5A2O | Genus

Total Genus 149

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	149
sequence length	553
structure length	470
Chain Sequence	RPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPSGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLETLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Arabidopsis thaliana
publication title	Molecular Basis of Nitrate Uptake by the Plant Nitrate Transporter Nrt1.1. pubmed doi rcsb
molecule keywords	NITRATE TRANSPORTER 1.1
total genus	149
structure length	470
sequence length	553
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-05-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00854	PTR2	POT family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1250.20	Mainly Alpha	Up-down Bundle	Growth Hormone; Chain: A;	MFS general substrate transporter like domains	5a2oA00

1PW4A 5EQIA 4UVMA 4OH3A 5A2OA 4IKVA 4D2BA 4JA3A 4D2CA 4IKWA 5D6KA 4ZWBA 4GC0A 4APSA 4IKZA 4JR9A 4W6VA 4XNIA 5A2NA 4LDSA 4D2DA 4ZWCA 4ZW9A 3WDOA 2XUTA 4TPJA 2CFQA 2CFPA 1PV6A 4TPHA 4PYPA 5EQHA 4YB9D 1PV7A 4XNJA 4U4VA 5C65A 5GXBA 4IU9A 4IKXA 4TPGA 4JREA 5EQGA 4Q65A 4J05A 4U4TA 3O7QA 4ZYRA 2V8NA 4YBQA 2Y5YA 4IKYA 4GBYA 4GBZA 5D58A 4U4WA 5D59A 4OAAA 4IU8A 3O7PA 4QIQA 4LEPA
chains in the Genus database with same CATH superfamily

4UVMA 3VA2A 5IYBD 4D2BA 3L5WI 2O6IA 5D72A 4JR9A 1Y1VD 4X51A 4BY7D 4ZF7A 1RHGA 3UF5A 3NCFA 1A22A 4WRLB 1ITFA 1EVSA 4BBRD 3HOUD 1IJZA 4EXPA 2LAGA 1HWHA 4W6VA 5E4EA 2XUTA 1CSGA 4NI9A 3PO2D 3D87A 5D71A 1EERA 4A3JD 1Y1WD 1HGUA 3BPNA 5EQGA 3HOVD 4J05A 3D85C 4Z5RD 4A3MD 3FKID 3SE3B 5EQIA 2JA7D 2B63D 3DI2A 1FYHA 3B5KA 4NKQC 1HULA 3WCYI 4IKXA 5FHXA 1NBPA 4GRWA 1F6FA 4RS1A 5TS9A 3I4MD 4IU8A 3QT2C 1SCFA 4FA8E 2C35A 1IARA 1A7MA 1HZIA 4XNIA 2Q7NB 4YUEC 1BBNA 1B5LA 1F45B 1FG9A 4YB9D 3HOWD 1HWGA 3QWRB 1M49A 4YBQA 1LK3A 2JA6D 1EMRA 2O27A 1Y6KL 4NEJA 4IKWA 1ALUA 5D22A 3WDOA 2XQBA 3L5XA 1PY2A 5EQHA 5C65A 1LQSL 4JREA 4Q65A 4LEPA 1WCMD 3DLQI 3PO3D 1CYLA 4DKDA 2E9WC 1IL6A 4IKZA 1BCNA 1M48A 2CFQA 2CYKA 1CN4C 3NCBA 4U4VA 2R93D 4CNIC 1BGDA 5D58A 4NN5A 5D59A 5IP9D 1ILKA 1PGRA 1Z92A 2O26A 1IK0A 1M4RA 3MZGA 5IYDD 4GS7A 4A3ED 3N0PA 1BGEA 1V7NV 3O7PA 3SE4B 1M4AA 3DUHC 1PW6A 4NI7A 3NPZA 1AU1A 3QB7A 5LQBA 4XNJA 4DKCA 2Z3QA 1HUWA 1JLIA 3OG4A 1VLKA 2JA5D 1GNCA 3G9VB 1RW5A 1P9MB 1GA3A 1WU3I 4OH3A 4YPGC 3PIVA 4ZWBA 3INKC 2KZ1A 2B8YA 1YKBA 4PYPA 4NEMA 2R92D 4BXXD 3BPLA 1Y6ML 1D9GA 3S9DA 1BP3A 3BPOA 4MHLA 1M4CA 1ITLA 5FUCA 1RCBA 4ZWCA 3QB1A 2D48A 3HOYD 4NN7A 3IRHA 5IYCD 3EW3A 1D9CA 3N06A 4ZS7A 3I4ND 2INTA 1PW4A 1HIKA 1AXIA 4EXNA 4DKEA 1KF9A 4J4LC 4LDSA 2H24A 4D2DA 4ZW9A 3TGXB 4A3LD 4PS4A 1PV6A 4TPHA 2B90A 5GXBA 5KNHI 2B8XA 3O7QA 3QAZA 4GBZA 4O6KA 2B5IA 3UEZE 5C7XA 4IKVA 2LMSA 2R7ZD 5D6KA 4A3GD 5C4XD 4APSA 3D48P 4YQXA 4A3CD 3BESL 4A93D 3HHCA 1LKIA 2D9QA 4U4WA 4OAAA 3G6DA 3OQ3A 4A3FD 4A3ID 4BY1D 4JA3A 4BBSD 4GC0A 1Y14A 3AYHA 1J7VL 1M47A 2ILKA 4TPJA 1PV7A 1M4BA 4A3DD 3HHRA 2B91A 2GMFA 4ZYRA 2JA8D 3H3VE 3NCEA 2Z3RA 4DOHA 3HOXD 1AX8A 1INRA 2ERJD 1RFBA 3H0GD 4QIQA 4O9HA 2VUMD 5C3ED 3HMXB 5D70A 2B8ZA 3LB6B 1N1FA 3UX9A 5FLMD 4U4TA 2IL6A 4GBYA 3HOZD 1EKUA 1Z7CA 1BGCA 1HIJA 1ITMA 3OG6A 2OQPA 4LRLA 2CFPA 5D28B 3UF2A 3DI3A 1BUYA 4IU9A 1PVHB 2B8UA 4YDYI 1CNT1 2V8NA 2Y5YA 1ITIA 3DGCL 2Q98A 3EJJA 2HYMB 4I77Z 5A2OA 1QVNA 3Q1SI 1IRLA 4D2CA 5L6YC 5A2NA 4A3BD 1EXZA 2L3YA 2PSMA 4A3KD 1ETEA 1CD9A 1V7MV 5C44D 1I1RB 4TPGA 3LB6A 2Q14A 4DKFA 4IKYA 4NN6A 1Y6NL 5IP7D 3PIWA 2L3OA 3NCCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1PW4 A;  5EQI A;  4UVM A;  4OH3 A;  5A2O A;  4IKV A;  4D2B A;  4JA3 A;  4D2C A;  4IKW A;  5D6K A;  4ZWB A;  4GC0 A;  4APS A;  4IKZ A;  4JR9 A;  4W6V A;  4XNI A;  5A2N A;  4LDS A;  4D2D A;  4ZWC A;  4ZW9 A;  3WDO A;  2XUT A;  4TPJ A;  2CFQ A;  2CFP A;  1PV6 A;  4TPH A;  4PYP A;  5EQH A;  4YB9 D;  1PV7 A;  4XNJ A;  4U4V A;  5C65 A;  5GXB A;  4IU9 A;  4IKX A;  4TPG A;  4JRE A;  5EQG A;  4Q65 A;  4J05 A;  4U4T A;  3O7Q A;  4ZYR A;  2V8N A;  4YBQ A;  2Y5Y A;  4IKY A;  4GBY A;  4GBZ A;  5D58 A;  4U4W A;  5D59 A;  4OAA A;  4IU8 A;  3O7P A;  4QIQ A;  4LEP A; 
#chains in the Genus database with same CATH topology
 4UVM A;  3VA2 A;  5IYB D;  4D2B A;  3L5W I;  2O6I A;  5D72 A;  4JR9 A;  1Y1V D;  4X51 A;  4BY7 D;  4ZF7 A;  1RHG A;  3UF5 A;  3NCF A;  1A22 A;  4WRL B;  1ITF A;  1EVS A;  4BBR D;  3HOU D;  1IJZ A;  4EXP A;  2LAG A;  1HWH A;  4W6V A;  5E4E A;  2XUT A;  1CSG A;  4NI9 A;  3PO2 D;  3D87 A;  5D71 A;  1EER A;  4A3J D;  1Y1W D;  1HGU A;  3BPN A;  5EQG A;  3HOV D;  4J05 A;  3D85 C;  4Z5R D;  4A3M D;  3FKI D;  3SE3 B;  5EQI A;  2JA7 D;  2B63 D;  3DI2 A;  1FYH A;  3B5K A;  4NKQ C;  1HUL A;  3WCY I;  4IKX A;  5FHX A;  1NBP A;  4GRW A;  1F6F A;  4RS1 A;  5TS9 A;  3I4M D;  4IU8 A;  3QT2 C;  1SCF A;  4FA8 E;  2C35 A;  1IAR A;  1A7M A;  1HZI A;  4XNI A;  2Q7N B;  4YUE C;  1BBN A;  1B5L A;  1F45 B;  1FG9 A;  4YB9 D;  3HOW D;  1HWG A;  3QWR B;  1M49 A;  4YBQ A;  1LK3 A;  2JA6 D;  1EMR A;  2O27 A;  1Y6K L;  4NEJ A;  4IKW A;  1ALU A;  5D22 A;  3WDO A;  2XQB A;  3L5X A;  1PY2 A;  5EQH A;  5C65 A;  1LQS L;  4JRE A;  4Q65 A;  4LEP A;  1WCM D;  3DLQ I;  3PO3 D;  1CYL A;  4DKD A;  2E9W C;  1IL6 A;  4IKZ A;  1BCN A;  1M48 A;  2CFQ A;  2CYK A;  1CN4 C;  3NCB A;  4U4V A;  2R93 D;  4CNI C;  1BGD A;  5D58 A;  4NN5 A;  5D59 A;  5IP9 D;  1ILK A;  1PGR A;  1Z92 A;  2O26 A;  1IK0 A;  1M4R A;  3MZG A;  5IYD D;  4GS7 A;  4A3E D;  3N0P A;  1BGE A;  1V7N V;  3O7P A;  3SE4 B;  1M4A A;  3DUH C;  1PW6 A;  4NI7 A;  3NPZ A;  1AU1 A;  3QB7 A;  5LQB A;  4XNJ A;  4DKC A;  2Z3Q A;  1HUW A;  1JLI A;  3OG4 A;  1VLK A;  2JA5 D;  1GNC A;  3G9V B;  1RW5 A;  1P9M B;  1GA3 A;  1WU3 I;  4OH3 A;  4YPG C;  3PIV A;  4ZWB A;  3INK C;  2KZ1 A;  2B8Y A;  1YKB A;  4PYP A;  4NEM A;  2R92 D;  4BXX D;  3BPL A;  1Y6M L;  1D9G A;  3S9D A;  1BP3 A;  3BPO A;  4MHL A;  1M4C A;  1ITL A;  5FUC A;  1RCB A;  4ZWC A;  3QB1 A;  2D48 A;  3HOY D;  4NN7 A;  3IRH A;  5IYC D;  3EW3 A;  1D9C A;  3N06 A;  4ZS7 A;  3I4N D;  2INT A;  1PW4 A;  1HIK A;  1AXI A;  4EXN A;  4DKE A;  1KF9 A;  4J4L C;  4LDS A;  2H24 A;  4D2D A;  4ZW9 A;  3TGX B;  4A3L D;  4PS4 A;  1PV6 A;  4TPH A;  2B90 A;  5GXB A;  5KNH I;  2B8X A;  3O7Q A;  3QAZ A;  4GBZ A;  4O6K A;  2B5I A;  3UEZ E;  5C7X A;  4IKV A;  2LMS A;  2R7Z D;  5D6K A;  4A3G D;  5C4X D;  4APS A;  3D48 P;  4YQX A;  4A3C D;  3BES L;  4A93 D;  3HHC A;  1LKI A;  2D9Q A;  4U4W A;  4OAA A;  3G6D A;  3OQ3 A;  4A3F D;  4A3I D;  4BY1 D;  4JA3 A;  4BBS D;  4GC0 A;  1Y14 A;  3AYH A;  1J7V L;  1M47 A;  2ILK A;  4TPJ A;  1PV7 A;  1M4B A;  4A3D D;  3HHR A;  2B91 A;  2GMF A;  4ZYR A;  2JA8 D;  3H3V E;  3NCE A;  2Z3R A;  4DOH A;  3HOX D;  1AX8 A;  1INR A;  2ERJ D;  1RFB A;  3H0G D;  4QIQ A;  4O9H A;  2VUM D;  5C3E D;  3HMX B;  5D70 A;  2B8Z A;  3LB6 B;  1N1F A;  3UX9 A;  5FLM D;  4U4T A;  2IL6 A;  4GBY A;  3HOZ D;  1EKU A;  1Z7C A;  1BGC A;  1HIJ A;  1ITM A;  3OG6 A;  2OQP A;  4LRL A;  2CFP A;  5D28 B;  3UF2 A;  3DI3 A;  1BUY A;  4IU9 A;  1PVH B;  2B8U A;  4YDY I;  1CNT 1;  2V8N A;  2Y5Y A;  1ITI A;  3DGC L;  2Q98 A;  3EJJ A;  2HYM B;  4I77 Z;  5A2O A;  1QVN A;  3Q1S I;  1IRL A;  4D2C A;  5L6Y C;  5A2N A;  4A3B D;  1EXZ A;  2L3Y A;  2PSM A;  4A3K D;  1ETE A;  1CD9 A;  1V7M V;  5C44 D;  1I1R B;  4TPG A;  3LB6 A;  2Q14 A;  4DKF A;  4IKY A;  4NN6 A;  1Y6N L;  5IP7 D;  3PIW A;  2L3O A;  3NCC A; 
#chains in the Genus database with same CATH homology
 1PW4 A;  5EQI A;  4UVM A;  4OH3 A;  5A2O A;  4IKV A;  4D2B A;  4JA3 A;  4D2C A;  4IKW A;  5D6K A;  4ZWB A;  4GC0 A;  4APS A;  4IKZ A;  4JR9 A;  4W6V A;  4XNI A;  5A2N A;  4LDS A;  4D2D A;  4ZWC A;  4ZW9 A;  3WDO A;  2XUT A;  4TPJ A;  2CFQ A;  2CFP A;  1PV6 A;  4TPH A;  4PYP A;  5EQH A;  4YB9 D;  1PV7 A;  4XNJ A;  4U4V A;  5C65 A;  5GXB A;  4IU9 A;  4IKX A;  4TPG A;  4JRE A;  5EQG A;  4Q65 A;  4J05 A;  4U4T A;  3O7Q A;  4ZYR A;  2V8N A;  4YBQ A;  2Y5Y A;  4IKY A;  4GBY A;  4GBZ A;  5D58 A;  4U4W A;  5D59 A;  4OAA A;  4IU8 A;  3O7P A;  4QIQ A;  4LEP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5A2OA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations