1E7P | Genus

Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	90
sequence length	254
structure length	254
Chain Sequence	MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFQLDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYKRTH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 254 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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254 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Wolinella succinogenes
publication title	A Third Crystal Form of Wolinella Succinogenes Quinol:Fumarate Reductase Reveals Domain Closure at the Site of Fumarate Reduction pubmed doi rcsb
molecule keywords	Fumarate reductase flavoprotein subunit
total genus	90
structure length	254
sequence length	254
chains with identical sequence	F, I, L
ec nomenclature
pdb deposition date	2000-09-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01127	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	1e7pC00

1ZP0C 2WU5D 3P4QD 4YTNC 3VR8D 3AEBC 1KF6C 2BS3C 1NENC 4YXDC 1E7PC 2FBWC 1ZP0D 3AE3D 4YSXD 4YTND 1KF6D 1NEND 4YXDD 3P4SC 1KFYC 2WU5C 5C2TD 1L0VC 3VRBD 4YSZD 3AEFC 3CIRC 3SFDC 3P4SD 2WU2C 1KFYD 3AEEC 3AE3C 4YSXC 4KX6C 2BS2C 3AECC 1L0VD 3AE5D 3AEFD 3CIRD 3SFDD 2WU2D 3AEED 3AE6D 3AE7D 5C2TC 4KX6D 3AE2D 1QLBC 3AECD 3VRBC 3AEDC 4YT0D 3AEGC 3ABVC 4YSZC 3P4RC 1YQ3C 3SFEC 2ACZD 2WDVD 5C3JC 3AEDD 3AEGD 3ABVD 3AE5C 3VRAC 3P4RD 1YQ3D 4YSYC 2B76C 3AE8C 3AE6C 3SFED 3AE7C 3AE2C 5C3JD 4YT0C 2WS3C 3VRAD 4YTMC 4YSYD 2B76D 3AE8D 2ACZC 1ZOYD 2WDVC 2H88D 3P4PD 2WS3D 4YTPC 4YTMD 2WDRD 2WQYD 3VR9C 1YQ4C 2H89C 3AE4C 3AEAC 4YTPD 3VR9D 1YQ4D 1ZOYC 2BS4C 3AE1D 2WDQC 1NEKC 2WP9C 3AE9C 2H89D 2H88C 3AE4D 3P4PC 3AEAD 3AEBD 2WDRC 2WQYC 2FBWD 2WDQD 1NEKD 2WP9D 3AE9D 3P4QC 3VR8C 3AE1C
chains in the Genus database with same CATH superfamily

1ZP0C 2WU5D 3P4QD 4YTNC 3VR8D 3AEBC 1KF6C 2BS3C 1NENC 4YXDC 1E7PC 2FBWC 1ZP0D 3AE3D 4YSXD 4YTND 4DDIA 1KF6D 1NEND 4YXDD 3P4SC 1KFYC 2WU5C 3VONA 5C2TD 1L0VC 3VRBD 4YSZD 3AEFC 3CIRC 3SFDC 3P4SD 2WU2C 1KFYD 3AEEC 3AE3C 4YSXC 4KX6C 2BS2C 3AECC 1L0VD 3AE5D 3AEFD 3CIRD 3SFDD 4DHZA 2WU2D 3AEED 3AE6D 3AE7D 5C2TC 4KX6D 3AE2D 1QLBC 3AECD 3VRBC 3AEDC 4YT0D 3AEGC 3ABVC 4YSZC 3P4RC 1YQ3C 3SFEC 2ACZD 2WDVD 5C3JC 3AEDD 3AEGD 3ABVD 3AE5C 3VRAC 3P4RD 1YQ3D 4YSYC 2B76C 3AE8C 3AE6C 3SFED 3AE7C 3AE2C 5C3JD 4YT0C 2WS3C 3VRAD 4YTMC 4FJVA 4YSYD 2B76D 3AE8D 2ACZC 4DDGA 1ZOYD 2WDVC 4LDTA 2H88D 3P4PD 2WS3D 4YTPC 4YTMD 2WDRD 2WQYD 3VR9C 1YQ4C 2H89C 3AE4C 3AEAC 4YTPD 3VR9D 1YQ4D 1ZOYC 2BS4C 3AE1D 2WDQC 1NEKC 2WP9C 3AE9C 2H89D 2H88C 3AE4D 3P4PC 3AEAD 3AEBD 2WDRC 2WQYC 2FBWD 2WDQD 1NEKD 2WP9D 3AE9D 1TFFA 3P4QC 4DHIB 3VR8C 4DHJA 2ZFYA 4I6LA 3AE1C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1ZP0 C;  2WU5 D;  3P4Q D;  4YTN C;  3VR8 D;  3AEB C;  1KF6 C;  2BS3 C;  1NEN C;  4YXD C;  1E7P C;  2FBW C;  1ZP0 D;  3AE3 D;  4YSX D;  4YTN D;  1KF6 D;  1NEN D;  4YXD D;  3P4S C;  1KFY C;  2WU5 C;  5C2T D;  1L0V C;  3VRB D;  4YSZ D;  3AEF C;  3CIR C;  3SFD C;  3P4S D;  2WU2 C;  1KFY D;  3AEE C;  3AE3 C;  4YSX C;  4KX6 C;  2BS2 C;  3AEC C;  1L0V D;  3AE5 D;  3AEF D;  3CIR D;  3SFD D;  2WU2 D;  3AEE D;  3AE6 D;  3AE7 D;  5C2T C;  4KX6 D;  3AE2 D;  1QLB C;  3AEC D;  3VRB C;  3AED C;  4YT0 D;  3AEG C;  3ABV C;  4YSZ C;  3P4R C;  1YQ3 C;  3SFE C;  2ACZ D;  2WDV D;  5C3J C;  3AED D;  3AEG D;  3ABV D;  3AE5 C;  3VRA C;  3P4R D;  1YQ3 D;  4YSY C;  2B76 C;  3AE8 C;  3AE6 C;  3SFE D;  3AE7 C;  3AE2 C;  5C3J D;  4YT0 C;  2WS3 C;  3VRA D;  4YTM C;  4YSY D;  2B76 D;  3AE8 D;  2ACZ C;  1ZOY D;  2WDV C;  2H88 D;  3P4P D;  2WS3 D;  4YTP C;  4YTM D;  2WDR D;  2WQY D;  3VR9 C;  1YQ4 C;  2H89 C;  3AE4 C;  3AEA C;  4YTP D;  3VR9 D;  1YQ4 D;  1ZOY C;  2BS4 C;  3AE1 D;  2WDQ C;  1NEK C;  2WP9 C;  3AE9 C;  2H89 D;  2H88 C;  3AE4 D;  3P4P C;  3AEA D;  3AEB D;  2WDR C;  2WQY C;  2FBW D;  2WDQ D;  1NEK D;  2WP9 D;  3AE9 D;  3P4Q C;  3VR8 C;  3AE1 C; 
#chains in the Genus database with same CATH topology
 1ZP0 C;  2WU5 D;  3P4Q D;  4YTN C;  3VR8 D;  3AEB C;  1KF6 C;  2BS3 C;  1NEN C;  4YXD C;  1E7P C;  2FBW C;  1ZP0 D;  3AE3 D;  4YSX D;  4YTN D;  4DDI A;  1KF6 D;  1NEN D;  4YXD D;  3P4S C;  1KFY C;  2WU5 C;  3VON A;  5C2T D;  1L0V C;  3VRB D;  4YSZ D;  3AEF C;  3CIR C;  3SFD C;  3P4S D;  2WU2 C;  1KFY D;  3AEE C;  3AE3 C;  4YSX C;  4KX6 C;  2BS2 C;  3AEC C;  1L0V D;  3AE5 D;  3AEF D;  3CIR D;  3SFD D;  4DHZ A;  2WU2 D;  3AEE D;  3AE6 D;  3AE7 D;  5C2T C;  4KX6 D;  3AE2 D;  1QLB C;  3AEC D;  3VRB C;  3AED C;  4YT0 D;  3AEG C;  3ABV C;  4YSZ C;  3P4R C;  1YQ3 C;  3SFE C;  2ACZ D;  2WDV D;  5C3J C;  3AED D;  3AEG D;  3ABV D;  3AE5 C;  3VRA C;  3P4R D;  1YQ3 D;  4YSY C;  2B76 C;  3AE8 C;  3AE6 C;  3SFE D;  3AE7 C;  3AE2 C;  5C3J D;  4YT0 C;  2WS3 C;  3VRA D;  4YTM C;  4FJV A;  4YSY D;  2B76 D;  3AE8 D;  2ACZ C;  4DDG A;  1ZOY D;  2WDV C;  4LDT A;  2H88 D;  3P4P D;  2WS3 D;  4YTP C;  4YTM D;  2WDR D;  2WQY D;  3VR9 C;  1YQ4 C;  2H89 C;  3AE4 C;  3AEA C;  4YTP D;  3VR9 D;  1YQ4 D;  1ZOY C;  2BS4 C;  3AE1 D;  2WDQ C;  1NEK C;  2WP9 C;  3AE9 C;  2H89 D;  2H88 C;  3AE4 D;  3P4P C;  3AEA D;  3AEB D;  2WDR C;  2WQY C;  2FBW D;  2WDQ D;  1NEK D;  2WP9 D;  3AE9 D;  1TFF A;  3P4Q C;  4DHI B;  3VR8 C;  4DHJ A;  2ZFY A;  4I6L A;  3AE1 C; 
#chains in the Genus database with same CATH homology
 1ZP0 C;  2WU5 D;  3P4Q D;  4YTN C;  3VR8 D;  3AEB C;  1KF6 C;  2BS3 C;  1NEN C;  4YXD C;  1E7P C;  2FBW C;  1ZP0 D;  3AE3 D;  4YSX D;  4YTN D;  1KF6 D;  1NEN D;  4YXD D;  3P4S C;  1KFY C;  2WU5 C;  5C2T D;  1L0V C;  3VRB D;  4YSZ D;  3AEF C;  3CIR C;  3SFD C;  3P4S D;  2WU2 C;  1KFY D;  3AEE C;  3AE3 C;  4YSX C;  4KX6 C;  2BS2 C;  3AEC C;  1L0V D;  3AE5 D;  3AEF D;  3CIR D;  3SFD D;  2WU2 D;  3AEE D;  3AE6 D;  3AE7 D;  5C2T C;  4KX6 D;  3AE2 D;  1QLB C;  3AEC D;  3VRB C;  3AED C;  4YT0 D;  3AEG C;  3ABV C;  4YSZ C;  3P4R C;  1YQ3 C;  3SFE C;  2ACZ D;  2WDV D;  5C3J C;  3AED D;  3AEG D;  3ABV D;  3AE5 C;  3VRA C;  3P4R D;  1YQ3 D;  4YSY C;  2B76 C;  3AE8 C;  3AE6 C;  3SFE D;  3AE7 C;  3AE2 C;  5C3J D;  4YT0 C;  2WS3 C;  3VRA D;  4YTM C;  4YSY D;  2B76 D;  3AE8 D;  2ACZ C;  1ZOY D;  2WDV C;  2H88 D;  3P4P D;  2WS3 D;  4YTP C;  4YTM D;  2WDR D;  2WQY D;  3VR9 C;  1YQ4 C;  2H89 C;  3AE4 C;  3AEA C;  4YTP D;  3VR9 D;  1YQ4 D;  1ZOY C;  2BS4 C;  3AE1 D;  2WDQ C;  1NEK C;  2WP9 C;  3AE9 C;  2H89 D;  2H88 C;  3AE4 D;  3P4P C;  3AEA D;  3AEB D;  2WDR C;  2WQY C;  2FBW D;  2WDQ D;  1NEK D;  2WP9 D;  3AE9 D;  3P4Q C;  3VR8 C;  3AE1 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1E7PC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations