The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
71
|
sequence length |
164
|
structure length |
164
|
Chain Sequence |
GAQQDAFVPLVRSMADRLNTADQVALSKWDTGQPVYDGQREAQVIANAATMASEYGLTAEDAINIFSDQVEANKEVQYALLNNWRRQGDAPATPRQSLAGVIRPILDKLQASIMQNLQSVAPLRSIADCHALVASAVGQVAEQASLDVLHRAALDRAVARICVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of chorismate mutase from Burkholderia phymatum.
pubmed doi rcsb |
| molecule tags |
Isomerase
|
| source organism |
Paraburkholderia phymatum (strain dsm 17167 / cip 108236 / lmg 21445 / stm815)
|
| molecule keywords |
Chorismate mutase
|
| total genus |
71
|
| structure length |
164
|
| sequence length |
164
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature | |
| pdb deposition date | 2016-10-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01817 | CM_2 | Chorismate mutase type II |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Growth Hormone; Chain: A; | Growth Hormone; Chain: A; |
#chains in the Genus database with same CATH superfamily 5TS9 A; #chains in the Genus database with same CATH topology 2B8Y A; 2L3O A; 4IU8 A; 1CNT 1; 5IYD D; 4J05 A; 5IP7 D; 4GBY A; 1LKI A; 1Z7C A; 3LB6 A; 1N1F A; 1PV7 A; 4DOH A; 3QB1 A; 1ETE A; 4PYP A; 1HWH A; 1IK0 A; 3UX9 A; 4ZW9 A; 5EQI A; 1BGC A; 1Y14 A; 2LAG A; 4LDS A; 4TPJ A; 1IAR A; 2Q7N B; 3O7P A; 4CNI C; 3L5W I; 1BGE A; 4YQX A; 4A3M D; 2B91 A; 1RW5 A; 5D59 A; 1HIK A; 4A93 D; 4U4T A; 3WDO A; 5FUC A; 5D58 A; 4Z5R D; 2Q14 A; 5L6Y C; 3H3V E; 5TS9 A; 2HYM B; 4EXN A; 4IKX A; 1A7M A; 2B90 A; 1ITF A; 2INT A; 5C65 A; 3SE3 B; 2XQB A; 1BBN A; 1D9C A; 4X51 A; 3PIW A; 4UVM A; 4FA8 E; 4IKW A; 3EJJ A; 4YBQ A; 4NN7 A; 1LQS L; 3QWR B; 3HOU D; 2IL6 A; 3HMX B; 3INK C; 4DKC A; 3NPZ A; 5IYC D; 1HUW A; 2GMF A; 1M4A A; 3WCY I; 2D48 A; 4MHL A; 4BBS D; 3HOX D; 4A3J D; 1AX8 A; 4BY7 D; 1CD9 A; 4LRL A; 4EXP A; 4A3G D; 1IRL A; 1BUY A; 2B5I A; 3UF2 A; 3DLQ I; 4RS1 A; 1F45 B; 3I4N D; 1Y6N L; 3BPL A; 4YUE C; 3OG4 A; 3VA2 A; 1I1R B; 3O7Q A; 4IKZ A; 4YB9 D; 2E9W C; 2KZ1 A; 1V7N V; 4ZWB A; 2Z3R A; 2LMS A; 4A3F D; 1JLI A; 1F6F A; 3UF5 A; 1EER A; 3D85 C; 3PO2 D; 1AXI A; 1PV6 A; 3PO3 D; 2CFQ A; 4DKD A; 1HUL A; 2R93 D; 2JA7 D; 2V8N A; 4O9H A; 2Q98 A; 4ZYR A; 5LQB A; 5E4E A; 1NBP A; 2R7Z D; 3QB7 A; 3DI3 A; 4ZWC A; 2Z3Q A; 3B5K A; 2JA5 D; 2O27 A; 4BXX D; 3QT2 C; 4W6V A; 2B8X A; 3BES L; 5D70 A; 2JA6 D; 1EKU A; 3FKI D; 1M49 A; 2VUM D; 1SCF A; 3HOZ D; 4A3I D; 1GA3 A; 4JA3 A; 4GBZ A; 2Y5Y A; 1WCM D; 1Y6K L; 4QIQ A; 3Q1S I; 3EW3 A; 4A3E D; 4XNJ A; 2L3Y A; 3PIV A; 1ALU A; 1ITM A; 1RCB A; 1PW6 A; 5EQH A; 3BPO A; 4NEM A; 4IKY A; 5C4X D; 5A2O A; 1Y1V D; 4NI9 A; 1Y6M L; 3QAZ A; 1FYH A; 1HWG A; 2O6I A; 4JR9 A; 5GXB A; 1HIJ A; 4A3C D; 4GRW A; 3SE4 B; 3HHR A; 1EVS A; 4ZF7 A; 4YPG C; 1LK3 A; 1B5L A; 5A2N A; 4A3L D; 1BGD A; 4J4L C; 1CSG A; 2ERJ D; 1PVH B; 3H0G D; 1GNC A; 5D22 A; 3HOY D; 4APS A; 3D48 P; 3NCF A; 3G6D A; 5FLM D; 4U4V A; 1AU1 A; 3IRH A; 3OQ3 A; 1HGU A; 4BBR D; 1D9G A; 4PS4 A; 4Q65 A; 5C3E D; 5FHX A; 4U4W A; 3DI2 A; 1ILK A; 4A3K D; 1YKB A; 2R92 D; 4A3B D; 4NI7 A; 1EMR A; 4D2C A; 1M48 A; 3DGC L; 2OQP A; 5C7X A; 4JRE A; 3TGX B; 4D2B A; 3N06 A; 5IP9 D; 1BCN A; 3HHC A; 3L5X A; 5D72 A; 1WU3 I; 4OAA A; 3UEZ E; 3NCB A; 4OH3 A; 3NCC A; 1FG9 A; 1CYL A; 1RFB A; 3BPN A; 4TPH A; 1HZI A; 5D28 B; 2B8Z A; 4GS7 A; 1ITI A; 2JA8 D; 2D9Q A; 4I77 Z; 1CN4 C; 1PY2 A; 2PSM A; 2CFP A; 3S9D A; 2B63 D; 4TPG A; 4WRL B; 3MZG A; 4BY1 D; 1ITL A; 5EQG A; 3G9V B; 2H24 A; 3I4M D; 3D87 A; 3LB6 B; 1P9M B; 4NN5 A; 4NN6 A; 4GC0 A; 1M4R A; 1EXZ A; 2O26 A; 1Y1W D; 1PW4 A; 1BP3 A; 4D2D A; 3N0P A; 1Z92 A; 2XUT A; 4DKE A; 5KNH I; 2B8U A; 4XNI A; 1PGR A; 1KF9 A; 4A3D D; 3NCE A; 1QVN A; 4ZS7 A; 4YDY I; 4NKQ C; 4NEJ A; 1INR A; 4IKV A; 1M4C A; 3HOW D; 3HOV D; 3OG6 A; 2ILK A; 1VLK A; 1A22 A; 3AYH A; 3DUH C; 4O6K A; 5IYB D; 5D71 A; 5D6K A; 2C35 A; 5C44 D; 4DKF A; 1J7V L; 1IL6 A; 1IJZ A; 1V7M V; 4LEP A; 4IU9 A; 2CYK A; 1M4B A; 1RHG A; 1M47 A; #chains in the Genus database with same CATH homology 4A3E D; 1HZI A; 2B8Y A; 2L3Y A; 1ALU A; 3PIV A; 5D28 B; 2B8Z A; 4GS7 A; 2L3O A; 4MHL A; 2JA8 D; 4BBS D; 1ITI A; 3HOX D; 1ITM A; 1RCB A; 1PW6 A; 4A3J D; 1AX8 A; 1CNT 1; 3BPO A; 4NEM A; 2D9Q A; 4BY7 D; 5IYD D; 1CD9 A; 4I77 Z; 5C4X D; 4LRL A; 1CN4 C; 5IP7 D; 1PY2 A; 2PSM A; 4EXP A; 4A3G D; 1Y1V D; 1LKI A; 1IRL A; 1Z7C A; 3S9D A; 4NI9 A; 1BUY A; 2B5I A; 1Y6M L; 1N1F A; 3DLQ I; 3LB6 A; 3QAZ A; 4RS1 A; 3UF2 A; 2B63 D; 4DOH A; 1F45 B; 3I4N D; 1Y6N L; 3BPL A; 1FYH A; 1HWG A; 2O6I A; 4WRL B; 4YUE C; 3OG4 A; 3QB1 A; 3VA2 A; 1HIJ A; 4A3C D; 1I1R B; 4GRW A; 1ETE A; 3SE4 B; 1HWH A; 3MZG A; 2E9W C; 3HHR A; 1IK0 A; 3UX9 A; 4BY1 D; 1EVS A; 4ZF7 A; 4YPG C; 1BGC A; 1ITL A; 1LK3 A; 1Y14 A; 2H24 A; 1B5L A; 2LAG A; 3G9V B; 1IAR A; 2Q7N B; 4CNI C; 3I4M D; 4A3L D; 2KZ1 A; 1V7N V; 2Z3R A; 3D87 A; 2LMS A; 1BGD A; 4J4L C; 3L5W I; 3LB6 B; 4A3F D; 1JLI A; 1P9M B; 1BGE A; 4YQX A; 4NN5 A; 1F6F A; 4NN6 A; 1CSG A; 1EER A; 3UF5 A; 2B91 A; 3D85 C; 1RW5 A; 2ERJ D; 1HIK A; 4A3M D; 4A93 D; 1M4R A; 1PVH B; 1RFB A; 3H0G D; 1GNC A; 5FUC A; 1AXI A; 3PO2 D; 1EXZ A; 3EW3 A; 5D22 A; 3HOY D; 2O26 A; 3D48 P; 3NCF A; 1Y1W D; 3G6D A; 4Z5R D; 3PO3 D; 4DKD A; 1HUL A; 1BP3 A; 2Q14 A; 5FLM D; 5L6Y C; 3H3V E; 2R93 D; 3N0P A; 1Z92 A; 5TS9 A; 2HYM B; 2JA7 D; 4DKE A; 5KNH I; 4O9H A; 2B8U A; 2Q98 A; 1AU1 A; 3IRH A; 1PGR A; 1KF9 A; 3OQ3 A; 4EXN A; 5LQB A; 4A3D D; 1A7M A; 5E4E A; 1NBP A; 3NCE A; 1HGU A; 2B90 A; 1QVN A; 4BBR D; 4ZS7 A; 1ITF A; 4YDY I; 4NKQ C; 1D9G A; 2INT A; 2R7Z D; 3SE3 B; 3QB7 A; 4NEJ A; 1INR A; 2XQB A; 3DI3 A; 4PS4 A; 5C3E D; 1M4C A; 1BBN A; 2Z3Q A; 1D9C A; 3HOW D; 5FHX A; 3HOV D; 4X51 A; 3OG6 A; 3B5K A; 2JA5 D; 2ILK A; 1VLK A; 3PIW A; 2O27 A; 4BXX D; 1A22 A; 3AYH A; 1ILK A; 3DI2 A; 1YKB A; 3DUH C; 3QT2 C; 4O6K A; 4A3K D; 5IYB D; 5D71 A; 4FA8 E; 3BPN A; 2R92 D; 4A3B D; 4NI7 A; 2B8X A; 3BES L; 1EMR A; 5D70 A; 2JA6 D; 1EKU A; 1M48 A; 2C35 A; 3DGC L; 3EJJ A; 4DKF A; 5C44 D; 2OQP A; 3FKI D; 5C7X A; 1J7V L; 1IL6 A; 4NN7 A; 1IJZ A; 1LQS L; 3QWR B; 1V7M V; 3HOU D; 1M49 A; 2IL6 A; 3HMX B; 2VUM D; 3INK C; 3TGX B; 1SCF A; 4DKC A; 3HOZ D; 3NPZ A; 5IYC D; 3N06 A; 1HUW A; 5IP9 D; 1BCN A; 3HHC A; 3L5X A; 4A3I D; 5D72 A; 1WU3 I; 2CYK A; 2GMF A; 3UEZ E; 1GA3 A; 3NCB A; 3NCC A; 1M4B A; 1M4A A; 1WCM D; 1RHG A; 1FG9 A; 3WCY I; 1Y6K L; 1CYL A; 1M47 A; 3Q1S I; 2D48 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
