4A93D

Rna polymerase ii elongation complex containing a cpd lesion
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
219
structure length
178
Chain Sequence
VSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
publication title Mechanism of Translesion Transcription by RNA Polymerase II and its Role in Cellular Resistance to DNA Damage.
pubmed doi rcsb
total genus 49
structure length 178
sequence length 219
ec nomenclature
pdb deposition date 2011-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 4a93D02
2JA5D 4A3JD 4BBRD 4A93D 3HOZD 3HOVD 1Y14A 2JA6D 4A3DD 3H0GD 3HOWD 1WCMD 4A3ID 5FLMD 3I4ND 4A3GD 4BY1D 3HOUD 1Y1VD 3PO2D 4A3FD 1Y1WD 2B63D 5IP7D 4A3MD 4BBSD 4A3BD 4A3CD 4BXXD 2R93D 2R92D 4A3LD 5IP9D 2VUMD 4A3ED 2R7ZD 5IYBD 4BY7D 2JA8D 5C44D 2JA7D 5IYCD 4A3KD 3HOXD 5IYDD 5C4XD 3PO3D 3FKID 5C3ED 2C35A 3H3VE 3AYHA 3HOYD 3I4MD
chains in the Genus database with same CATH superfamily
1SCFA 4RS1A 3L5XA 4IU8A 2XQBA 2Q14A 4X51A 3BESL 5EQHA 4DKDA 4U4WA 3S9DA 2CFPA 5A2OA 3NCFA 3D85C 1BBNA 1IL6A 4O6KA 4LRLA 1PW6A 2Z3QA 1J7VL 4OH3A 1KF9A 1EXZA 4XNIA 1INRA 4IKYA 2JA8D 1QVNA 3DGCL 5D70A 3UF5A 3AYHA 5KNHI 4PS4A 3H0GD 2ERJD 3INKC 4W6VA 2B90A 1F45B 3OQ3A 5C65A 2LMSA 5IP7D 3SE3B 5A2NA 1IRLA 2JA7D 1N1FA 1V7NV 5C4XD 2GMFA 1HWGA 3UF2A 1CSGA 1F6FA 1B5LA 4YB9D 4A3DD 5TS9A 3PIVA 4NN6A 1IARA 1M49A 5D28B 5GXBA 5L6YC 4A3LD 1ITIA 2B8YA 2VUMD 4DKCA 4BY7D 3DI2A 1RW5A 4QIQA 5IYDD 5C3ED 1WU3I 5D59A 2Z3RA 1PV7A 4BBRD 1JLIA 2INTA 1WCMD 1HUWA 4A3GD 3WDOA 5D71A 2R92D 2ILKA 2XUTA 1D9CA 1D9GA 4DKFA 2CFQA 1HZIA 1EKUA 3DLQI 3G9VB 4YQXA 4IKVA 1NBPA 3I4ND 1V7MV 2HYMB 4IKXA 1BCNA 4NKQC 3MZGA 3L5WI 1ITMA 4NI9A 4EXNA 4J05A 4FA8E 5LQBA 4NI7A 4A93D 4PYPA 2B8XA 1ITLA 4J4LC 2IL6A 4U4VA 2L3OA 3PO2D 4OAAA 1AU1A 4A3MD 4MHLA 4GBYA 4GS7A 4LDSA 4ZF7A 4D2DA 3H3VE 2H24A 4CNIC 1HWHA 4LEPA 1PW4A 4D2CA 3QT2C 1VLKA 3NCEA 4NEMA 3Q1SI 5D6KA 3PIWA 1M4CA 4I77Z 3D87A 2B63D 1A7MA 4D2BA 2CYKA 1M47A 1RFBA 1PVHB 3FKID 2B91A 4JR9A 4ZW9A 5D58A 5EQGA 4IKZA 4IU9A 4YBQA 4DOHA 4TPJA 4IKWA 1I1RB 4TPGA 2Q98A 1LK3A 1Y6ML 3QB7A 5C44D 1IJZA 2O6IA 3NPZA 2V8NA 2B8UA 2KZ1A 1ILKA 3N06A 1EERA 3D48P 3LB6A 5EQIA 4ZYRA 4A3BD 2O27A 3QWRB 5IP9D 2R7ZD 3O7QA 5IYCD 3LB6B 4A3KD 5C7XA 4WRLB 1FYHA 4JREA 3HOYD 4XNJA 1HGUA 4YPGC 3EJJA 1AXIA 1PY2A 2JA5D 3HOZD 1EVSA 1Y14A 4ZWBA 3NCCA 3HHCA 2Y5YA 5E4EA 4EXPA 3SE4B 3HMXB 4NN7A 1CNT1 4U4TA 4ZS7A 1LQSL 3QAZA 3N0PA 1PGRA 1HIKA 3HOVD 1M4RA 2OQPA 3NCBA 5FUCA 4A3ID 4DKEA 1CN4C 5D22A 3BPOA 3UEZE 1M48A 3QB1A 4TPHA 1Y6NL 1ETEA 4BBSD 1ITFA 2R93D 2LAGA 5IYBD 1EMRA 1FG9A 2C35A 1ALUA 3HHRA 4UVMA 3HOWD 2E9WC 4NN5A 3HOUD 2Q7NB 3VA2A 3B5KA 2B8ZA 1CD9A 2B5IA 4NEJA 3HOXD 1HIJA 3WCYI 2O26A 1M4BA 3EW3A 3DUHC 4A3JD 4YDYI 2JA6D 4GBZA 5FLMD 1CYLA 1Z92A 1GA3A 1BP3A 4Q65A 4BXXD 4A3CD 1IK0A 1M4AA 4A3ED 1PV6A 3BPNA 1P9MB 3O7PA 3PO3D 3TGXB 3I4MD 3DI3A 1BGEA 1BGCA 3BPLA 2D9QA 1BGDA 1RHGA 1RCBA 4GC0A 1Y1VD 4A3FD 1BUYA 3IRHA 1YKBA 3UX9A 4Z5RD 2L3YA 1A22A 3OG6A 1AX8A 1GNCA 3G6DA 4YUEC 1Y6KL 1HULA 3OG4A 1LKIA 1Z7CA 5FHXA 4BY1D 1Y1WD 4GRWA 5D72A 4O9HA 2D48A 4ZWCA 4JA3A 2PSMA 4APSA
chains in the Genus database with same CATH topology
4BBRD 3HOWD 1JLIA 2INTA 1WCMD 2E9WC 1SCFA 1HUWA 4NN5A 3L5XA 4RS1A 4DOHA 4A3GD 3HOUD 1I1RB 2Q7NB 2XQBA 2Q98A 2Q14A 4X51A 1LK3A 5D71A 3BESL 3VA2A 2R92D 3B5KA 1Y6ML 2ILKA 2B8ZA 4DKDA 3S9DA 1CD9A 3QB7A 5C44D 1IJZA 2B5IA 2O6IA 4NEJA 3HOXD 3NCFA 1HIJA 3WCYI 1D9CA 3D85C 1BBNA 1D9GA 4DKFA 2O26A 3NPZA 1HZIA 1M4BA 3EW3A 1EKUA 1IL6A 2B8UA 4LRLA 4O6KA 3DUHC 2KZ1A 1ILKA 4YDYI 4A3JD 1PW6A 3N06A 3DLQI 3G9VB 1EERA 2JA6D 4YQXA 3D48P 1NBPA 3LB6A 5FLMD 1CYLA 2Z3QA 3I4ND 1Z92A 1GA3A 1BP3A 1J7VL 1V7MV 2HYMB 4BXXD 4A3BD 2O27A 4A3CD 1IK0A 1BCNA 3QWRB 1KF9A 4NKQC 3MZGA 5IP9D 1M4AA 3L5WI 1EXZA 1ITMA 4A3ED 2R7ZD 1INRA 2JA8D 1QVNA 3DGCL 5IYCD 3BPNA 3LB6B 4A3KD 1P9MB 5D70A 5C7XA 3UF5A 4NI9A 3PO3D 4WRLB 4EXNA 1FYHA 3TGXB 3AYHA 3HOYD 1HGUA 4YPGC 3I4MD 3DI3A 3EJJA 1BGEA 1AXIA 4FA8E 1PY2A 5LQBA 2JA5D 5KNHI 4NI7A 4A93D 4PS4A 3HOZD 1EVSA 1Y14A 1BGCA 3BPLA 3NCCA 3H0GD 3HHCA 2B8XA 1ITLA 2D9QA 1BGDA 2ERJD 5E4EA 4J4LC 2IL6A 1RHGA 4EXPA 3INKC 2B90A 1RCBA 1F45B 1Y1VD 2L3OA 3PO2D 4A3FD 1BUYA 3IRHA 3OQ3A 1AU1A 2LMSA 1YKBA 3HMXB 5IP7D 4NN7A 3SE4B 3SE3B 3UX9A 4A3MD 1CNT1 4MHLA 4ZS7A 4GS7A 4Z5RD 1IRLA 2JA7D 4ZF7A 2L3YA 1LQSL 1N1FA 1A22A 1V7NV 3QAZA 5C4XD 2GMFA 3OG6A 3N0PA 1HWGA 3H3VE 1AX8A 2H24A 4CNIC 3UF2A 1PGRA 1CSGA 1F6FA 1HWHA 1GNCA 1B5LA 3G6DA 1HIKA 4YUEC 1Y6KL 3HOVD 4A3DD 1M4RA 2OQPA 3QT2C 1VLKA 3NCBA 3NCEA 5FUCA 1HULA 3OG4A 1LKIA 5TS9A 1Z7CA 4NEMA 4DKEA 3Q1SI 1CN4C 3PIVA 4NN6A 5D22A 5FHXA 3BPOA 3PIWA 4BY1D 1IARA 1M4CA 1M49A 4I77Z 3UEZE 3D87A 5D28B 4GRWA 5D72A 1M48A 3QB1A 4O9HA 1Y1WD 2B63D 1Y6NL 2D48A 1ETEA 5L6YC 4BBSD 1A7MA 1ITFA 2R93D 4A3LD 2LAGA 1ITIA 2B8YA 2VUMD 2CYKA 1M47A 4DKCA 5IYBD 4BY7D 3DI2A 1RW5A 2PSMA 1EMRA 4A3ID 1RFBA 1PVHB 5IYDD 1FG9A 3FKID 2B91A 2C35A 5C3ED 1WU3I 2Z3RA 1ALUA 3HHRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA5 D;  4A3J D;  4BBR D;  4A93 D;  3HOZ D;  3HOV D;  1Y14 A;  2JA6 D;  4A3D D;  3H0G D;  3HOW D;  1WCM D;  4A3I D;  5FLM D;  3I4N D;  4A3G D;  4BY1 D;  3HOU D;  1Y1V D;  3PO2 D;  4A3F D;  1Y1W D;  2B63 D;  5IP7 D;  4A3M D;  4BBS D;  4A3B D;  4A3C D;  4BXX D;  2R93 D;  2R92 D;  4A3L D;  5IP9 D;  2VUM D;  4A3E D;  2R7Z D;  5IYB D;  4BY7 D;  2JA8 D;  5C44 D;  2JA7 D;  5IYC D;  4A3K D;  3HOX D;  5IYD D;  5C4X D;  3PO3 D;  3FKI D;  5C3E D;  2C35 A;  3H3V E;  3AYH A;  3HOY D;  3I4M D; 
#chains in the Genus database with same CATH topology
 1SCF A;  4RS1 A;  3L5X A;  4IU8 A;  2XQB A;  2Q14 A;  4X51 A;  3BES L;  5EQH A;  4DKD A;  4U4W A;  3S9D A;  2CFP A;  5A2O A;  3NCF A;  3D85 C;  1BBN A;  1IL6 A;  4O6K A;  4LRL A;  1PW6 A;  2Z3Q A;  1J7V L;  4OH3 A;  1KF9 A;  1EXZ A;  4XNI A;  1INR A;  4IKY A;  2JA8 D;  1QVN A;  3DGC L;  5D70 A;  3UF5 A;  3AYH A;  5KNH I;  4PS4 A;  3H0G D;  2ERJ D;  3INK C;  4W6V A;  2B90 A;  1F45 B;  3OQ3 A;  5C65 A;  2LMS A;  5IP7 D;  3SE3 B;  5A2N A;  1IRL A;  2JA7 D;  1N1F A;  1V7N V;  5C4X D;  2GMF A;  1HWG A;  3UF2 A;  1CSG A;  1F6F A;  1B5L A;  4YB9 D;  4A3D D;  5TS9 A;  3PIV A;  4NN6 A;  1IAR A;  1M49 A;  5D28 B;  5GXB A;  5L6Y C;  4A3L D;  1ITI A;  2B8Y A;  2VUM D;  4DKC A;  4BY7 D;  3DI2 A;  1RW5 A;  4QIQ A;  5IYD D;  5C3E D;  1WU3 I;  5D59 A;  2Z3R A;  1PV7 A;  4BBR D;  1JLI A;  2INT A;  1WCM D;  1HUW A;  4A3G D;  3WDO A;  5D71 A;  2R92 D;  2ILK A;  2XUT A;  1D9C A;  1D9G A;  4DKF A;  2CFQ A;  1HZI A;  1EKU A;  3DLQ I;  3G9V B;  4YQX A;  4IKV A;  1NBP A;  3I4N D;  1V7M V;  2HYM B;  4IKX A;  1BCN A;  4NKQ C;  3MZG A;  3L5W I;  1ITM A;  4NI9 A;  4EXN A;  4J05 A;  4FA8 E;  5LQB A;  4NI7 A;  4A93 D;  4PYP A;  2B8X A;  1ITL A;  4J4L C;  2IL6 A;  4U4V A;  2L3O A;  3PO2 D;  4OAA A;  1AU1 A;  4A3M D;  4MHL A;  4GBY A;  4GS7 A;  4LDS A;  4ZF7 A;  4D2D A;  3H3V E;  2H24 A;  4CNI C;  1HWH A;  4LEP A;  1PW4 A;  4D2C A;  3QT2 C;  1VLK A;  3NCE A;  4NEM A;  3Q1S I;  5D6K A;  3PIW A;  1M4C A;  4I77 Z;  3D87 A;  2B63 D;  1A7M A;  4D2B A;  2CYK A;  1M47 A;  1RFB A;  1PVH B;  3FKI D;  2B91 A;  4JR9 A;  4ZW9 A;  5D58 A;  5EQG A;  4IKZ A;  4IU9 A;  4YBQ A;  4DOH A;  4TPJ A;  4IKW A;  1I1R B;  4TPG A;  2Q98 A;  1LK3 A;  1Y6M L;  3QB7 A;  5C44 D;  1IJZ A;  2O6I A;  3NPZ A;  2V8N A;  2B8U A;  2KZ1 A;  1ILK A;  3N06 A;  1EER A;  3D48 P;  3LB6 A;  5EQI A;  4ZYR A;  4A3B D;  2O27 A;  3QWR B;  5IP9 D;  2R7Z D;  3O7Q A;  5IYC D;  3LB6 B;  4A3K D;  5C7X A;  4WRL B;  1FYH A;  4JRE A;  3HOY D;  4XNJ A;  1HGU A;  4YPG C;  3EJJ A;  1AXI A;  1PY2 A;  2JA5 D;  3HOZ D;  1EVS A;  1Y14 A;  4ZWB A;  3NCC A;  3HHC A;  2Y5Y A;  5E4E A;  4EXP A;  3SE4 B;  3HMX B;  4NN7 A;  1CNT 1;  4U4T A;  4ZS7 A;  1LQS L;  3QAZ A;  3N0P A;  1PGR A;  1HIK A;  3HOV D;  1M4R A;  2OQP A;  3NCB A;  5FUC A;  4A3I D;  4DKE A;  1CN4 C;  5D22 A;  3BPO A;  3UEZ E;  1M48 A;  3QB1 A;  4TPH A;  1Y6N L;  1ETE A;  4BBS D;  1ITF A;  2R93 D;  2LAG A;  5IYB D;  1EMR A;  1FG9 A;  2C35 A;  1ALU A;  3HHR A;  4UVM A;  3HOW D;  2E9W C;  4NN5 A;  3HOU D;  2Q7N B;  3VA2 A;  3B5K A;  2B8Z A;  1CD9 A;  2B5I A;  4NEJ A;  3HOX D;  1HIJ A;  3WCY I;  2O26 A;  1M4B A;  3EW3 A;  3DUH C;  4A3J D;  4YDY I;  2JA6 D;  4GBZ A;  5FLM D;  1CYL A;  1Z92 A;  1GA3 A;  1BP3 A;  4Q65 A;  4BXX D;  4A3C D;  1IK0 A;  1M4A A;  4A3E D;  1PV6 A;  3BPN A;  1P9M B;  3O7P A;  3PO3 D;  3TGX B;  3I4M D;  3DI3 A;  1BGE A;  1BGC A;  3BPL A;  2D9Q A;  1BGD A;  1RHG A;  1RCB A;  4GC0 A;  1Y1V D;  4A3F D;  1BUY A;  3IRH A;  1YKB A;  3UX9 A;  4Z5R D;  2L3Y A;  1A22 A;  3OG6 A;  1AX8 A;  1GNC A;  3G6D A;  4YUE C;  1Y6K L;  1HUL A;  3OG4 A;  1LKI A;  1Z7C A;  5FHX A;  4BY1 D;  1Y1W D;  4GRW A;  5D72 A;  4O9H A;  2D48 A;  4ZWC A;  4JA3 A;  2PSM A;  4APS A; 
#chains in the Genus database with same CATH homology
 4BBR D;  3HOW D;  1JLI A;  2INT A;  1WCM D;  2E9W C;  1SCF A;  1HUW A;  4NN5 A;  3L5X A;  4RS1 A;  4DOH A;  4A3G D;  3HOU D;  1I1R B;  2Q7N B;  2XQB A;  2Q98 A;  2Q14 A;  4X51 A;  1LK3 A;  5D71 A;  3BES L;  3VA2 A;  2R92 D;  3B5K A;  1Y6M L;  2ILK A;  2B8Z A;  4DKD A;  3S9D A;  1CD9 A;  3QB7 A;  5C44 D;  1IJZ A;  2B5I A;  2O6I A;  4NEJ A;  3HOX D;  3NCF A;  1HIJ A;  3WCY I;  1D9C A;  3D85 C;  1BBN A;  1D9G A;  4DKF A;  2O26 A;  3NPZ A;  1HZI A;  1M4B A;  3EW3 A;  1EKU A;  1IL6 A;  2B8U A;  4LRL A;  4O6K A;  3DUH C;  2KZ1 A;  1ILK A;  4YDY I;  4A3J D;  1PW6 A;  3N06 A;  3DLQ I;  3G9V B;  1EER A;  2JA6 D;  4YQX A;  3D48 P;  1NBP A;  3LB6 A;  5FLM D;  1CYL A;  2Z3Q A;  3I4N D;  1Z92 A;  1GA3 A;  1BP3 A;  1J7V L;  1V7M V;  2HYM B;  4BXX D;  4A3B D;  2O27 A;  4A3C D;  1IK0 A;  1BCN A;  3QWR B;  1KF9 A;  4NKQ C;  3MZG A;  5IP9 D;  1M4A A;  3L5W I;  1EXZ A;  1ITM A;  4A3E D;  2R7Z D;  1INR A;  2JA8 D;  1QVN A;  3DGC L;  5IYC D;  3BPN A;  3LB6 B;  4A3K D;  1P9M B;  5D70 A;  5C7X A;  3UF5 A;  4NI9 A;  3PO3 D;  4WRL B;  4EXN A;  1FYH A;  3TGX B;  3AYH A;  3HOY D;  1HGU A;  4YPG C;  3I4M D;  3DI3 A;  3EJJ A;  1BGE A;  1AXI A;  4FA8 E;  1PY2 A;  5LQB A;  2JA5 D;  5KNH I;  4NI7 A;  4A93 D;  4PS4 A;  3HOZ D;  1EVS A;  1Y14 A;  1BGC A;  3BPL A;  3NCC A;  3H0G D;  3HHC A;  2B8X A;  1ITL A;  2D9Q A;  1BGD A;  2ERJ D;  5E4E A;  4J4L C;  2IL6 A;  1RHG A;  4EXP A;  3INK C;  2B90 A;  1RCB A;  1F45 B;  1Y1V D;  2L3O A;  3PO2 D;  4A3F D;  1BUY A;  3IRH A;  3OQ3 A;  1AU1 A;  2LMS A;  1YKB A;  3HMX B;  5IP7 D;  4NN7 A;  3SE4 B;  3SE3 B;  3UX9 A;  4A3M D;  1CNT 1;  4MHL A;  4ZS7 A;  4GS7 A;  4Z5R D;  1IRL A;  2JA7 D;  4ZF7 A;  2L3Y A;  1LQS L;  1N1F A;  1A22 A;  1V7N V;  3QAZ A;  5C4X D;  2GMF A;  3OG6 A;  3N0P A;  1HWG A;  3H3V E;  1AX8 A;  2H24 A;  4CNI C;  3UF2 A;  1PGR A;  1CSG A;  1F6F A;  1HWH A;  1GNC A;  1B5L A;  3G6D A;  1HIK A;  4YUE C;  1Y6K L;  3HOV D;  4A3D D;  1M4R A;  2OQP A;  3QT2 C;  1VLK A;  3NCB A;  3NCE A;  5FUC A;  1HUL A;  3OG4 A;  1LKI A;  5TS9 A;  1Z7C A;  4NEM A;  4DKE A;  3Q1S I;  1CN4 C;  3PIV A;  4NN6 A;  5D22 A;  5FHX A;  3BPO A;  3PIW A;  4BY1 D;  1IAR A;  1M4C A;  1M49 A;  4I77 Z;  3UEZ E;  3D87 A;  5D28 B;  4GRW A;  5D72 A;  1M48 A;  3QB1 A;  4O9H A;  1Y1W D;  2B63 D;  1Y6N L;  2D48 A;  1ETE A;  5L6Y C;  4BBS D;  1A7M A;  1ITF A;  2R93 D;  4A3L D;  2LAG A;  1ITI A;  2B8Y A;  2VUM D;  2CYK A;  1M47 A;  4DKC A;  5IYB D;  4BY7 D;  3DI2 A;  1RW5 A;  2PSM A;  1EMR A;  4A3I D;  1RFB A;  1PVH B;  5IYD D;  1FG9 A;  3FKI D;  2B91 A;  2C35 A;  5C3E D;  1WU3 I;  2Z3R A;  1ALU A;  3HHR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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