The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
36
|
sequence length |
120
|
structure length |
120
|
Chain Sequence |
QPSPVTRPWQHVDAIKEALSLLNDSTDTAAVMDETVEVVSEMFDSQEPTCLQTRLELYKQGLRGSLTSLTGSLTMMASHYKKHCPPTQETSCETQIITFKSFKENLKDFLFIIPFDCWEP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.
pubmed doi rcsb |
| molecule keywords |
Granulocyte-macrophage colony-stimulating factor
|
| molecule tags |
Cytokine
|
| source organism |
Ovis aries
|
| total genus |
36
|
| structure length |
120
|
| sequence length |
120
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2015-08-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01109 | GM_CSF | Granulocyte-macrophage colony-stimulating factor |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Growth Hormone; Chain: A; | Growth Hormone; Chain: A; |
#chains in the Genus database with same CATH superfamily 5D22 A; 1V7N V; 5D72 A; 1PW6 A; 1BP3 A; 1M48 A; 2B8X A; 4NEJ A; 3L5X A; 1ITI A; 1BGD A; 3BPN A; 4MHL A; 5FHX A; 1SCF A; 4NEM A; 4ZF7 A; 1ITM A; 3HHR A; 1WU3 I; 2ERJ D; 3LB6 B; 4YDY I; 1CYL A; 1GNC A; 3G6D A; 1BUY A; 4RS1 A; 1P9M B; 1Y6N L; 1AXI A; 2KZ1 A; 3BPL A; 5L6Y C; 5LQB A; 5D28 B; 4YQX A; 2B91 A; 4CNI C; 2D48 A; 1IL6 A; 3QB7 A; 3LB6 A; 1HGU A; 1HIJ A; 2ILK A; 1AX8 A; 1ITL A; 1BGC A; 3D48 P; 1IAR A; 3EW3 A; 4DOH A; 1D9G A; 4ZS7 A; 1A7M A; 3UF5 A; 2B5I A; 1M4B A; 1A22 A; 1YKB A; 3PIV A; 1RW5 A; 3G9V B; 2E9W C; 2LMS A; 3WCY I; 3L5W I; 1EMR A; 4O6K A; 2CYK A; 1HWH A; 4J4L C; 2B8Z A; 4X51 A; 1I1R B; 1CD9 A; 1EER A; 1Z92 A; 1ILK A; 1BBN A; 3NCE A; 3SE3 B; 1F6F A; 4YPG C; 1AU1 A; 2H24 A; 1M4R A; 2Q98 A; 3BPO A; 3QAZ A; 4YUE C; 1PVH B; 1NBP A; 3MZG A; 1LQS L; 1HZI A; 3DUH C; 2INT A; 5D70 A; 1Y6K L; 1LKI A; 1Y6M L; 1CN4 C; 2O26 A; 3UEZ E; 4FA8 E; 4O9H A; 3DGC L; 1HWG A; 3VA2 A; 4NKQ C; 1CNT 1; 3D85 C; 3UX9 A; 1M4C A; 1F45 B; 2B8U A; 1GA3 A; 1PGR A; 1INR A; 3QWR B; 1M47 A; 1RCB A; 3Q1S I; 2Q7N B; 4WRL B; 2IL6 A; 4I77 Z; 1HIK A; 2D9Q A; 1BGE A; 1ALU A; 3DLQ I; 1M49 A; 3NPZ A; 5E4E A; 5D71 A; 1PY2 A; 1M4A A; 5FUC A; 3N0P A; 3S9D A; 1D9C A; 2B90 A; 4GRW A; 3INK C; 5KNH I; 1CSG A; 3NCF A; 1KF9 A; 3D87 A; 3NCB A; 1IRL A; 1N1F A; 2B8Y A; 2HYM B; 4NI9 A; 1EXZ A; 1J7V L; 3HMX B; 1HUL A; 3EJJ A; 4PS4 A; 1LK3 A; 1IK0 A; 1BCN A; 1EVS A; 1ITF A; 3PIW A; 3BES L; 5C7X A; 1IJZ A; 2O27 A; 3UF2 A; 3N06 A; 1FG9 A; 4NI7 A; 1VLK A; 4Z5R D; 1B5L A; 2GMF A; 2L3Y A; 1ETE A; 3B5K A; 3QT2 C; 1RHG A; 1FYH A; 2L3O A; 2LAG A; 3OQ3 A; 1Z7C A; 1RFB A; 1EKU A; 1JLI A; 1V7M V; 3NCC A; 3SE4 B; 1QVN A; 1HUW A; 3QB1 A; #chains in the Genus database with same CATH topology 5D72 A; 4LDS A; 4NEJ A; 3L5X A; 3HOZ D; 2O6I A; 4NEM A; 1CYL A; 3HHR A; 2Z3Q A; 3G6D A; 4RS1 A; 1P9M B; 4IU9 A; 4LRL A; 1AXI A; 3BPL A; 4NN6 A; 4W6V A; 1ITL A; 3HOU D; 3D48 P; 4GC0 A; 4DOH A; 4ZS7 A; 2B5I A; 1YKB A; 1RW5 A; 3G9V B; 4YB9 D; 1Y14 A; 1HWH A; 3HOV D; 4NN5 A; 3NCE A; 3FKI D; 3SE3 B; 1F6F A; 3TGX B; 4DKE A; 3BPO A; 1NBP A; 3WDO A; 1Y6K L; 3UEZ E; 4FA8 E; 5A2N A; 4A3K D; 3VA2 A; 4A3G D; 4NKQ C; 5D59 A; 3PO2 D; 4ZW9 A; 1F45 B; 1RCB A; 2Q7N B; 4WRL B; 4IKV A; 4TPG A; 1BGE A; 1ALU A; 4JR9 A; 5D71 A; 1M4A A; 5EQI A; 2B90 A; 1KF9 A; 2Y5Y A; 4JA3 A; 3NCB A; 4D2D A; 1IRL A; 2HYM B; 5TS9 A; 1IK0 A; 1BCN A; 3HMX B; 1HUL A; 1ITF A; 3BES L; 4Q65 A; 1PV6 A; 1IJZ A; 4GBY A; 1PV7 A; 3N06 A; 4U4T A; 4Z5R D; 4DKD A; 1B5L A; 3HOY D; 5C4X D; 2L3Y A; 3B5K A; 2L3O A; 1EKU A; 3DI2 A; 1HUW A; 3BPN A; 1PW4 A; 4XNJ A; 4A3C D; 4YDY I; 2ERJ D; 4IKZ A; 1Y6N L; 3HHC A; 3OG6 A; 2ILK A; 1AX8 A; 4APS A; 1IAR A; 3EW3 A; 4QIQ A; 4XNI A; 3UF5 A; 1A22 A; 4OH3 A; 4U4W A; 3L5W I; 5IYC D; 4O6K A; 2CYK A; 4J4L C; 5EQH A; 1EER A; 2R93 D; 1ILK A; 4LEP A; 4YBQ A; 4UVM A; 2H24 A; 4YUE C; 2JA5 D; 3MZG A; 1HZI A; 2PSM A; 4BBR D; 1Y6M L; 4ZYR A; 4GS7 A; 3UX9 A; 3I4N D; 1M4C A; 2B8U A; 1GA3 A; 4EXP A; 1INR A; 5EQG A; 2IL6 A; 1HIK A; 2C35 A; 1M49 A; 3NPZ A; 4BY1 D; 2OQP A; 4GRW A; 1N1F A; 2B8Y A; 4NI9 A; 1EXZ A; 3O7Q A; 4BBS D; 4TPH A; 2VUM D; 3UF2 A; 4DKC A; 3I4M D; 2XUT A; 1ETE A; 2LAG A; 1JLI A; 1V7M V; 3SE4 B; 1QVN A; 3QB1 A; 3H0G D; 5D22 A; 1PW6 A; 1BP3 A; 1M48 A; 2Z3R A; 5IYB D; 1BGD A; 2R92 D; 4MHL A; 1SCF A; 1BUY A; 5C3E D; 4A3D D; 5L6Y C; 5D28 B; 4IKW A; 2B91 A; 2D48 A; 1IL6 A; 1Y1V D; 1HGU A; 1HIJ A; 1BGC A; 1A7M A; 1D9G A; 2CFQ A; 4A3L D; 2Q14 A; 2E9W C; 4BY7 D; 2B8Z A; 1CD9 A; 2JA8 D; 1Z92 A; 4ZWB A; 2Q98 A; 3QAZ A; 5D6K A; 3DUH C; 2INT A; 5D70 A; 1LKI A; 3OG4 A; 5C65 A; 3D85 C; 5IP7 D; 5IYD D; 4JRE A; 5GXB A; 3H3V E; 1PGR A; 3QWR B; 1M47 A; 2XQB A; 4I77 Z; 2D9Q A; 3DLQ I; 5FUC A; 4OAA A; 1D9C A; 3INK C; 1CSG A; 1Y1W D; 3D87 A; 3EJJ A; 4IKX A; 1LK3 A; 4A3F D; 5C7X A; 5D58 A; 4EXN A; 3IRH A; 1FG9 A; 1VLK A; 1FYH A; 4GBZ A; 4D2B A; 4TPJ A; 1Z7C A; 1RFB A; 3NCC A; 2V8N A; 1V7N V; 3PO3 D; 2B8X A; 1WCM D; 1ITI A; 5FHX A; 4ZF7 A; 1ITM A; 3LB6 B; 1WU3 I; 2R7Z D; 1GNC A; 2KZ1 A; 5LQB A; 3DI3 A; 4YQX A; 4CNI C; 3QB7 A; 3LB6 A; 3HOX D; 4IU8 A; 4U4V A; 1M4B A; 3PIV A; 2LMS A; 3WCY I; 1EMR A; 4IKY A; 4X51 A; 1I1R B; 4J05 A; 4DKF A; 1BBN A; 3AYH A; 4YPG C; 1AU1 A; 1M4R A; 1PVH B; 1LQS L; 4A3M D; 2O26 A; 1CN4 C; 4D2C A; 4PYP A; 4O9H A; 3DGC L; 1HWG A; 4NN7 A; 1CNT 1; 5IP9 D; 3O7P A; 2JA6 D; 3Q1S I; 4A3B D; 5E4E A; 4A3I D; 1PY2 A; 3N0P A; 3S9D A; 5KNH I; 3NCF A; 5A2O A; 4BXX D; 4A3E D; 4ZWC A; 2B63 D; 1J7V L; 4PS4 A; 1EVS A; 2JA7 D; 3PIW A; 2O27 A; 3HOW D; 4NI7 A; 2GMF A; 4A3J D; 3QT2 C; 1RHG A; 5FLM D; 5C44 D; 3OQ3 A; 2CFP A; 4A93 D; #chains in the Genus database with same CATH homology 3H0G D; 5D22 A; 1V7N V; 5D72 A; 1PW6 A; 1BP3 A; 1M48 A; 3PO3 D; 2B8X A; 2Z3R A; 5IYB D; 1WCM D; 3L5X A; 4NEJ A; 1ITI A; 1BGD A; 3HOZ D; 3BPN A; 2R92 D; 4MHL A; 5FHX A; 1SCF A; 4A3C D; 2O6I A; 4NEM A; 4ZF7 A; 1ITM A; 3HHR A; 1WU3 I; 2ERJ D; 2Z3Q A; 3LB6 B; 4YDY I; 2R7Z D; 3G6D A; 1CYL A; 1BUY A; 4RS1 A; 1P9M B; 1Y6N L; 4LRL A; 5C3E D; 4A3D D; 1AXI A; 2KZ1 A; 3BPL A; 3HHC A; 4NN6 A; 3DI3 A; 5L6Y C; 5LQB A; 5D28 B; 3OG6 A; 4YQX A; 2B91 A; 4CNI C; 2D48 A; 1IL6 A; 1Y1V D; 3LB6 A; 1HGU A; 1HIJ A; 3QB7 A; 3HOX D; 2ILK A; 1AX8 A; 1ITL A; 1BGC A; 3HOU D; 3D48 P; 1IAR A; 3EW3 A; 4DOH A; 1D9G A; 4ZS7 A; 1A7M A; 3UF5 A; 2B5I A; 4A3L D; 1M4B A; 1A22 A; 1YKB A; 2Q14 A; 3PIV A; 1RW5 A; 3G9V B; 2E9W C; 2LMS A; 3WCY I; 4BY7 D; 3L5W I; 5IYC D; 1EMR A; 1Y14 A; 2CYK A; 4O6K A; 1HWH A; 4J4L C; 3HOV D; 2B8Z A; 4X51 A; 1I1R B; 1CD9 A; 1EER A; 4NN5 A; 2JA8 D; 1Z92 A; 4DKF A; 1ILK A; 1BBN A; 3NCE A; 3FKI D; 3SE3 B; 1F6F A; 3AYH A; 3TGX B; 4DKE A; 4YPG C; 1AU1 A; 2H24 A; 1M4R A; 2Q98 A; 3BPO A; 3QAZ A; 4YUE C; 1PVH B; 2JA5 D; 1NBP A; 3MZG A; 1LQS L; 1HZI A; 2PSM A; 2INT A; 3DUH C; 5D70 A; 1Y6K L; 4BBR D; 4A3M D; 1LKI A; 3OG4 A; 1Y6M L; 1CN4 C; 2O26 A; 3UEZ E; 4FA8 E; 4O9H A; 4A3K D; 3DGC L; 1HWG A; 4NN7 A; 4GS7 A; 3VA2 A; 4A3G D; 4NKQ C; 1CNT 1; 3D85 C; 5IP9 D; 3PO2 D; 3UX9 A; 5IP7 D; 5IYD D; 3I4N D; 1M4C A; 1F45 B; 2B8U A; 3H3V E; 2JA6 D; 1GA3 A; 1PGR A; 4EXP A; 1INR A; 3QWR B; 1M47 A; 1RCB A; 3Q1S I; 4A3B D; 2Q7N B; 4WRL B; 2XQB A; 2IL6 A; 4I77 Z; 1GNC A; 1HIK A; 2D9Q A; 1BGE A; 1ALU A; 2C35 A; 3DLQ I; 1M49 A; 3NPZ A; 5E4E A; 5D71 A; 4A3I D; 1PY2 A; 1M4A A; 5FUC A; 3N0P A; 4BY1 D; 3S9D A; 1D9C A; 2B90 A; 2OQP A; 3INK C; 4GRW A; 5KNH I; 1CSG A; 3NCF A; 1Y1W D; 4BXX D; 1KF9 A; 3D87 A; 3NCB A; 1IRL A; 1N1F A; 4A3E D; 2B8Y A; 2HYM B; 2B63 D; 5TS9 A; 1EXZ A; 1J7V L; 3HMX B; 1HUL A; 3EJJ A; 4PS4 A; 1LK3 A; 4NI9 A; 4BBS D; 1BCN A; 4A3F D; 1EVS A; 1ITF A; 2JA7 D; 3PIW A; 3BES L; 5C7X A; 2VUM D; 1IK0 A; 1IJZ A; 2O27 A; 3UF2 A; 4EXN A; 3IRH A; 2R93 D; 3N06 A; 1FG9 A; 3HOW D; 4NI7 A; 1VLK A; 4Z5R D; 4DKC A; 1B5L A; 4DKD A; 3I4M D; 3HOY D; 2GMF A; 2L3Y A; 5C4X D; 4A3J D; 1ETE A; 3B5K A; 3QT2 C; 1RHG A; 1FYH A; 2L3O A; 5FLM D; 2LAG A; 3OQ3 A; 5C44 D; 1Z7C A; 1RFB A; 1EKU A; 1JLI A; 1V7M V; 3NCC A; 3DI2 A; 3SE4 B; 1QVN A; 1HUW A; 4A93 D; 3QB1 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
