4BY7D

Elongating rna polymerase ii-bye1 tld complex
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
218
structure length
178
Chain Sequence
STSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKETREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
publication title Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 49
structure length 178
sequence length 218
ec nomenclature
pdb deposition date 2013-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.40 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; Growth Hormone; Chain: A; 4by7D02
5IYBD 4A3ED 1Y1WD 2B63D 4A3MD 4A3DD 2JA7D 2JA5D 4A3FD 3H3VE 1Y14A 3PO3D 3HOZD 4BY1D 3HOWD 5C4XD 5IYDD 5IP9D 3I4MD 2R92D 2JA6D 2VUMD 4BBRD 4A3ID 4A3GD 3I4ND 4BY7D 3HOUD 2C35A 4A3JD 1Y1VD 3HOXD 3AYHA 2R93D 3HOYD 4BXXD 1WCMD 5IYCD 3PO2D 2JA8D 2R7ZD 5C3ED 5C44D 4A3LD 4BBSD 3H0GD 3HOVD 4A3CD 5FLMD 4A3BD 3FKID 4A93D 5IP7D 4A3KD
chains in the Genus database with same CATH superfamily
4JREA 1ITFA 3VA2A 3WCYI 4IKVA 4A3FD 3H3VE 1Y14A 1Z7CA 2L3YA 4FA8E 2ILKA 4JA3A 3L5WI 3HHCA 1BUYA 3NPZA 3BPLA 5D6KA 1M48A 1N1FA 1WCMD 2Z3QA 3QT2C 5C7XA 2LMSA 2IL6A 1GA3A 3HOVD 5FLMD 4A93D 3TGXB 1BCNA 5E4EA 2V8NA 4MHLA 4IKYA 3QB7A 4ZW9A 1ITIA 4U4WA 1EXZA 5FUCA 1RW5A 4U4TA 3I4ND 3N0PA 3HOUD 1PW6A 4GRWA 4O6KA 2R93D 1M47A 1ETEA 1CD9A 4ZF7A 4XNIA 4NN5A 3SE3B 4OH3A 3HHRA 2R92D 2KZ1A 4GBYA 4DKEA 1LKIA 1JLIA 1RHGA 3O7QA 4JR9A 4XNJA 4NEMA 3HMXB 4OAAA 1HIJA 3H0GD 4A3CD 1VLKA 3LB6A 4A3KD 1Y1WD 5TS9A 1EVSA 4TPHA 4TPJA 4LRLA 1PV7A 3HOXD 3AYHA 3HOYD 5EQHA 1IK0A 2H24A 1ITLA 4GC0A 4NN7A 5D28B 4ZS7A 4TPGA 5EQGA 4D2DA 3D87A 1EKUA 1J7VL 4YDYI 4GBZA 4YQXA 3BPNA 1WU3I 3PIVA 2PSMA 3OG6A 1CYLA 1M49A 3MZGA 4LEPA 1B5LA 5A2NA 4ZWCA 2LAGA 1AX8A 2O27A 5IP9D 1PVHB 1F6FA 4NI7A 1I1RB 4A3JD 2B91A 4D2BA 4PYPA 2D48A 4LDSA 4NKQC 1HZIA 4J4LC 1CSGA 1ILKA 4IKZA 2JA6D 5A2OA 3D48P 4YUEC 2Y5YA 3QWRB 2D9QA 3DUHC 4YBQA 3SE4B 3G9VB 2CYKA 1M4RA 2GMFA 3OQ3A 1AXIA 1BGEA 3DI2A 2ERJD 3NCBA 1INRA 1LQSL 4A3ED 2B8UA 5LQBA 3NCEA 2B90A 3DI3A 5GXBA 1BGDA 3NCFA 4QIQA 1PV6A 5D59A 2C35A 3EW3A 5IYCD 1QVNA 4IU9A 1BGCA 1SCFA 2B8XA 1FG9A 1Y6ML 5D72A 3PIWA 5C65A 3UF5A 1ALUA 3HOZD 1M4BA 5D22A 4A3ID 4GS7A 4DKFA 1EMRA 1CNT1 1HWHA 1AU1A 4X51A 4DKDA 4NN6A 4IKWA 4YB9D 1HULA 4EXPA 1CN4C 5C3ED 2Q7NB 3FKID 3UEZE 4D2CA 2O26A 1BP3A 2E9WC 5L6YC 2JA5D 4BY1D 5IYDD 1IL6A 3EJJA 4RS1A 1A7MA 2INTA 3B5KA 3D85C 4BXXD 1Y6NL 2L3OA 5C44D 5D70A 4A3BD 1D9CA 4I77Z 5D58A 4ZYRA 1RCBA 3DLQI 5IYBD 3BESL 4A3DD 2JA7D 4J05A 3G6DA 3LB6B 3NCCA 1PY2A 2CFQA 4O9HA 2HYMB 4EXNA 2CFPA 4BBSD 2OQPA 4ZWBA 1M4AA 4A3MD 3PO3D 4APSA 1PGRA 1KF9A 1ITMA 2VUMD 4NI9A 5KNHI 1GNCA 3L5XA 1IJZA 1V7MV 4DOHA 2B8ZA 1HGUA 2B63D 4YPGC 4UVMA 1RFBA 4U4VA 3BPOA 5FHXA 5IP7D 5EQIA 1PW4A 4W6VA 3QAZA 3HOWD 2Q98A 5C4XD 2Z3RA 2XUTA 1HUWA 4CNIC 5D71A 1Y1VD 4WRLB 3S9DA 3INKC 4IKXA 2R7ZD 1FYHA 1HWGA 4PS4A 3WDOA 3N06A 1NBPA 3O7PA 1YKBA 1M4CA 1IARA 2B8YA 4BBRD 3IRHA 1BBNA 1V7NV 4DKCA 3UX9A 1Z92A 1P9MB 2JA8D 1IRLA 3UF2A 1Y6KL 4IU8A 3QB1A 1EERA 1LK3A 3Q1SI 1HIKA 3OG4A 2O6IA 1A22A 2XQBA 3I4MD 4NEJA 1F45B 4A3GD 4Z5RD 3DGCL 4BY7D 4Q65A 2B5IA 1D9GA 3PO2D 2Q14A 4A3LD
chains in the Genus database with same CATH topology
5D72A 1ITFA 3VA2A 3PIWA 4ZS7A 3WCYI 2B63D 4YPGC 3UF5A 4A3FD 1ALUA 3H3VE 1Y14A 1Z7CA 1M4BA 2L3YA 4FA8E 3HOZD 2ILKA 3D87A 1RFBA 3L5WI 1EKUA 1J7VL 3HHCA 5D22A 4YDYI 4A3ID 1BUYA 4GS7A 4DKFA 1EMRA 3NPZA 3BPLA 4YQXA 3BPNA 1CNT1 1HWHA 1M48A 1WU3I 2PSMA 1AU1A 1N1FA 1WCMD 2Z3QA 3PIVA 3QT2C 3OG6A 4X51A 4DKDA 5C7XA 1M49A 2LMSA 3MZGA 4NN6A 1CYLA 1B5LA 1HULA 2IL6A 4EXPA 1CN4C 5C3ED 1GA3A 2Q7NB 3HOVD 5FLMD 3FKID 3BPOA 5FHXA 2O26A 3UEZE 4A93D 3TGXB 5IP7D 1BCNA 2LAGA 1BP3A 2E9WC 5E4EA 5L6YC 1AX8A 4MHLA 2JA5D 3QB7A 3QAZA 1ITIA 4BY1D 2Q98A 3HOWD 5C4XD 5IYDD 2O27A 5IP9D 2Z3RA 1PVHB 1EXZA 1IL6A 3EJJA 1F6FA 5FUCA 4NI7A 1RW5A 1HUWA 4RS1A 4CNIC 3I4ND 3N0PA 1A7MA 2INTA 3B5KA 1I1RB 5D71A 4A3JD 3HOUD 1PW6A 1Y1VD 2B91A 3D85C 4GRWA 4O6KA 2R93D 4BXXD 4WRLB 1Y6NL 3S9DA 2L3OA 3INKC 1M47A 2R7ZD 2D48A 1FYHA 5C44D 1ETEA 1CD9A 4ZF7A 5D70A 1HWGA 1D9CA 4PS4A 4A3BD 4I77Z 1RCBA 3DLQI 1NBPA 3N06A 4NKQC 5IYBD 1HZIA 4J4LC 3BESL 1CSGA 4NN5A 4A3DD 2JA7D 1ILKA 1YKBA 3SE3B 1M4CA 3G6DA 3HHRA 3LB6B 1IARA 2R92D 3NCCA 2B8YA 2JA6D 4BBRD 3IRHA 1PY2A 2KZ1A 3D48P 4YUEC 1BBNA 3QWRB 2D9QA 1LKIA 1V7NV 3DUHC 3SE4B 1JLIA 4DKEA 4DKCA 1RHGA 4O9HA 3UX9A 2HYMB 1Z92A 1P9MB 3G9VB 4NEMA 2CYKA 1M4RA 3HMXB 2GMFA 4EXNA 2JA8D 1HIJA 3OQ3A 4BBSD 1AXIA 1IRLA 3H0GD 3UF2A 1BGEA 1Y6KL 2OQPA 4A3CD 1VLKA 1M4AA 3DI2A 3LB6A 2ERJD 3QB1A 3NCBA 4A3KD 1INRA 1LQSL 4A3ED 1Y1WD 4A3MD 1EERA 2B8UA 5TS9A 1LK3A 1EVSA 3Q1SI 3PO3D 1HIKA 5LQBA 3OG4A 2O6IA 1PGRA 4LRLA 1A22A 2XQBA 1KF9A 2B90A 1ITMA 3NCEA 3DI3A 1F45B 4NEJA 2VUMD 3I4MD 4A3GD 4Z5RD 4NI9A 1BGDA 3NCFA 3DGCL 5KNHI 4BY7D 1GNCA 2C35A 3HOXD 3AYHA 3EW3A 2B5IA 3HOYD 3L5XA 1IJZA 5IYCD 1D9GA 1QVNA 3PO2D 1V7MV 2Q14A 4A3LD 1BGCA 1SCFA 2B8XA 4DOHA 1IK0A 1FG9A 2H24A 2B8ZA 1ITLA 4NN7A 1Y6ML 5D28B 1HGUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYB D;  4A3E D;  1Y1W D;  2B63 D;  4A3M D;  4A3D D;  2JA7 D;  2JA5 D;  4A3F D;  3H3V E;  1Y14 A;  3PO3 D;  3HOZ D;  4BY1 D;  3HOW D;  5C4X D;  5IYD D;  5IP9 D;  3I4M D;  2R92 D;  2JA6 D;  2VUM D;  4BBR D;  4A3I D;  4A3G D;  3I4N D;  4BY7 D;  3HOU D;  2C35 A;  4A3J D;  1Y1V D;  3HOX D;  3AYH A;  2R93 D;  3HOY D;  4BXX D;  1WCM D;  5IYC D;  3PO2 D;  2JA8 D;  2R7Z D;  5C3E D;  5C44 D;  4A3L D;  4BBS D;  3H0G D;  3HOV D;  4A3C D;  5FLM D;  4A3B D;  3FKI D;  4A93 D;  5IP7 D;  4A3K D; 
#chains in the Genus database with same CATH topology
 4JRE A;  1ITF A;  3VA2 A;  3WCY I;  4IKV A;  4A3F D;  3H3V E;  1Y14 A;  1Z7C A;  2L3Y A;  4FA8 E;  2ILK A;  4JA3 A;  3L5W I;  3HHC A;  1BUY A;  3NPZ A;  3BPL A;  5D6K A;  1M48 A;  1N1F A;  1WCM D;  2Z3Q A;  3QT2 C;  5C7X A;  2LMS A;  2IL6 A;  1GA3 A;  3HOV D;  5FLM D;  4A93 D;  3TGX B;  1BCN A;  5E4E A;  2V8N A;  4MHL A;  4IKY A;  3QB7 A;  4ZW9 A;  1ITI A;  4U4W A;  1EXZ A;  5FUC A;  1RW5 A;  4U4T A;  3I4N D;  3N0P A;  3HOU D;  1PW6 A;  4GRW A;  4O6K A;  2R93 D;  1M47 A;  1ETE A;  1CD9 A;  4ZF7 A;  4XNI A;  4NN5 A;  3SE3 B;  4OH3 A;  3HHR A;  2R92 D;  2KZ1 A;  4GBY A;  4DKE A;  1LKI A;  1JLI A;  1RHG A;  3O7Q A;  4JR9 A;  4XNJ A;  4NEM A;  3HMX B;  4OAA A;  1HIJ A;  3H0G D;  4A3C D;  1VLK A;  3LB6 A;  4A3K D;  1Y1W D;  5TS9 A;  1EVS A;  4TPH A;  4TPJ A;  4LRL A;  1PV7 A;  3HOX D;  3AYH A;  3HOY D;  5EQH A;  1IK0 A;  2H24 A;  1ITL A;  4GC0 A;  4NN7 A;  5D28 B;  4ZS7 A;  4TPG A;  5EQG A;  4D2D A;  3D87 A;  1EKU A;  1J7V L;  4YDY I;  4GBZ A;  4YQX A;  3BPN A;  1WU3 I;  3PIV A;  2PSM A;  3OG6 A;  1CYL A;  1M49 A;  3MZG A;  4LEP A;  1B5L A;  5A2N A;  4ZWC A;  2LAG A;  1AX8 A;  2O27 A;  5IP9 D;  1PVH B;  1F6F A;  4NI7 A;  1I1R B;  4A3J D;  2B91 A;  4D2B A;  4PYP A;  2D48 A;  4LDS A;  4NKQ C;  1HZI A;  4J4L C;  1CSG A;  1ILK A;  4IKZ A;  2JA6 D;  5A2O A;  3D48 P;  4YUE C;  2Y5Y A;  3QWR B;  2D9Q A;  3DUH C;  4YBQ A;  3SE4 B;  3G9V B;  2CYK A;  1M4R A;  2GMF A;  3OQ3 A;  1AXI A;  1BGE A;  3DI2 A;  2ERJ D;  3NCB A;  1INR A;  1LQS L;  4A3E D;  2B8U A;  5LQB A;  3NCE A;  2B90 A;  3DI3 A;  5GXB A;  1BGD A;  3NCF A;  4QIQ A;  1PV6 A;  5D59 A;  2C35 A;  3EW3 A;  5IYC D;  1QVN A;  4IU9 A;  1BGC A;  1SCF A;  2B8X A;  1FG9 A;  1Y6M L;  5D72 A;  3PIW A;  5C65 A;  3UF5 A;  1ALU A;  3HOZ D;  1M4B A;  5D22 A;  4A3I D;  4GS7 A;  4DKF A;  1EMR A;  1CNT 1;  1HWH A;  1AU1 A;  4X51 A;  4DKD A;  4NN6 A;  4IKW A;  4YB9 D;  1HUL A;  4EXP A;  1CN4 C;  5C3E D;  2Q7N B;  3FKI D;  3UEZ E;  4D2C A;  2O26 A;  1BP3 A;  2E9W C;  5L6Y C;  2JA5 D;  4BY1 D;  5IYD D;  1IL6 A;  3EJJ A;  4RS1 A;  1A7M A;  2INT A;  3B5K A;  3D85 C;  4BXX D;  1Y6N L;  2L3O A;  5C44 D;  5D70 A;  4A3B D;  1D9C A;  4I77 Z;  5D58 A;  4ZYR A;  1RCB A;  3DLQ I;  5IYB D;  3BES L;  4A3D D;  2JA7 D;  4J05 A;  3G6D A;  3LB6 B;  3NCC A;  1PY2 A;  2CFQ A;  4O9H A;  2HYM B;  4EXN A;  2CFP A;  4BBS D;  2OQP A;  4ZWB A;  1M4A A;  4A3M D;  3PO3 D;  4APS A;  1PGR A;  1KF9 A;  1ITM A;  2VUM D;  4NI9 A;  5KNH I;  1GNC A;  3L5X A;  1IJZ A;  1V7M V;  4DOH A;  2B8Z A;  1HGU A;  2B63 D;  4YPG C;  4UVM A;  1RFB A;  4U4V A;  3BPO A;  5FHX A;  5IP7 D;  5EQI A;  1PW4 A;  4W6V A;  3QAZ A;  3HOW D;  2Q98 A;  5C4X D;  2Z3R A;  2XUT A;  1HUW A;  4CNI C;  5D71 A;  1Y1V D;  4WRL B;  3S9D A;  3INK C;  4IKX A;  2R7Z D;  1FYH A;  1HWG A;  4PS4 A;  3WDO A;  3N06 A;  1NBP A;  3O7P A;  1YKB A;  1M4C A;  1IAR A;  2B8Y A;  4BBR D;  3IRH A;  1BBN A;  1V7N V;  4DKC A;  3UX9 A;  1Z92 A;  1P9M B;  2JA8 D;  1IRL A;  3UF2 A;  1Y6K L;  4IU8 A;  3QB1 A;  1EER A;  1LK3 A;  3Q1S I;  1HIK A;  3OG4 A;  2O6I A;  1A22 A;  2XQB A;  3I4M D;  4NEJ A;  1F45 B;  4A3G D;  4Z5R D;  3DGC L;  4BY7 D;  4Q65 A;  2B5I A;  1D9G A;  3PO2 D;  2Q14 A;  4A3L D; 
#chains in the Genus database with same CATH homology
 5D72 A;  1ITF A;  3VA2 A;  3PIW A;  4ZS7 A;  3WCY I;  2B63 D;  4YPG C;  3UF5 A;  4A3F D;  1ALU A;  3H3V E;  1Y14 A;  1Z7C A;  1M4B A;  2L3Y A;  4FA8 E;  3HOZ D;  2ILK A;  3D87 A;  1RFB A;  3L5W I;  1EKU A;  1J7V L;  3HHC A;  5D22 A;  4YDY I;  4A3I D;  1BUY A;  4GS7 A;  4DKF A;  1EMR A;  3NPZ A;  3BPL A;  4YQX A;  3BPN A;  1CNT 1;  1HWH A;  1M48 A;  1WU3 I;  2PSM A;  1AU1 A;  1N1F A;  1WCM D;  2Z3Q A;  3PIV A;  3QT2 C;  3OG6 A;  4X51 A;  4DKD A;  5C7X A;  1M49 A;  2LMS A;  3MZG A;  4NN6 A;  1CYL A;  1B5L A;  1HUL A;  2IL6 A;  4EXP A;  1CN4 C;  5C3E D;  1GA3 A;  2Q7N B;  3HOV D;  5FLM D;  3FKI D;  3BPO A;  5FHX A;  2O26 A;  3UEZ E;  4A93 D;  3TGX B;  5IP7 D;  1BCN A;  2LAG A;  1BP3 A;  2E9W C;  5E4E A;  5L6Y C;  1AX8 A;  4MHL A;  2JA5 D;  3QB7 A;  3QAZ A;  1ITI A;  4BY1 D;  2Q98 A;  3HOW D;  5C4X D;  5IYD D;  2O27 A;  5IP9 D;  2Z3R A;  1PVH B;  1EXZ A;  1IL6 A;  3EJJ A;  1F6F A;  5FUC A;  4NI7 A;  1RW5 A;  1HUW A;  4RS1 A;  4CNI C;  3I4N D;  3N0P A;  1A7M A;  2INT A;  3B5K A;  1I1R B;  5D71 A;  4A3J D;  3HOU D;  1PW6 A;  1Y1V D;  2B91 A;  3D85 C;  4GRW A;  4O6K A;  2R93 D;  4BXX D;  4WRL B;  1Y6N L;  3S9D A;  2L3O A;  3INK C;  1M47 A;  2R7Z D;  2D48 A;  1FYH A;  5C44 D;  1ETE A;  1CD9 A;  4ZF7 A;  5D70 A;  1HWG A;  1D9C A;  4PS4 A;  4A3B D;  4I77 Z;  1RCB A;  3DLQ I;  1NBP A;  3N06 A;  4NKQ C;  5IYB D;  1HZI A;  4J4L C;  3BES L;  1CSG A;  4NN5 A;  4A3D D;  2JA7 D;  1ILK A;  1YKB A;  3SE3 B;  1M4C A;  3G6D A;  3HHR A;  3LB6 B;  1IAR A;  2R92 D;  3NCC A;  2B8Y A;  2JA6 D;  4BBR D;  3IRH A;  1PY2 A;  2KZ1 A;  3D48 P;  4YUE C;  1BBN A;  3QWR B;  2D9Q A;  1LKI A;  1V7N V;  3DUH C;  3SE4 B;  1JLI A;  4DKE A;  4DKC A;  1RHG A;  4O9H A;  3UX9 A;  2HYM B;  1Z92 A;  1P9M B;  3G9V B;  4NEM A;  2CYK A;  1M4R A;  3HMX B;  2GMF A;  4EXN A;  2JA8 D;  1HIJ A;  3OQ3 A;  4BBS D;  1AXI A;  1IRL A;  3H0G D;  3UF2 A;  1BGE A;  1Y6K L;  2OQP A;  4A3C D;  1VLK A;  1M4A A;  3DI2 A;  3LB6 A;  2ERJ D;  3QB1 A;  3NCB A;  4A3K D;  1INR A;  1LQS L;  4A3E D;  1Y1W D;  4A3M D;  1EER A;  2B8U A;  5TS9 A;  1LK3 A;  1EVS A;  3Q1S I;  3PO3 D;  1HIK A;  5LQB A;  3OG4 A;  2O6I A;  1PGR A;  4LRL A;  1A22 A;  2XQB A;  1KF9 A;  2B90 A;  1ITM A;  3NCE A;  3DI3 A;  1F45 B;  4NEJ A;  2VUM D;  3I4M D;  4A3G D;  4Z5R D;  4NI9 A;  1BGD A;  3NCF A;  3DGC L;  5KNH I;  4BY7 D;  1GNC A;  2C35 A;  3HOX D;  3AYH A;  3EW3 A;  2B5I A;  3HOY D;  3L5X A;  1IJZ A;  5IYC D;  1D9G A;  1QVN A;  3PO2 D;  1V7M V;  2Q14 A;  4A3L D;  1BGC A;  1SCF A;  2B8X A;  4DOH A;  1IK0 A;  1FG9 A;  2H24 A;  2B8Z A;  1ITL A;  4NN7 A;  1Y6M L;  5D28 B;  1HGU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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