5D6KA

Pept - cim
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
473
structure length
448
Chain Sequence
KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTANQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH4 (109-135)EMPTYTIV1 (7-10)TI'1 (8-11)AH1 (13-46)AH2 (53-81)AH3 (84-103)TVIII1 (47-50)AH9 (281-300)AH13 (386-404)TVIII2 (205-208)TIV3 (208-211)AH5 (143-173)O1 (104-106)TIV2 (106-109)AH10 (305-313)TI2 (213-216)O2 (314-316)AH14 (422-441)TI3 (300-303)AH12 (353-378)TI5 (316-319)3H2 (321-326)3H3 (442-444)AH11 (327-343)TI6 (446-449)3H1 (203-205)AH6 (175-200)TI1 (138-141)AH7 (216-241)TIV5 (379-382)AH8 (246-270)Updating...
connected with : NaN
publication title The cubicon method for concentrating membrane proteins in the cubic mesophase.
pubmed doi rcsb
molecule tags Transport protein
source organism Streptococcus thermophilus (strain atcc baa-250 / lmg 18311)
molecule keywords Di-or tripeptide:H+ symporter
total genus 183
structure length 448
sequence length 473
ec nomenclature
pdb deposition date 2015-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 5d6kA00
5EQHA 4Q65A 4W6VA 4XNIA 4IU9A 5EQIA 3O7PA 4U4TA 5C65A 1PV7A 4IKZA 3O7QA 2V8NA 2XUTA 4PYPA 4LEPA 4YBQA 3WDOA 5D58A 5D59A 4ZWCA 4TPGA 2Y5YA 4D2CA 4YB9D 4OAAA 4D2BA 5GXBA 4D2DA 4GC0A 4IKYA 4U4WA 4XNJA 2CFPA 4APSA 5A2NA 4GBZA 4IKXA 4JR9A 4OH3A 5EQGA 5A2OA 4JREA 4IKVA 4J05A 1PW4A 2CFQA 4IU8A 4QIQA 4ZWBA 4JA3A 4U4VA 5D6KA 4TPHA 4UVMA 4TPJA 4IKWA 4GBYA 4LDSA 1PV6A 4ZW9A 4ZYRA
chains in the Genus database with same CATH superfamily
4A3ID 4IU9A 1J7VL 1HWGA 5C65A 1PV7A 3G6DA 1IJZA 1Y6ML 3HHCA 1INRA 1M4CA 2O6IA 4U4VA 4CNIC 5IYDD 1BP3A 4NN5A 2V8NA 5D59A 2GMFA 4A3ED 5D71A 1RHGA 4IKYA 3N0PA 4JR9A 4JREA 1PW6A 1BBNA 2R92D 1PV6A 4IU8A 1V7NV 4ZW9A 1BGDA 3OG6A 1PY2A 3QWRB 4BBRD 4A3LD 1CNT1 2ILKA 1A7MA 2B8ZA 4NI9A 1LKIA 4ZWCA 5D58A 4TPGA 1HZIA 4MHLA 4WRLB 1P9MB 3QAZA 3DGCL 1PGRA 4D2DA 4GBZA 4IKXA 3QB7A 1HGUA 3BESL 4YDYI 4DKFA 1KF9A 4EXPA 1YKBA 2B8UA 4EXNA 3WDOA 1RFBA 3DUHC 3WCYI 3HOYD 3OQ3A 4YUEC 3N06A 4APSA 4PS4A 1BGCA 2XQBA 4GBYA 3OG4A 1M4AA 2O27A 3PIWA 4W6VA 1ILKA 3O7QA 2R93D 1HUWA 5IP9D 1N1FA 1Y6KL 1M47A 1Y1VD 3FKID 3HOUD 5D22A 1LQSL 3QT2C 3UX9A 4A3CD 3SE3B 2LAGA 3LB6A 5FLMD 5EQIA 5TS9A 5C4XD 1ETEA 5L6YC 2JA7D 1IRLA 1HIJA 5D70A 4LEPA 3HOXD 2Z3RA 3MZGA 3BPLA 3I4MD 4NEMA 3L5XA 4GS7A 2CFQA 3H3VE 1JLIA 4ZS7A 1IK0A 4Z5RD 3NCEA 4O6KA 2VUMD 1RW5A 4U4TA 5FHXA 1EERA 4I77Z 2JA5D 1IL6A 3Q1SI 2JA8D 4U4WA 3PO3D 1SCFA 3INKC 2D48A 1BCNA 4ZWBA 4NKQC 1F45B 1FYHA 3UF2A 3L5WI 3B5KA 1GNCA 1Y14A 1EMRA 5FUCA 4YPGC 5C44D 5GXBA 3EW3A 4XNJA 4NEJA 2D9QA 1IARA 2LMSA 3S9DA 5C3ED 1EXZA 1ALUA 1CN4C 2B90A 4A3KD 4X51A 4J4LC 3AYHA 1M48A 1Y1WD 4YQXA 3DLQI 1M4RA 2B5IA 3SE4B 4LRLA 1ITFA 1Y6NL 2B91A 3BPNA 4O9HA 2B8YA 1B5LA 3HOVD 4A3FD 4A3MD 1D9CA 5IYCD 1HWHA 2KZ1A 4RS1A 1QVNA 4OH3A 1BGEA 3BPOA 1AXIA 4GRWA 5D6KA 3HHRA 3PIVA 5EQHA 4XNIA 3DI2A 5D72A 2B8XA 1CD9A 4IKZA 1F6FA 2OQPA 3NCFA 3NPZA 1M49A 2B63D 4YB9D 4BXXD 2Z3QA 4A3JD 1AX8A 1M4BA 5C7XA 4UVMA 1ITIA 2O26A 4NN6A 1WCMD 4BBSD 4PYPA 3PO2D 1HULA 2E9WC 5LQBA 5EQGA 2ERJD 3I4ND 4TPJA 1EVSA 4A93D 4BY1D 1GA3A 3NCBA 5D28B 3HOZD 3O7PA 4NN7A 3D48P 4A3DD 5E4EA 4YBQA 2IL6A 3HOWD 2C35A 4NI7A 1PVHB 2PSMA 3NCCA 1V7MV 1Z7CA 2CYKA 1CSGA 1ITMA 4TPHA 3VA2A 5IP7D 2INTA 5KNHI 4DOHA 3D87A 1VLKA 3LB6B 1HIKA 3G9VB 1ITLA 5A2OA 4A3GD 3QB1A 3TGXB 3IRHA 2Q98A 4ZF7A 2Q7NB 4IKWA 4LDSA 2HYMB 1I1RB 4Q65A 3DI3A 5IYBD 2Q14A 2XUTA 4BY7D 1D9GA 2H24A 2Y5YA 4D2CA 1LK3A 4D2BA 4GC0A 2CFPA 1EKUA 1NBPA 4IKVA 1CYLA 2JA6D 4JA3A 2R7ZD 2L3OA 3EJJA 3UEZE 4DKDA 1Z92A 4FA8E 4DKEA 4DKCA 1WU3I 3HMXB 1A22A 4OAAA 3H0GD 5A2NA 2L3YA 4J05A 1RCBA 1BUYA 1PW4A 3UF5A 4QIQA 4A3BD 1AU1A 3D85C 1FG9A 4ZYRA
chains in the Genus database with same CATH topology
5EQHA 4Q65A 4W6VA 4XNIA 4IU9A 5EQIA 3O7PA 4U4TA 5C65A 1PV7A 4IKZA 3O7QA 2V8NA 2XUTA 4PYPA 4LEPA 4YBQA 3WDOA 5D58A 5D59A 4ZWCA 4TPGA 2Y5YA 4D2CA 4YB9D 4OAAA 4D2BA 5GXBA 4D2DA 4GC0A 4IKYA 4U4WA 4XNJA 2CFPA 4APSA 5A2NA 4GBZA 4IKXA 4JR9A 4OH3A 5EQGA 5A2OA 4JREA 4IKVA 4J05A 1PW4A 2CFQA 4IU8A 4QIQA 4ZWBA 4JA3A 4U4VA 5D6KA 4TPHA 4UVMA 4TPJA 4IKWA 4GBYA 4LDSA 1PV6A 4ZW9A 4ZYRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EQH A;  4Q65 A;  4W6V A;  4XNI A;  4IU9 A;  5EQI A;  3O7P A;  4U4T A;  5C65 A;  1PV7 A;  4IKZ A;  3O7Q A;  2V8N A;  2XUT A;  4PYP A;  4LEP A;  4YBQ A;  3WDO A;  5D58 A;  5D59 A;  4ZWC A;  4TPG A;  2Y5Y A;  4D2C A;  4YB9 D;  4OAA A;  4D2B A;  5GXB A;  4D2D A;  4GC0 A;  4IKY A;  4U4W A;  4XNJ A;  2CFP A;  4APS A;  5A2N A;  4GBZ A;  4IKX A;  4JR9 A;  4OH3 A;  5EQG A;  5A2O A;  4JRE A;  4IKV A;  4J05 A;  1PW4 A;  2CFQ A;  4IU8 A;  4QIQ A;  4ZWB A;  4JA3 A;  4U4V A;  5D6K A;  4TPH A;  4UVM A;  4TPJ A;  4IKW A;  4GBY A;  4LDS A;  1PV6 A;  4ZW9 A;  4ZYR A; 
#chains in the Genus database with same CATH topology
 4A3I D;  4IU9 A;  1J7V L;  1HWG A;  5C65 A;  1PV7 A;  3G6D A;  1IJZ A;  1Y6M L;  3HHC A;  1INR A;  1M4C A;  2O6I A;  4U4V A;  4CNI C;  5IYD D;  1BP3 A;  4NN5 A;  2V8N A;  5D59 A;  2GMF A;  4A3E D;  5D71 A;  1RHG A;  4IKY A;  3N0P A;  4JR9 A;  4JRE A;  1PW6 A;  1BBN A;  2R92 D;  1PV6 A;  4IU8 A;  1V7N V;  4ZW9 A;  1BGD A;  3OG6 A;  1PY2 A;  3QWR B;  4BBR D;  4A3L D;  1CNT 1;  2ILK A;  1A7M A;  2B8Z A;  4NI9 A;  1LKI A;  4ZWC A;  5D58 A;  4TPG A;  1HZI A;  4MHL A;  4WRL B;  1P9M B;  3QAZ A;  3DGC L;  1PGR A;  4D2D A;  4GBZ A;  4IKX A;  3QB7 A;  1HGU A;  3BES L;  4YDY I;  4DKF A;  1KF9 A;  4EXP A;  1YKB A;  2B8U A;  4EXN A;  3WDO A;  1RFB A;  3DUH C;  3WCY I;  3HOY D;  3OQ3 A;  4YUE C;  3N06 A;  4APS A;  4PS4 A;  1BGC A;  2XQB A;  4GBY A;  3OG4 A;  1M4A A;  2O27 A;  3PIW A;  4W6V A;  1ILK A;  3O7Q A;  2R93 D;  1HUW A;  5IP9 D;  1N1F A;  1Y6K L;  1M47 A;  1Y1V D;  3FKI D;  3HOU D;  5D22 A;  1LQS L;  3QT2 C;  3UX9 A;  4A3C D;  3SE3 B;  2LAG A;  3LB6 A;  5FLM D;  5EQI A;  5TS9 A;  5C4X D;  1ETE A;  5L6Y C;  2JA7 D;  1IRL A;  1HIJ A;  5D70 A;  4LEP A;  3HOX D;  2Z3R A;  3MZG A;  3BPL A;  3I4M D;  4NEM A;  3L5X A;  4GS7 A;  2CFQ A;  3H3V E;  1JLI A;  4ZS7 A;  1IK0 A;  4Z5R D;  3NCE A;  4O6K A;  2VUM D;  1RW5 A;  4U4T A;  5FHX A;  1EER A;  4I77 Z;  2JA5 D;  1IL6 A;  3Q1S I;  2JA8 D;  4U4W A;  3PO3 D;  1SCF A;  3INK C;  2D48 A;  1BCN A;  4ZWB A;  4NKQ C;  1F45 B;  1FYH A;  3UF2 A;  3L5W I;  3B5K A;  1GNC A;  1Y14 A;  1EMR A;  5FUC A;  4YPG C;  5C44 D;  5GXB A;  3EW3 A;  4XNJ A;  4NEJ A;  2D9Q A;  1IAR A;  2LMS A;  3S9D A;  5C3E D;  1EXZ A;  1ALU A;  1CN4 C;  2B90 A;  4A3K D;  4X51 A;  4J4L C;  3AYH A;  1M48 A;  1Y1W D;  4YQX A;  3DLQ I;  1M4R A;  2B5I A;  3SE4 B;  4LRL A;  1ITF A;  1Y6N L;  2B91 A;  3BPN A;  4O9H A;  2B8Y A;  1B5L A;  3HOV D;  4A3F D;  4A3M D;  1D9C A;  5IYC D;  1HWH A;  2KZ1 A;  4RS1 A;  1QVN A;  4OH3 A;  1BGE A;  3BPO A;  1AXI A;  4GRW A;  5D6K A;  3HHR A;  3PIV A;  5EQH A;  4XNI A;  3DI2 A;  5D72 A;  2B8X A;  1CD9 A;  4IKZ A;  1F6F A;  2OQP A;  3NCF A;  3NPZ A;  1M49 A;  2B63 D;  4YB9 D;  4BXX D;  2Z3Q A;  4A3J D;  1AX8 A;  1M4B A;  5C7X A;  4UVM A;  1ITI A;  2O26 A;  4NN6 A;  1WCM D;  4BBS D;  4PYP A;  3PO2 D;  1HUL A;  2E9W C;  5LQB A;  5EQG A;  2ERJ D;  3I4N D;  4TPJ A;  1EVS A;  4A93 D;  4BY1 D;  1GA3 A;  3NCB A;  5D28 B;  3HOZ D;  3O7P A;  4NN7 A;  3D48 P;  4A3D D;  5E4E A;  4YBQ A;  2IL6 A;  3HOW D;  2C35 A;  4NI7 A;  1PVH B;  2PSM A;  3NCC A;  1V7M V;  1Z7C A;  2CYK A;  1CSG A;  1ITM A;  4TPH A;  3VA2 A;  5IP7 D;  2INT A;  5KNH I;  4DOH A;  3D87 A;  1VLK A;  3LB6 B;  1HIK A;  3G9V B;  1ITL A;  5A2O A;  4A3G D;  3QB1 A;  3TGX B;  3IRH A;  2Q98 A;  4ZF7 A;  2Q7N B;  4IKW A;  4LDS A;  2HYM B;  1I1R B;  4Q65 A;  3DI3 A;  5IYB D;  2Q14 A;  2XUT A;  4BY7 D;  1D9G A;  2H24 A;  2Y5Y A;  4D2C A;  1LK3 A;  4D2B A;  4GC0 A;  2CFP A;  1EKU A;  1NBP A;  4IKV A;  1CYL A;  2JA6 D;  4JA3 A;  2R7Z D;  2L3O A;  3EJJ A;  3UEZ E;  4DKD A;  1Z92 A;  4FA8 E;  4DKE A;  4DKC A;  1WU3 I;  3HMX B;  1A22 A;  4OAA A;  3H0G D;  5A2N A;  2L3Y A;  4J05 A;  1RCB A;  1BUY A;  1PW4 A;  3UF5 A;  4QIQ A;  4A3B D;  1AU1 A;  3D85 C;  1FG9 A;  4ZYR A; 
#chains in the Genus database with same CATH homology
 5EQH A;  4Q65 A;  4W6V A;  4XNI A;  4IU9 A;  5EQI A;  3O7P A;  4U4T A;  5C65 A;  1PV7 A;  4IKZ A;  3O7Q A;  2V8N A;  2XUT A;  4PYP A;  4LEP A;  4YBQ A;  3WDO A;  5D58 A;  5D59 A;  4ZWC A;  4TPG A;  2Y5Y A;  4D2C A;  4YB9 D;  4OAA A;  4D2B A;  5GXB A;  4D2D A;  4GC0 A;  4IKY A;  4U4W A;  4XNJ A;  2CFP A;  4APS A;  5A2N A;  4GBZ A;  4IKX A;  4JR9 A;  4OH3 A;  5EQG A;  5A2O A;  4JRE A;  4IKV A;  4J05 A;  1PW4 A;  2CFQ A;  4IU8 A;  4QIQ A;  4ZWB A;  4JA3 A;  4U4V A;  5D6K A;  4TPH A;  4UVM A;  4TPJ A;  4IKW A;  4GBY A;  4LDS A;  1PV6 A;  4ZW9 A;  4ZYR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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