5TS9 | Genus

Total Genus 71

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	71
sequence length	164
structure length	164
Chain Sequence	GAQQDAFVPLVRSMADRLNTADQVALSKWDTGQPVYDGQREAQVIANAATMASEYGLTAEDAINIFSDQVEANKEVQYALLNNWRRQGDAPATPRQSLAGVIRPILDKLQASIMQNLQSVAPLRSIADCHALVASAVGQVAEQASLDVLHRAALDRAVARICVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Paraburkholderia phymatum (strain dsm 17167 / cip 108236 / lmg 21445 / stm815)
publication title	Crystal structure of chorismate mutase from Burkholderia phymatum. pubmed doi rcsb
molecule keywords	Chorismate mutase
total genus	71
structure length	164
sequence length	164
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2016-10-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01817	CM_2	Chorismate mutase type II

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1250.110	Mainly Alpha	Up-down Bundle	Growth Hormone; Chain: A;	Growth Hormone; Chain: A;	5ts9A00

5TS9A
chains in the Genus database with same CATH superfamily

3D85C 4A3GD 2D48A 5IYBD 4IKVA 3DI3A 5IP7D 4A3ED 5EQIA 3HOZD 3IRHA 4YDYI 1Y6ML 1N1FA 1AU1A 3OG6A 2R93D 1CYLA 2VUMD 5L6YC 3HOWD 4JA3A 4U4VA 3TGXB 4YUEC 4Z5RD 1BBNA 1FYHA 4ZW9A 1M4AA 3BPNA 2V8NA 3VA2A 2Z3QA 4OAAA 1BGCA 1F45B 4BY1D 2HYMB 4GS7A 2B8ZA 2Y5YA 1RCBA 3PIWA 5C7XA 1EMRA 1CSGA 1ITIA 1ITMA 3PO3D 1ITLA 3UF5A 4FA8E 2ILKA 3H0GD 3NPZA 5A2NA 5C65A 1M48A 3N0PA 3G9VB 1Z92A 3NCEA 3EJJA 1BGEA 3O7QA 1A7MA 1BP3A 1IJZA 4YB9D 4PYPA 3QWRB 5FLMD 4A3FD 3FKID 1HWGA 5KNHI 2B63D 4IKXA 1PGRA 2INTA 1D9GA 2JA5D 5D70A 4LEPA 3NCBA 5EQHA 4TPHA 1BUYA 4J4LC 3Q1SI 2R92D 1NBPA 5D6KA 2B8YA 3HHRA 1RHGA 3OQ3A 3HOUD 5A2OA 4D2DA 4BBSD 3PO2D 4JR9A 3UF2A 2L3YA 4A3ID 3B5KA 2O26A 2D9QA 4NEJA 3SE4B 2O27A 4JREA 4YBQA 2GMFA 1M47A 3HHCA 5D28B 2R7ZD 1M4CA 4OH3A 2OQPA 3HOVD 2B8XA 4MHLA 2JA6D 1LQSL 1EXZA 4EXPA 4Q65A 5C3ED 4NN6A 1FG9A 4X51A 1PY2A 1B5LA 4D2CA 1ITFA 2LMSA 1IARA 1HULA 3DUHC 4LRLA 1PVHB 1Y1VD 4IKZA 3PIVA 3MZGA 4NN5A 3DGCL 4A3BD 2CFQA 4DKFA 2CFPA 5IYCD 1WCMD 4O6KA 1CD9A 1QVNA 4A3JD 1HGUA 5C44D 3I4ND 5E4EA 1LKIA 2B8UA 1GA3A 3DI2A 4NI9A 4A3LD 4CNIC 2Q7NB 5GXBA 5IP9D 1M49A 5IYDD 3O7PA 3L5WI 5LQBA 2B5IA 4GRWA 3QB1A 3QAZA 3LB6B 4DOHA 2L3OA 4U4TA 3LB6A 4ZS7A 4UVMA 2JA7D 4W6VA 4BBRD 4YQXA 4BY7D 1JLIA 4ZWBA 1J7VL 3WDOA 5D72A 4NI7A 2XQBA 1AX8A 4PS4A 1A22A 1VLKA 3I4MD 3INKC 4A3DD 1IRLA 1CN4C 3DLQI 3UX9A 4IU9A 4A3CD 5EQGA 1D9CA 2KZ1A 1PW6A 1AXIA 3QB7A 5D59A 4NEMA 1PV7A 3EW3A 3BPLA 2B90A 1RFBA 1V7MV 3H3VE 2H24A 5FUCA 3NCFA 4YPGC 3HMXB 2B91A 3OG4A 1IL6A 3D87A 1ILKA 4O9HA 3HOXD 1PV6A 1Y1WD 1GNCA 4U4WA 5D71A 5D22A 1WU3I 4IKYA 1BCNA 3WCYI 4A3KD 3D48P 4LDSA 2O6IA 4GC0A 1IK0A 1ETEA 4ZF7A 1V7NV 2Q98A 4TPGA 4XNIA 4NKQC 4DKDA 4EXNA 1ALUA 4DKEA 1YKBA 2C35A 2IL6A 2LAGA 1HIJA 2ERJD 4DKCA 4J05A 4WRLB 1EKUA 1Y14A 3QT2C 4GBZA 1SCFA 1EERA 3BPOA 3UEZE 1PW4A 3AYHA 3S9DA 3HOYD 3NCCA 1EVSA 4GBYA 3G6DA 3SE3B 2E9WC 1CNT1 2JA8D 1Z7CA 5D58A 1P9MB 4D2BA 2PSMA 1HIKA 4XNJA 1HZIA 2Z3RA 4A3MD 1F6FA 3BESL 1HWHA 4IU8A 1M4BA 5FHXA 1LK3A 1BGDA 1Y6NL 5C4XD 4IKWA 4BXXD 4ZWCA 1M4RA 1I1RB 2CYKA 1KF9A 4TPJA 3N06A 4NN7A 1RW5A 4RS1A 3L5XA 5TS9A 4APSA 1HUWA 4I77Z 4ZYRA 2XUTA 2Q14A 4A93D 1INRA 1Y6KL 4QIQA
chains in the Genus database with same CATH topology

3D85C 4A3GD 2O6IA 2D48A 2Q7NB 2B8YA 5IP9D 1M49A 5IYBD 1ETEA 4ZF7A 5IYDD 1IK0A 3L5WI 1V7NV 2Q98A 3DI3A 4NKQC 3HHRA 4DKDA 5IP7D 4EXNA 5LQBA 1RHGA 1ALUA 2B5IA 4DKEA 4A3ED 3IRHA 3OQ3A 4GRWA 3HOZD 3QB1A 3HOUD 1YKBA 2C35A 1Y6ML 4YDYI 2IL6A 1N1FA 3QAZA 1AU1A 3LB6B 2LAGA 3OG6A 1HIJA 2L3OA 4DOHA 4BBSD 2ERJD 2R93D 1CYLA 2VUMD 4DKCA 3PO2D 4WRLB 5L6YC 1EKUA 3HOWD 3UF2A 1Y14A 2L3YA 3QT2C 3TGXB 3LB6A 4A3ID 3B5KA 4ZS7A 2O26A 2D9QA 4NEJA 4YUEC 4Z5RD 2JA7D 1SCFA 3SE4B 4BBRD 4YQXA 1BBNA 2O27A 4BY7D 2GMFA 1JLIA 1M47A 1EERA 1FYHA 1J7VL 3BPOA 3UEZE 1M4AA 3BPNA 5D72A 3AYHA 3VA2A 3HHCA 4NI7A 3S9DA 2Z3QA 2XQBA 1AX8A 3HOYD 4PS4A 4A3LD 3NCCA 5D28B 1BGCA 1F45B 4BY1D 2R7ZD 1M4CA 2HYMB 4GS7A 1EVSA 1A22A 2OQPA 3HOVD 2B8XA 3G6DA 2B8ZA 1RCBA 2E9WC 3SE3B 1CNT1 3PIWA 2JA8D 4MHLA 1VLKA 2JA6D 3INKC 5C7XA 1Z7CA 1EMRA 3I4MD 1CSGA 4A3DD 1LQSL 1EXZA 1IRLA 1P9MB 4EXPA 2PSMA 1HIKA 1CN4C 3DLQI 3UX9A 1ITIA 4A3CD 1ITMA 1D9CA 5C3ED 4NN6A 1FG9A 3PO3D 2KZ1A 1ITLA 1HZIA 2Z3RA 4X51A 1PW6A 1PY2A 1B5LA 3UF5A 4FA8E 4A3MD 1AXIA 2ILKA 3H0GD 3NPZA 1F6FA 3BESL 1HWHA 1ITFA 1M48A 3N0PA 3QB7A 1M4BA 3G9VB 2LMSA 4NEMA 1Z92A 1IARA 3EW3A 3BPLA 3NCEA 2B90A 5FHXA 3EJJA 1BGEA 1LK3A 1BGDA 1HULA 3DUHC 1A7MA 1BP3A 1RFBA 1PVHB 1V7MV 1Y6NL 4LRLA 3H3VE 1IJZA 5C4XD 1Y1VD 2H24A 5FUCA 4BXXD 3NCFA 3PIVA 4YPGC 1M4RA 2B91A 3HMXB 3MZGA 1IL6A 3D87A 3OG4A 3DGCL 4NN5A 1I1RB 3QWRB 4A3BD 5FLMD 2CYKA 4A3FD 4DKFA 1KF9A 1ILKA 1WCMD 5IYCD 3N06A 4O9HA 3HOXD 4NN7A 1Y1WD 3FKID 1HWGA 1GNCA 1RW5A 5KNHI 4O6KA 4RS1A 2B63D 1CD9A 1QVNA 3L5XA 4A3JD 1PGRA 2INTA 5D71A 5TS9A 1D9GA 1HGUA 2JA5D 5C44D 1HUWA 3I4ND 4I77Z 5E4EA 5D70A 1LKIA 2B8UA 5D22A 1WU3I 3NCBA 1GA3A 2Q14A 3DI2A 1BUYA 1BCNA 4NI9A 4A93D 4J4LC 3WCYI 1INRA 1Y6KL 3D48P 3Q1SI 4A3KD 2R92D 1NBPA 4CNIC
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5TS9 A; 
#chains in the Genus database with same CATH topology
 3D85 C;  4A3G D;  2D48 A;  5IYB D;  4IKV A;  3DI3 A;  5IP7 D;  4A3E D;  5EQI A;  3HOZ D;  3IRH A;  4YDY I;  1Y6M L;  1N1F A;  1AU1 A;  3OG6 A;  2R93 D;  1CYL A;  2VUM D;  5L6Y C;  3HOW D;  4JA3 A;  4U4V A;  3TGX B;  4YUE C;  4Z5R D;  1BBN A;  1FYH A;  4ZW9 A;  1M4A A;  3BPN A;  2V8N A;  3VA2 A;  2Z3Q A;  4OAA A;  1BGC A;  1F45 B;  4BY1 D;  2HYM B;  4GS7 A;  2B8Z A;  2Y5Y A;  1RCB A;  3PIW A;  5C7X A;  1EMR A;  1CSG A;  1ITI A;  1ITM A;  3PO3 D;  1ITL A;  3UF5 A;  4FA8 E;  2ILK A;  3H0G D;  3NPZ A;  5A2N A;  5C65 A;  1M48 A;  3N0P A;  3G9V B;  1Z92 A;  3NCE A;  3EJJ A;  1BGE A;  3O7Q A;  1A7M A;  1BP3 A;  1IJZ A;  4YB9 D;  4PYP A;  3QWR B;  5FLM D;  4A3F D;  3FKI D;  1HWG A;  5KNH I;  2B63 D;  4IKX A;  1PGR A;  2INT A;  1D9G A;  2JA5 D;  5D70 A;  4LEP A;  3NCB A;  5EQH A;  4TPH A;  1BUY A;  4J4L C;  3Q1S I;  2R92 D;  1NBP A;  5D6K A;  2B8Y A;  3HHR A;  1RHG A;  3OQ3 A;  3HOU D;  5A2O A;  4D2D A;  4BBS D;  3PO2 D;  4JR9 A;  3UF2 A;  2L3Y A;  4A3I D;  3B5K A;  2O26 A;  2D9Q A;  4NEJ A;  3SE4 B;  2O27 A;  4JRE A;  4YBQ A;  2GMF A;  1M47 A;  3HHC A;  5D28 B;  2R7Z D;  1M4C A;  4OH3 A;  2OQP A;  3HOV D;  2B8X A;  4MHL A;  2JA6 D;  1LQS L;  1EXZ A;  4EXP A;  4Q65 A;  5C3E D;  4NN6 A;  1FG9 A;  4X51 A;  1PY2 A;  1B5L A;  4D2C A;  1ITF A;  2LMS A;  1IAR A;  1HUL A;  3DUH C;  4LRL A;  1PVH B;  1Y1V D;  4IKZ A;  3PIV A;  3MZG A;  4NN5 A;  3DGC L;  4A3B D;  2CFQ A;  4DKF A;  2CFP A;  5IYC D;  1WCM D;  4O6K A;  1CD9 A;  1QVN A;  4A3J D;  1HGU A;  5C44 D;  3I4N D;  5E4E A;  1LKI A;  2B8U A;  1GA3 A;  3DI2 A;  4NI9 A;  4A3L D;  4CNI C;  2Q7N B;  5GXB A;  5IP9 D;  1M49 A;  5IYD D;  3O7P A;  3L5W I;  5LQB A;  2B5I A;  4GRW A;  3QB1 A;  3QAZ A;  3LB6 B;  4DOH A;  2L3O A;  4U4T A;  3LB6 A;  4ZS7 A;  4UVM A;  2JA7 D;  4W6V A;  4BBR D;  4YQX A;  4BY7 D;  1JLI A;  4ZWB A;  1J7V L;  3WDO A;  5D72 A;  4NI7 A;  2XQB A;  1AX8 A;  4PS4 A;  1A22 A;  1VLK A;  3I4M D;  3INK C;  4A3D D;  1IRL A;  1CN4 C;  3DLQ I;  3UX9 A;  4IU9 A;  4A3C D;  5EQG A;  1D9C A;  2KZ1 A;  1PW6 A;  1AXI A;  3QB7 A;  5D59 A;  4NEM A;  1PV7 A;  3EW3 A;  3BPL A;  2B90 A;  1RFB A;  1V7M V;  3H3V E;  2H24 A;  5FUC A;  3NCF A;  4YPG C;  3HMX B;  2B91 A;  3OG4 A;  1IL6 A;  3D87 A;  1ILK A;  4O9H A;  3HOX D;  1PV6 A;  1Y1W D;  1GNC A;  4U4W A;  5D71 A;  5D22 A;  1WU3 I;  4IKY A;  1BCN A;  3WCY I;  4A3K D;  3D48 P;  4LDS A;  2O6I A;  4GC0 A;  1IK0 A;  1ETE A;  4ZF7 A;  1V7N V;  2Q98 A;  4TPG A;  4XNI A;  4NKQ C;  4DKD A;  4EXN A;  1ALU A;  4DKE A;  1YKB A;  2C35 A;  2IL6 A;  2LAG A;  1HIJ A;  2ERJ D;  4DKC A;  4J05 A;  4WRL B;  1EKU A;  1Y14 A;  3QT2 C;  4GBZ A;  1SCF A;  1EER A;  3BPO A;  3UEZ E;  1PW4 A;  3AYH A;  3S9D A;  3HOY D;  3NCC A;  1EVS A;  4GBY A;  3G6D A;  3SE3 B;  2E9W C;  1CNT 1;  2JA8 D;  1Z7C A;  5D58 A;  1P9M B;  4D2B A;  2PSM A;  1HIK A;  4XNJ A;  1HZI A;  2Z3R A;  4A3M D;  1F6F A;  3BES L;  1HWH A;  4IU8 A;  1M4B A;  5FHX A;  1LK3 A;  1BGD A;  1Y6N L;  5C4X D;  4IKW A;  4BXX D;  4ZWC A;  1M4R A;  1I1R B;  2CYK A;  1KF9 A;  4TPJ A;  3N06 A;  4NN7 A;  1RW5 A;  4RS1 A;  3L5X A;  5TS9 A;  4APS A;  1HUW A;  4I77 Z;  4ZYR A;  2XUT A;  2Q14 A;  4A93 D;  1INR A;  1Y6K L;  4QIQ A; 
#chains in the Genus database with same CATH homology
 3D85 C;  4A3G D;  2O6I A;  2D48 A;  2Q7N B;  2B8Y A;  5IP9 D;  1M49 A;  5IYB D;  1ETE A;  4ZF7 A;  5IYD D;  1IK0 A;  3L5W I;  1V7N V;  2Q98 A;  3DI3 A;  4NKQ C;  3HHR A;  4DKD A;  5IP7 D;  4EXN A;  5LQB A;  1RHG A;  1ALU A;  2B5I A;  4DKE A;  4A3E D;  3IRH A;  3OQ3 A;  4GRW A;  3HOZ D;  3QB1 A;  3HOU D;  1YKB A;  2C35 A;  1Y6M L;  4YDY I;  2IL6 A;  1N1F A;  3QAZ A;  1AU1 A;  3LB6 B;  2LAG A;  3OG6 A;  1HIJ A;  2L3O A;  4DOH A;  4BBS D;  2ERJ D;  2R93 D;  1CYL A;  2VUM D;  4DKC A;  3PO2 D;  4WRL B;  5L6Y C;  1EKU A;  3HOW D;  3UF2 A;  1Y14 A;  2L3Y A;  3QT2 C;  3TGX B;  3LB6 A;  4A3I D;  3B5K A;  4ZS7 A;  2O26 A;  2D9Q A;  4NEJ A;  4YUE C;  4Z5R D;  2JA7 D;  1SCF A;  3SE4 B;  4BBR D;  4YQX A;  1BBN A;  2O27 A;  4BY7 D;  2GMF A;  1JLI A;  1M47 A;  1EER A;  1FYH A;  1J7V L;  3BPO A;  3UEZ E;  1M4A A;  3BPN A;  5D72 A;  3AYH A;  3VA2 A;  3HHC A;  4NI7 A;  3S9D A;  2Z3Q A;  2XQB A;  1AX8 A;  3HOY D;  4PS4 A;  4A3L D;  3NCC A;  5D28 B;  1BGC A;  1F45 B;  4BY1 D;  2R7Z D;  1M4C A;  2HYM B;  4GS7 A;  1EVS A;  1A22 A;  2OQP A;  3HOV D;  2B8X A;  3G6D A;  2B8Z A;  1RCB A;  2E9W C;  3SE3 B;  1CNT 1;  3PIW A;  2JA8 D;  4MHL A;  1VLK A;  2JA6 D;  3INK C;  5C7X A;  1Z7C A;  1EMR A;  3I4M D;  1CSG A;  4A3D D;  1LQS L;  1EXZ A;  1IRL A;  1P9M B;  4EXP A;  2PSM A;  1HIK A;  1CN4 C;  3DLQ I;  3UX9 A;  1ITI A;  4A3C D;  1ITM A;  1D9C A;  5C3E D;  4NN6 A;  1FG9 A;  3PO3 D;  2KZ1 A;  1ITL A;  1HZI A;  2Z3R A;  4X51 A;  1PW6 A;  1PY2 A;  1B5L A;  3UF5 A;  4FA8 E;  4A3M D;  1AXI A;  2ILK A;  3H0G D;  3NPZ A;  1F6F A;  3BES L;  1HWH A;  1ITF A;  1M48 A;  3N0P A;  3QB7 A;  1M4B A;  3G9V B;  2LMS A;  4NEM A;  1Z92 A;  1IAR A;  3EW3 A;  3BPL A;  3NCE A;  2B90 A;  5FHX A;  3EJJ A;  1BGE A;  1LK3 A;  1BGD A;  1HUL A;  3DUH C;  1A7M A;  1BP3 A;  1RFB A;  1PVH B;  1V7M V;  1Y6N L;  4LRL A;  3H3V E;  1IJZ A;  5C4X D;  1Y1V D;  2H24 A;  5FUC A;  4BXX D;  3NCF A;  3PIV A;  4YPG C;  1M4R A;  2B91 A;  3HMX B;  3MZG A;  1IL6 A;  3D87 A;  3OG4 A;  3DGC L;  4NN5 A;  1I1R B;  3QWR B;  4A3B D;  5FLM D;  2CYK A;  4A3F D;  4DKF A;  1KF9 A;  1ILK A;  1WCM D;  5IYC D;  3N06 A;  4O9H A;  3HOX D;  4NN7 A;  1Y1W D;  3FKI D;  1HWG A;  1GNC A;  1RW5 A;  5KNH I;  4O6K A;  4RS1 A;  2B63 D;  1CD9 A;  1QVN A;  3L5X A;  4A3J D;  1PGR A;  2INT A;  5D71 A;  5TS9 A;  1D9G A;  1HGU A;  2JA5 D;  5C44 D;  1HUW A;  3I4N D;  4I77 Z;  5E4E A;  5D70 A;  1LKI A;  2B8U A;  5D22 A;  1WU3 I;  3NCB A;  1GA3 A;  2Q14 A;  3DI2 A;  1BUY A;  1BCN A;  4NI9 A;  4A93 D;  4J4L C;  3WCY I;  1INR A;  1Y6K L;  3D48 P;  3Q1S I;  4A3K D;  2R92 D;  1NBP A;  4CNI C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5TS9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations