5D59A

In meso x-ray crystallography structure of the peptst-ala-phe complex at 100 k
Total Genus 187

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
471
structure length
448
Chain Sequence
GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMITSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH4 (109-136)TIV1 (7-10)TI'1 (8-11)AH1 (13-46)EMPTYAH6 (175-200)AH3 (84-103)O1 (104-106)TVIII1 (47-50)AH12 (386-404)AH2 (53-81)TIV3 (208-211)AH5 (143-173)TIV2 (106-109)TIV4 (316-319)3H1 (203-206)3H2 (214-216)AH8 (246-300)TI2 (446-449)AH13 (424-441)AH11 (353-378)AH9 (305-313)AH10 (327-345)TIV5 (379-382)3H5 (442-444)TI1 (138-141)3H4 (321-326)TII1 (347-350)AH7 (217-241)3H3 (301-303)Updating...
connected with : NaN
molecule tags Transport protein
source organism Streptococcus thermophilus (strain atcc baa-250 / lmg 18311)
publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures.
pubmed doi rcsb
molecule keywords Di-or tripeptide:H+ symporter
total genus 187
structure length 448
sequence length 471
ec nomenclature
pdb deposition date 2015-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 5d59A00
4GBYA 5C65A 4OH3A 4IU8A 2CFPA 4YB9D 1PV7A 2CFQA 4J05A 4GBZA 4LEPA 4LDSA 2XUTA 4OAAA 4JREA 2Y5YA 4XNIA 5D6KA 4ZYRA 4D2CA 4IKZA 4IU9A 4QIQA 4UVMA 4U4TA 4TPGA 5D58A 4D2BA 3O7PA 5EQIA 3WDOA 5D59A 4ZWCA 4W6VA 5A2OA 4ZWBA 4JR9A 4ZW9A 4GC0A 4IKWA 4JA3A 4PYPA 4IKXA 4XNJA 4Q65A 4D2DA 4U4WA 4IKVA 4TPJA 4APSA 5GXBA 4TPHA 5EQHA 4U4VA 1PV6A 3O7QA 4YBQA 4IKYA 5EQGA 5A2NA 2V8NA 1PW4A
chains in the Genus database with same CATH superfamily
3QAZA 3I4MD 2XUTA 3BPOA 4EXNA 1D9CA 3NCBA 2XQBA 1RCBA 4GRWA 3I4ND 4IKXA 1Y6ML 4U4VA 1HUWA 5FHXA 2O6IA 2KZ1A 5EQGA 5A2NA 2LMSA 3HOUD 1AU1A 3AYHA 2VUMD 1ITLA 3G6DA 4J4LC 4QIQA 4NKQC 4YDYI 1BCNA 1PY2A 5IP9D 1CYLA 4A93D 1YKBA 1M4BA 5IP7D 1GNCA 3HHCA 1LKIA 3QT2C 1IJZA 2HYMB 2V8NA 4WRLB 1RFBA 3WCYI 3B5KA 3S9DA 3NCFA 3UX9A 1BGCA 3G9VB 4GS7A 1CD9A 1J7VL 2B8ZA 4PYPA 1EMRA 2B91A 3UF5A 4CNIC 4J05A 4GBZA 1D9GA 5FUCA 4OAAA 1ALUA 4ZYRA 3VA2A 5D70A 1AXIA 3HMXB 4I77Z 4UVMA 4PS4A 3SE3B 2ILKA 2B63D 3IRHA 3BESL 4BY1D 5EQHA 1ETEA 1ITFA 3OG4A 2Q7NB 1PGRA 2JA7D 2R7ZD 1M4AA 4U4TA 5D58A 1Z7CA 2E9WC 5C3ED 4NN6A 1PVHB 3QB7A 1Y6KL 3PIVA 1ILKA 3MZGA 1EVSA 5C4XD 3DI3A 1HGUA 1BUYA 1M48A 2B90A 1PV7A 4EXPA 1EKUA 3L5XA 4D2BA 5D59A 2L3YA 3HOZD 3H3VE 1M4CA 1V7NV 1Y14A 3Q1SI 2R93D 1A7MA 3HOVD 5LQBA 2C35A 3N0PA 3D85C 5D71A 3INKC 1M49A 5C7XA 2L3OA 3DI2A 1IL6A 4A3ED 2O27A 4IKVA 2GMFA 4BBSD 3PIWA 5D72A 1HIKA 5C65A 3EJJA 1LQSL 1RW5A 4BBRD 3NCEA 4A3GD 2LAGA 2Y5YA 3D87A 4BY7D 4YUEC 1IARA 1P9MB 5D28B 4IKWA 4X51A 1ITIA 1Y6NL 4YBQA 2R92D 3SE4B 3NCCA 4DKEA 3QB1A 1Y1WD 1ITMA 1GA3A 2B5IA 5C44D 4DOHA 5IYCD 1A22A 4ZW9A 4A3CD 4APSA 5GXBA 5D22A 3DUHC 2B8UA 1IK0A 3BPLA 1BBNA 1F45B 1INRA 4LDSA 3TGXB 2Q98A 1HWGA 2Z3QA 2ERJD 2Q14A 4LRLA 5D6KA 1BP3A 1CNT1 4IU9A 4A3KD 1CSGA 5EQIA 3WDOA 4FA8E 3QWRB 4A3LD 1EERA 1FYHA 4O6KA 3H0GD 4XNJA 2H24A 3PO2D 3DGCL 4ZF7A 3UEZE 4NEMA 1HZIA 1AX8A 1M47A 1IRLA 4BXXD 4IU8A 1V7MV 3DLQI 4DKFA 2Z3RA 2OQPA 4A3MD 1HULA 1SCFA 1B5LA 1FG9A 2O26A 1HIJA 3LB6A 4DKDA 3HOWD 5FLMD 3NPZA 4NEJA 5TS9A 1N1FA 4IKZA 2JA5D 1HWHA 3HOYD 4ZWCA 4JR9A 1WU3I 1QVNA 4TPJA 4A3JD 1PV6A 1I1RB 1PW4A 4O9HA 4GBYA 5KNHI 4MHLA 4A3ID 2D9QA 3PO3D 1M4RA 4XNIA 4NI9A 4YQXA 3L5WI 5A2OA 5E4EA 3OG6A 4YPGC 4GC0A 4Z5RD 1F6FA 3N06A 4TPHA 4OH3A 3D48P 1BGEA 3LB6B 3OQ3A 3O7PA 4W6VA 4RS1A 1KF9A 2JA8D 2INTA 3O7QA 1Z92A 4A3FD 1JLIA 1VLKA 2JA6D 2CFPA 4YB9D 2CFQA 1BGDA 4D2CA 3BPNA 1EXZA 2B8XA 4TPGA 4A3BD 5IYDD 4JA3A 4NI7A 5L6YC 2CYKA 4D2DA 1Y1VD 1RHGA 3FKID 2D48A 4IKYA 1WCMD 4LEPA 4DKCA 4NN7A 4ZS7A 4JREA 3HOXD 2IL6A 1PW6A 4A3DD 3EW3A 4ZWBA 3HHRA 1CN4C 4Q65A 4U4WA 1LK3A 3UF2A 2PSMA 4NN5A 2B8YA 1NBPA 5IYBD
chains in the Genus database with same CATH topology
4GBYA 5C65A 4OH3A 4IU8A 2CFPA 4YB9D 1PV7A 2CFQA 4J05A 4GBZA 4LEPA 4LDSA 2XUTA 4OAAA 4JREA 2Y5YA 4XNIA 5D6KA 4ZYRA 4D2CA 4IKZA 4IU9A 4QIQA 4UVMA 4U4TA 4TPGA 5D58A 4D2BA 3O7PA 5EQIA 3WDOA 5D59A 4ZWCA 4W6VA 5A2OA 4ZWBA 4JR9A 4ZW9A 4GC0A 4IKWA 4JA3A 4PYPA 4IKXA 4XNJA 4Q65A 4D2DA 4U4WA 4IKVA 4TPJA 4APSA 5GXBA 4TPHA 5EQHA 4U4VA 1PV6A 3O7QA 4YBQA 4IKYA 5EQGA 5A2NA 2V8NA 1PW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GBY A;  5C65 A;  4OH3 A;  4IU8 A;  2CFP A;  4YB9 D;  1PV7 A;  2CFQ A;  4J05 A;  4GBZ A;  4LEP A;  4LDS A;  2XUT A;  4OAA A;  4JRE A;  2Y5Y A;  4XNI A;  5D6K A;  4ZYR A;  4D2C A;  4IKZ A;  4IU9 A;  4QIQ A;  4UVM A;  4U4T A;  4TPG A;  5D58 A;  4D2B A;  3O7P A;  5EQI A;  3WDO A;  5D59 A;  4ZWC A;  4W6V A;  5A2O A;  4ZWB A;  4JR9 A;  4ZW9 A;  4GC0 A;  4IKW A;  4JA3 A;  4PYP A;  4IKX A;  4XNJ A;  4Q65 A;  4D2D A;  4U4W A;  4IKV A;  4TPJ A;  4APS A;  5GXB A;  4TPH A;  5EQH A;  4U4V A;  1PV6 A;  3O7Q A;  4YBQ A;  4IKY A;  5EQG A;  5A2N A;  2V8N A;  1PW4 A; 
#chains in the Genus database with same CATH topology
 3QAZ A;  3I4M D;  2XUT A;  3BPO A;  4EXN A;  1D9C A;  3NCB A;  2XQB A;  1RCB A;  4GRW A;  3I4N D;  4IKX A;  1Y6M L;  4U4V A;  1HUW A;  5FHX A;  2O6I A;  2KZ1 A;  5EQG A;  5A2N A;  2LMS A;  3HOU D;  1AU1 A;  3AYH A;  2VUM D;  1ITL A;  3G6D A;  4J4L C;  4QIQ A;  4NKQ C;  4YDY I;  1BCN A;  1PY2 A;  5IP9 D;  1CYL A;  4A93 D;  1YKB A;  1M4B A;  5IP7 D;  1GNC A;  3HHC A;  1LKI A;  3QT2 C;  1IJZ A;  2HYM B;  2V8N A;  4WRL B;  1RFB A;  3WCY I;  3B5K A;  3S9D A;  3NCF A;  3UX9 A;  1BGC A;  3G9V B;  4GS7 A;  1CD9 A;  1J7V L;  2B8Z A;  4PYP A;  1EMR A;  2B91 A;  3UF5 A;  4CNI C;  4J05 A;  4GBZ A;  1D9G A;  5FUC A;  4OAA A;  1ALU A;  4ZYR A;  3VA2 A;  5D70 A;  1AXI A;  3HMX B;  4I77 Z;  4UVM A;  4PS4 A;  3SE3 B;  2ILK A;  2B63 D;  3IRH A;  3BES L;  4BY1 D;  5EQH A;  1ETE A;  1ITF A;  3OG4 A;  2Q7N B;  1PGR A;  2JA7 D;  2R7Z D;  1M4A A;  4U4T A;  5D58 A;  1Z7C A;  2E9W C;  5C3E D;  4NN6 A;  1PVH B;  3QB7 A;  1Y6K L;  3PIV A;  1ILK A;  3MZG A;  1EVS A;  5C4X D;  3DI3 A;  1HGU A;  1BUY A;  1M48 A;  2B90 A;  1PV7 A;  4EXP A;  1EKU A;  3L5X A;  4D2B A;  5D59 A;  2L3Y A;  3HOZ D;  3H3V E;  1M4C A;  1V7N V;  1Y14 A;  3Q1S I;  2R93 D;  1A7M A;  3HOV D;  5LQB A;  2C35 A;  3N0P A;  3D85 C;  5D71 A;  3INK C;  1M49 A;  5C7X A;  2L3O A;  3DI2 A;  1IL6 A;  4A3E D;  2O27 A;  4IKV A;  2GMF A;  4BBS D;  3PIW A;  5D72 A;  1HIK A;  5C65 A;  3EJJ A;  1LQS L;  1RW5 A;  4BBR D;  3NCE A;  4A3G D;  2LAG A;  2Y5Y A;  3D87 A;  4BY7 D;  4YUE C;  1IAR A;  1P9M B;  5D28 B;  4IKW A;  4X51 A;  1ITI A;  1Y6N L;  4YBQ A;  2R92 D;  3SE4 B;  3NCC A;  4DKE A;  3QB1 A;  1Y1W D;  1ITM A;  1GA3 A;  2B5I A;  5C44 D;  4DOH A;  5IYC D;  1A22 A;  4ZW9 A;  4A3C D;  4APS A;  5GXB A;  5D22 A;  3DUH C;  2B8U A;  1IK0 A;  3BPL A;  1BBN A;  1F45 B;  1INR A;  4LDS A;  3TGX B;  2Q98 A;  1HWG A;  2Z3Q A;  2ERJ D;  2Q14 A;  4LRL A;  5D6K A;  1BP3 A;  1CNT 1;  4IU9 A;  4A3K D;  1CSG A;  5EQI A;  3WDO A;  4FA8 E;  3QWR B;  4A3L D;  1EER A;  1FYH A;  4O6K A;  3H0G D;  4XNJ A;  2H24 A;  3PO2 D;  3DGC L;  4ZF7 A;  3UEZ E;  4NEM A;  1HZI A;  1AX8 A;  1M47 A;  1IRL A;  4BXX D;  4IU8 A;  1V7M V;  3DLQ I;  4DKF A;  2Z3R A;  2OQP A;  4A3M D;  1HUL A;  1SCF A;  1B5L A;  1FG9 A;  2O26 A;  1HIJ A;  3LB6 A;  4DKD A;  3HOW D;  5FLM D;  3NPZ A;  4NEJ A;  5TS9 A;  1N1F A;  4IKZ A;  2JA5 D;  1HWH A;  3HOY D;  4ZWC A;  4JR9 A;  1WU3 I;  1QVN A;  4TPJ A;  4A3J D;  1PV6 A;  1I1R B;  1PW4 A;  4O9H A;  4GBY A;  5KNH I;  4MHL A;  4A3I D;  2D9Q A;  3PO3 D;  1M4R A;  4XNI A;  4NI9 A;  4YQX A;  3L5W I;  5A2O A;  5E4E A;  3OG6 A;  4YPG C;  4GC0 A;  4Z5R D;  1F6F A;  3N06 A;  4TPH A;  4OH3 A;  3D48 P;  1BGE A;  3LB6 B;  3OQ3 A;  3O7P A;  4W6V A;  4RS1 A;  1KF9 A;  2JA8 D;  2INT A;  3O7Q A;  1Z92 A;  4A3F D;  1JLI A;  1VLK A;  2JA6 D;  2CFP A;  4YB9 D;  2CFQ A;  1BGD A;  4D2C A;  3BPN A;  1EXZ A;  2B8X A;  4TPG A;  4A3B D;  5IYD D;  4JA3 A;  4NI7 A;  5L6Y C;  2CYK A;  4D2D A;  1Y1V D;  1RHG A;  3FKI D;  2D48 A;  4IKY A;  1WCM D;  4LEP A;  4DKC A;  4NN7 A;  4ZS7 A;  4JRE A;  3HOX D;  2IL6 A;  1PW6 A;  4A3D D;  3EW3 A;  4ZWB A;  3HHR A;  1CN4 C;  4Q65 A;  4U4W A;  1LK3 A;  3UF2 A;  2PSM A;  4NN5 A;  2B8Y A;  1NBP A;  5IYB D; 
#chains in the Genus database with same CATH homology
 4GBY A;  5C65 A;  4OH3 A;  4IU8 A;  2CFP A;  4YB9 D;  1PV7 A;  2CFQ A;  4J05 A;  4GBZ A;  4LEP A;  4LDS A;  2XUT A;  4OAA A;  4JRE A;  2Y5Y A;  4XNI A;  5D6K A;  4ZYR A;  4D2C A;  4IKZ A;  4IU9 A;  4QIQ A;  4UVM A;  4U4T A;  4TPG A;  5D58 A;  4D2B A;  3O7P A;  5EQI A;  3WDO A;  5D59 A;  4ZWC A;  4W6V A;  5A2O A;  4ZWB A;  4JR9 A;  4ZW9 A;  4GC0 A;  4IKW A;  4JA3 A;  4PYP A;  4IKX A;  4XNJ A;  4Q65 A;  4D2D A;  4U4W A;  4IKV A;  4TPJ A;  4APS A;  5GXB A;  4TPH A;  5EQH A;  4U4V A;  1PV6 A;  3O7Q A;  4YBQ A;  4IKY A;  5EQG A;  5A2N A;  2V8N A;  1PW4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.