4YBQA

Rat glut5 with fv in the outward-open form
Total Genus 191
50100150200250300350400450050100150200
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
474
structure length
452
Chain Sequence
EKTGKLTLVLALATFLAAFGSSFQYGYNVAAVIESFTLTLLWSLTVSMFPFGGFIGSLMVGFLVNNLGRKGALLFNNIFSILPAILMGCSKIAKSFEIIIASRLLVGICAGISSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQLFGLRSVLASEEGWPILLGLTGVPAGLQLLLLPFFPESPRYLLIQKKNESAAEKALQTLRGWKDVDMEMEEIRKEDEAEKAAGFISVWKLFRMQSLRWQLISTIVLMAGQQLSGVNAIYYYADQIYLSAGVKSNDVQYVTAGTGAVNVFMTMVTVFVVELWGRRNLLLIGFSTCLTACIVLTVALALQNTISWMPYVSIVCVIVYVIGHAVGPSPIPALFITEIFLQSSRPSAYMIGGSVHWLSNFIVGLIFPFIQVGLGPYSFIIFAIICLLTTIYIFMVVPETKGRTFVEINQIFAKKNKV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (14-120)AH13 (370-389)EMPTYTVIII1 (187-190)3H1 (209-211)AH2 (124-152)AH15 (405-436)TII'1 (436-439)AH3 (155-186)AH5 (216-221)AH4 (190-208)AH6 (226-237)AH7 (242-259)AH16 (439-457)TIV1 (259-262)TIV3 (389-392)AH12 (340-367)AH8 (264-269)AH14 (392-401)TIV2 (270-273)AH10 (292-306)AH11 (310-338)AH9 (273-289)TI1 (221-224)Updating...
connected with : NaN
publication title Structure and mechanism of the mammalian fructose transporter GLUT5
pubmed doi rcsb
molecule keywords Solute carrier family 2, facilitated glucose transporter mem
molecule tags Transport protein/immune system
source organism Rattus norvegicus
total genus 191
structure length 452
sequence length 474
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00083 Sugar_tr Sugar (and other) transporter
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4ybqA00
3WDOA 4D2DA 4IKWA 4JA3A 2CFQA 4OH3A 5EQGA 5EQHA 3O7QA 4IKXA 4W6VA 4JREA 2XUTA 5GXBA 4U4TA 5D59A 4ZWCA 4IKZA 4TPHA 4TPJA 4ZYRA 4OAAA 4IU9A 4YBQA 4LEPA 1PV7A 4GC0A 4XNIA 5D6KA 4D2CA 5EQIA 4IKYA 5C65A 4GBZA 2V8NA 2Y5YA 4IU8A 4PYPA 4JR9A 5D58A 4TPGA 4LDSA 4Q65A 2CFPA 4ZWBA 4ZW9A 5A2OA 4APSA 5A2NA 4U4WA 4QIQA 1PW4A 3O7PA 4D2BA 4GBYA 4J05A 4YB9D 4IKVA 1PV6A 4U4VA 4XNJA 4UVMA
chains in the Genus database with same CATH superfamily
4D2DA 1EXZA 1BGEA 4CNIC 2JA5D 3QAZA 4TPHA 4BY1D 3WCYI 1FG9A 3DGCL 2ERJD 5C44D 4TPGA 4A93D 3D48P 5L6YC 3DUHC 4DKDA 3SE3B 4YB9D 3AYHA 4XNJA 2LMSA 3WDOA 2B90A 2R93D 3PO3D 1HUWA 5FHXA 1ITIA 3BPOA 2Z3RA 4DKCA 1HIJA 4NEMA 1EERA 2O6IA 4QIQA 1Y14A 3NCEA 4JA3A 4YPGC 1GNCA 1ETEA 1WU3I 1Y1WD 2R7ZD 1WCMD 3HHRA 3S9DA 1M4RA 1M48A 4J05A 3UF2A 1Z7CA 3EW3A 4OH3A 4ZF7A 3Q1SI 1IK0A 5D72A 4NI7A 1CYLA 1VLKA 5D28B 4GC0A 1HWGA 2B8UA 1ALUA 4NEJA 4BBRD 1PW6A 4X51A 3HMXB 1FYHA 1CSGA 2H24A 4O9HA 3QB1A 4YQXA 2INTA 4YBQA 2D9QA 5TS9A 1N1FA 4J4LC 3B5KA 2L3OA 3N06A 4DOHA 5IYBD 2HYMB 4D2BA 4GBYA 1PV6A 4U4VA 1IJZA 3FKID 1V7MV 4WRLB 1RHGA 2B8ZA 1B5LA 1AXIA 4LEPA 3NCFA 3HOWD 3MZGA 1PV7A 4IKYA 5C65A 4A3LD 5A2OA 3PIWA 5FLMD 3D85C 1PW4A 2ILKA 1M49A 1Y6ML 4W6VA 4U4TA 2Q7NB 3QWRB 3H3VE 2B8YA 3HOYD 4ZW9A 5FUCA 4A3ED 1D9GA 3EJJA 3DLQI 4U4WA 3NCCA 2OQPA 1CD9A 1M4BA 3BPLA 1A22A 1INRA 3UF5A 3DI3A 2XQBA 4TPJA 1Z92A 3UX9A 1V7NV 1M4CA 5EQIA 3IRHA 3I4ND 2KZ1A 4A3DD 1BUYA 3I4MD 1M47A 2B91A 2B63D 4EXPA 3LB6B 1PY2A 1HZIA 4BY7D 2CYKA 1RFBA 3HOZD 2D48A 1QVNA 3HHCA 4YUEC 4ZYRA 4NI9A 4NN7A 4FA8E 1ITLA 1CNT1 5D6KA 5E4EA 3SE4B 2PSMA 1J7VL 1ILKA 4NN5A 1Y6KL 3QB7A 5KNHI 1PGRA 5D59A 4IKZA 1HWHA 5IP9D 4BXXD 4XNIA 1P9MB 1Y6NL 3LB6A 3INKC 3TGXB 4BBSD 1I1RB 3NCBA 3HOVD 5LQBA 4PS4A 1HULA 3L5XA 5IYCD 3BESL 1EMRA 3QT2C 2O26A 3HOUD 4D2CA 2JA7D 1M4AA 2V8NA 4JR9A 3PO2D 1EKUA 4Z5RD 1AX8A 2CFQA 2B5IA 1GA3A 4IKXA 1BGCA 2XUTA 3BPNA 4ZWCA 1LKIA 4OAAA 2B8XA 1RW5A 4I77Z 1CN4C 3G9VB 1BCNA 5D58A 3D87A 4Q65A 4A3MD 1KF9A 4YDYI 5A2NA 5IP7D 2Q14A 4RS1A 3VA2A 4O6KA 1LQSL 1LK3A 2E9WC 4A3CD 3NPZA 4GRWA 1IL6A 1ITMA 3OQ3A 3OG6A 1JLIA 1D9CA 5IYDD 4PYPA 4A3KD 4ZS7A 5C4XD 4ZWBA 2CFPA 1YKBA 4EXNA 2R92D 5C7XA 2C35A 3G6DA 4UVMA 1BP3A 5EQGA 1F6FA 4NKQC 4A3JD 4A3ID 3PIVA 5GXBA 4DKEA 1NBPA 2IL6A 4IU8A 4MHLA 2LAGA 4A3GD 2Q98A 2L3YA 3HOXD 4IKVA 1IRLA 1F45B 3UEZE 2JA6D 4IKWA 4DKFA 3O7QA 2JA8D 2Z3QA 4A3BD 2Y5YA 3OG4A 4LDSA 2O27A 1EVSA 5D22A 3O7PA 1A7MA 1AU1A 1RCBA 5EQHA 1HGUA 1PVHB 3L5WI 1ITFA 4JREA 1BGDA 4GS7A 2VUMD 4IU9A 4LRLA 3N0PA 4NN6A 4A3FD 5D71A 4APSA 1BBNA 1HIKA 1IARA 3DI2A 4GBZA 5C3ED 3H0GD 5D70A 2GMFA 1Y1VD 1SCFA
chains in the Genus database with same CATH topology
3WDOA 4D2DA 4IKWA 4JA3A 2CFQA 4OH3A 5EQGA 5EQHA 3O7QA 4IKXA 4W6VA 4JREA 2XUTA 5GXBA 4U4TA 5D59A 4ZWCA 4IKZA 4TPHA 4TPJA 4ZYRA 4OAAA 4IU9A 4YBQA 4LEPA 1PV7A 4GC0A 4XNIA 5D6KA 4D2CA 5EQIA 4IKYA 5C65A 4GBZA 2V8NA 2Y5YA 4IU8A 4PYPA 4JR9A 5D58A 4TPGA 4LDSA 4Q65A 2CFPA 4ZWBA 4ZW9A 5A2OA 4APSA 5A2NA 4U4WA 4QIQA 1PW4A 3O7PA 4D2BA 4GBYA 4J05A 4YB9D 4IKVA 1PV6A 4U4VA 4XNJA 4UVMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WDO A;  4D2D A;  4IKW A;  4JA3 A;  2CFQ A;  4OH3 A;  5EQG A;  5EQH A;  3O7Q A;  4IKX A;  4W6V A;  4JRE A;  2XUT A;  5GXB A;  4U4T A;  5D59 A;  4ZWC A;  4IKZ A;  4TPH A;  4TPJ A;  4ZYR A;  4OAA A;  4IU9 A;  4YBQ A;  4LEP A;  1PV7 A;  4GC0 A;  4XNI A;  5D6K A;  4D2C A;  5EQI A;  4IKY A;  5C65 A;  4GBZ A;  2V8N A;  2Y5Y A;  4IU8 A;  4PYP A;  4JR9 A;  5D58 A;  4TPG A;  4LDS A;  4Q65 A;  2CFP A;  4ZWB A;  4ZW9 A;  5A2O A;  4APS A;  5A2N A;  4U4W A;  4QIQ A;  1PW4 A;  3O7P A;  4D2B A;  4GBY A;  4J05 A;  4YB9 D;  4IKV A;  1PV6 A;  4U4V A;  4XNJ A;  4UVM A; 
#chains in the Genus database with same CATH topology
 4D2D A;  1EXZ A;  1BGE A;  4CNI C;  2JA5 D;  3QAZ A;  4TPH A;  4BY1 D;  3WCY I;  1FG9 A;  3DGC L;  2ERJ D;  5C44 D;  4TPG A;  4A93 D;  3D48 P;  5L6Y C;  3DUH C;  4DKD A;  3SE3 B;  4YB9 D;  3AYH A;  4XNJ A;  2LMS A;  3WDO A;  2B90 A;  2R93 D;  3PO3 D;  1HUW A;  5FHX A;  1ITI A;  3BPO A;  2Z3R A;  4DKC A;  1HIJ A;  4NEM A;  1EER A;  2O6I A;  4QIQ A;  1Y14 A;  3NCE A;  4JA3 A;  4YPG C;  1GNC A;  1ETE A;  1WU3 I;  1Y1W D;  2R7Z D;  1WCM D;  3HHR A;  3S9D A;  1M4R A;  1M48 A;  4J05 A;  3UF2 A;  1Z7C A;  3EW3 A;  4OH3 A;  4ZF7 A;  3Q1S I;  1IK0 A;  5D72 A;  4NI7 A;  1CYL A;  1VLK A;  5D28 B;  4GC0 A;  1HWG A;  2B8U A;  1ALU A;  4NEJ A;  4BBR D;  1PW6 A;  4X51 A;  3HMX B;  1FYH A;  1CSG A;  2H24 A;  4O9H A;  3QB1 A;  4YQX A;  2INT A;  4YBQ A;  2D9Q A;  5TS9 A;  1N1F A;  4J4L C;  3B5K A;  2L3O A;  3N06 A;  4DOH A;  5IYB D;  2HYM B;  4D2B A;  4GBY A;  1PV6 A;  4U4V A;  1IJZ A;  3FKI D;  1V7M V;  4WRL B;  1RHG A;  2B8Z A;  1B5L A;  1AXI A;  4LEP A;  3NCF A;  3HOW D;  3MZG A;  1PV7 A;  4IKY A;  5C65 A;  4A3L D;  5A2O A;  3PIW A;  5FLM D;  3D85 C;  1PW4 A;  2ILK A;  1M49 A;  1Y6M L;  4W6V A;  4U4T A;  2Q7N B;  3QWR B;  3H3V E;  2B8Y A;  3HOY D;  4ZW9 A;  5FUC A;  4A3E D;  1D9G A;  3EJJ A;  3DLQ I;  4U4W A;  3NCC A;  2OQP A;  1CD9 A;  1M4B A;  3BPL A;  1A22 A;  1INR A;  3UF5 A;  3DI3 A;  2XQB A;  4TPJ A;  1Z92 A;  3UX9 A;  1V7N V;  1M4C A;  5EQI A;  3IRH A;  3I4N D;  2KZ1 A;  4A3D D;  1BUY A;  3I4M D;  1M47 A;  2B91 A;  2B63 D;  4EXP A;  3LB6 B;  1PY2 A;  1HZI A;  4BY7 D;  2CYK A;  1RFB A;  3HOZ D;  2D48 A;  1QVN A;  3HHC A;  4YUE C;  4ZYR A;  4NI9 A;  4NN7 A;  4FA8 E;  1ITL A;  1CNT 1;  5D6K A;  5E4E A;  3SE4 B;  2PSM A;  1J7V L;  1ILK A;  4NN5 A;  1Y6K L;  3QB7 A;  5KNH I;  1PGR A;  5D59 A;  4IKZ A;  1HWH A;  5IP9 D;  4BXX D;  4XNI A;  1P9M B;  1Y6N L;  3LB6 A;  3INK C;  3TGX B;  4BBS D;  1I1R B;  3NCB A;  3HOV D;  5LQB A;  4PS4 A;  1HUL A;  3L5X A;  5IYC D;  3BES L;  1EMR A;  3QT2 C;  2O26 A;  3HOU D;  4D2C A;  2JA7 D;  1M4A A;  2V8N A;  4JR9 A;  3PO2 D;  1EKU A;  4Z5R D;  1AX8 A;  2CFQ A;  2B5I A;  1GA3 A;  4IKX A;  1BGC A;  2XUT A;  3BPN A;  4ZWC A;  1LKI A;  4OAA A;  2B8X A;  1RW5 A;  4I77 Z;  1CN4 C;  3G9V B;  1BCN A;  5D58 A;  3D87 A;  4Q65 A;  4A3M D;  1KF9 A;  4YDY I;  5A2N A;  5IP7 D;  2Q14 A;  4RS1 A;  3VA2 A;  4O6K A;  1LQS L;  1LK3 A;  2E9W C;  4A3C D;  3NPZ A;  4GRW A;  1IL6 A;  1ITM A;  3OQ3 A;  3OG6 A;  1JLI A;  1D9C A;  5IYD D;  4PYP A;  4A3K D;  4ZS7 A;  5C4X D;  4ZWB A;  2CFP A;  1YKB A;  4EXN A;  2R92 D;  5C7X A;  2C35 A;  3G6D A;  4UVM A;  1BP3 A;  5EQG A;  1F6F A;  4NKQ C;  4A3J D;  4A3I D;  3PIV A;  5GXB A;  4DKE A;  1NBP A;  2IL6 A;  4IU8 A;  4MHL A;  2LAG A;  4A3G D;  2Q98 A;  2L3Y A;  3HOX D;  4IKV A;  1IRL A;  1F45 B;  3UEZ E;  2JA6 D;  4IKW A;  4DKF A;  3O7Q A;  2JA8 D;  2Z3Q A;  4A3B D;  2Y5Y A;  3OG4 A;  4LDS A;  2O27 A;  1EVS A;  5D22 A;  3O7P A;  1A7M A;  1AU1 A;  1RCB A;  5EQH A;  1HGU A;  1PVH B;  3L5W I;  1ITF A;  4JRE A;  1BGD A;  4GS7 A;  2VUM D;  4IU9 A;  4LRL A;  3N0P A;  4NN6 A;  4A3F D;  5D71 A;  4APS A;  1BBN A;  1HIK A;  1IAR A;  3DI2 A;  4GBZ A;  5C3E D;  3H0G D;  5D70 A;  2GMF A;  1Y1V D;  1SCF A; 
#chains in the Genus database with same CATH homology
 3WDO A;  4D2D A;  4IKW A;  4JA3 A;  2CFQ A;  4OH3 A;  5EQG A;  5EQH A;  3O7Q A;  4IKX A;  4W6V A;  4JRE A;  2XUT A;  5GXB A;  4U4T A;  5D59 A;  4ZWC A;  4IKZ A;  4TPH A;  4TPJ A;  4ZYR A;  4OAA A;  4IU9 A;  4YBQ A;  4LEP A;  1PV7 A;  4GC0 A;  4XNI A;  5D6K A;  4D2C A;  5EQI A;  4IKY A;  5C65 A;  4GBZ A;  2V8N A;  2Y5Y A;  4IU8 A;  4PYP A;  4JR9 A;  5D58 A;  4TPG A;  4LDS A;  4Q65 A;  2CFP A;  4ZWB A;  4ZW9 A;  5A2O A;  4APS A;  5A2N A;  4U4W A;  4QIQ A;  1PW4 A;  3O7P A;  4D2B A;  4GBY A;  4J05 A;  4YB9 D;  4IKV A;  1PV6 A;  4U4V A;  4XNJ A;  4UVM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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