I;  1RW5 A;  5FUC A;  3OG6 A;  1V7N V;  4J05 A;  4NN5 A;  2JA6 D;  4ZW9 A;  4NN6 A;  3N0P A;  4DKE A;  3DLQ I;  1SCF A;  4OH3 A;  1ITL A;  4WRL B;  5D70 A;  1BGE A;  4W6V A;  2HYM B;  4O9H A;  2R92 D;  1BUY A;  1ALU A;  1M4C A;  4A3C D;  4IU8 A;  2Q98 A;  1M48 A;  3LB6 A;  4A3M D;  1PY2 A;  3S9D A;  3D85 C;  2B8Y A;  4A3I D;  2B5I A;  1ITF A;  4GRW A;  3B5K A;  4PYP A;  4JRE A;  5EQH A;  2L3Y A;  3UF5 A;  5E4E A;  2CYK A;  4BBS D;  2XQB A;  4D2B A;  1IJZ A;  3OQ3 A;  4GBY A;  1M47 A;  4U4T A;  4DOH A;  1P9M B;  1VLK A;  3AYH A;  5IYB D;  5D22 A;  4TPG A;  2H24 A;  4JR9 A;  1CD9 A;  5IP7 D;  3L5W I;  4NI7 A;  5IP9 D;  3G6D A;  1IK0 A;  5D72 A;  1D9G A;  1LQS L;  3BPL A;  5LQB A;  1IL6 A;  5D59 A;  5D6K A;  1F45 B;  4NKQ C;  4NEJ A;  1ITI A;  2Z3Q A; 
#chains in the Genus database with same CATH homology
 5EQH A;  4JA3 A;  4XNI A;  2V8N A;  4U4V A;  4U4W A;  5EQG A;  4LEP A;  1PV7 A;  4UVM A;  4IKY A;  4IU9 A;  4QIQ A;  4PYP A;  4D2D A;  2XUT A;  1PW4 A;  4IKV A;  4TPH A;  4ZWB A;  4Q65 A;  5A2N A;  4IU8 A;  4OAA A;  4GC0 A;  3WDO A;  4APS A;  4D2B A;  4TPJ A;  3O7Q A;  2Y5Y A;  4GBY A;  4U4T A;  4J05 A;  4LDS A;  4IKX A;  4ZYR A;  4ZWC A;  4XNJ A;  3O7P A;  5D59 A;  2CFP A;  4ZW9 A;  2CFQ A;  5D6K A;  4YBQ A;  1PV6 A;  4GBZ A;  4D2C A;  5GXB A;  4TPG A;  4JR9 A;  5D58 A;  4YB9 D;  4W6V A;  5EQI A;  4OH3 A;  5A2O A;  5C65 A;  4IKZ A;  4IKW A;  4JRE A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4XNJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations