2WDRC

E. coli succinate:quinone oxidoreductase (sqr) with pentachlorophenol bound
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
122
structure length
122
Chain Sequence
QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
publication title Structure of Escherichia Coli Succinate:Quinone Oxidoreductase with an Occupied and Empty Quinone- Binding Site.
pubmed doi rcsb
source organism Escherichia coli
total genus 48
structure length 122
sequence length 122
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wdrC00
3AE4D 2ACZD 4YSZD 1QLBC 3VR9D 3P4QC 2FBWC 3P4SD 3AE1C 1NEKC 1ZOYC 3AE2C 4YSYD 3P4RD 3P4PC 3AEDC 2B76C 1YQ4C 2WDVD 3AE9D 3AE6C 3AEGD 2ACZC 2WU2D 1YQ3C 2WQYD 2BS2C 4YT0D 3VR9C 4YTPD 1KFYC 4YTMD 3P4SC 4YSYC 5C2TC 2WDQC 2WS3D 2H89D 2BS4C 3SFDD 1ZP0D 3AE9C 3AE3C 3ABVC 3AE8D 3AE7D 3CIRD 4YXDD 2WP9D 3AE5D 4YTND 4YSXC 3SFED 2H88D 3AEED 2WS3C 3AE4C 1L0VD 1KF6D 3VRAD 4YSZC 2WU5D 3AEBD 3P4RC 1E7PC 3VR8D 4KX6D 3AEFD 5C3JD 2BS3C 2WDVC 2WDRD 2WU2C 3AEGC 2WQYC 1NEND 4YT0C 4YTPC 4YTMC 3AECD 2H89C 3AEFC 3P4QD 2FBWD 3SFDC 3AE2D 1NEKD 1ZOYD 1ZP0C 3AE1D 3P4PD 3AEDD 3VRBC 3AE8C 3AE7C 2B76D 3CIRC 4YXDC 2WP9C 3AE5C 1YQ4D 4YTNC 3SFEC 3AECC 2H88C 3AEEC 3AE6D 1YQ3D 1KFYD 1L0VC 3AEAD 1KF6C 5C2TD 3VRAC 2WDQD 3VRBD 2WU5C 3AEBC 3VR8C 4KX6C 3ABVD 3AE3D 5C3JC 2WDRC 3AEAC 4YSXD 1NENC
chains in the Genus database with same CATH superfamily
3AE4D 2ACZD 4YSZD 1QLBC 3VR9D 3P4QC 2FBWC 3P4SD 3AE1C 1NEKC 1ZOYC 3AE2C 4YSYD 3P4RD 3P4PC 3AEDC 2B76C 1YQ4C 2WDVD 3AE9D 3AE6C 3AEGD 2ACZC 2WU2D 1YQ3C 2WQYD 4DHJA 2BS2C 4YT0D 3VR9C 4YTPD 1KFYC 4DHZA 4YTMD 3P4SC 4YSYC 5C2TC 2WDQC 2WS3D 2H89D 2BS4C 4DDGA 3VONA 3SFDD 1ZP0D 4LDTA 3AE9C 3AE3C 3ABVC 3AE8D 3AE7D 3CIRD 4YXDD 2WP9D 3AE5D 4YTND 4YSXC 3SFED 2H88D 3AEED 2WS3C 3AE4C 1L0VD 1KF6D 3VRAD 4YSZC 2WU5D 3AEBD 3P4RC 4FJVA 1E7PC 3VR8D 4KX6D 3AEFD 5C3JD 2BS3C 2WDVC 2WDRD 2WU2C 3AEGC 2WQYC 1NEND 4YT0C 4YTPC 4YTMC 4DHIB 3AECD 2H89C 3AEFC 3P4QD 2FBWD 3SFDC 3AE2D 1NEKD 1ZOYD 1ZP0C 3AE1D 3P4PD 3AEDD 3VRBC 3AE8C 3AE7C 2B76D 3CIRC 4YXDC 2WP9C 3AE5C 1YQ4D 4YTNC 3SFEC 3AECC 2H88C 3AEEC 3AE6D 1YQ3D 4I6LA 4DDIA 1KFYD 1L0VC 3AEAD 1KF6C 1TFFA 3VRAC 5C2TD 2WDQD 3VRBD 2WU5C 3AEBC 3VR8C 4KX6C 2ZFYA 3ABVD 3AE3D 5C3JC 2WDRC 3AEAC 4YSXD 1NENC
chains in the Genus database with same CATH topology
3AE4D 2ACZD 4YSZD 1QLBC 3VR9D 3P4QC 2FBWC 3P4SD 3AE1C 1NEKC 1ZOYC 3AE2C 4YSYD 3P4RD 3P4PC 3AEDC 2B76C 1YQ4C 2WDVD 3AE9D 3AE6C 3AEGD 2ACZC 2WU2D 1YQ3C 2WQYD 2BS2C 4YT0D 3VR9C 4YTPD 1KFYC 4YTMD 3P4SC 4YSYC 5C2TC 2WDQC 2WS3D 2H89D 2BS4C 3SFDD 1ZP0D 3AE9C 3AE3C 3ABVC 3AE8D 3AE7D 3CIRD 4YXDD 2WP9D 3AE5D 4YTND 4YSXC 3SFED 2H88D 3AEED 2WS3C 3AE4C 1L0VD 1KF6D 3VRAD 4YSZC 2WU5D 3AEBD 3P4RC 1E7PC 3VR8D 4KX6D 3AEFD 5C3JD 2BS3C 2WDVC 2WDRD 2WU2C 3AEGC 2WQYC 1NEND 4YT0C 4YTPC 4YTMC 3AECD 2H89C 3AEFC 3P4QD 2FBWD 3SFDC 3AE2D 1NEKD 1ZOYD 1ZP0C 3AE1D 3P4PD 3AEDD 3VRBC 3AE8C 3AE7C 2B76D 3CIRC 4YXDC 2WP9C 3AE5C 1YQ4D 4YTNC 3SFEC 3AECC 2H88C 3AEEC 3AE6D 1YQ3D 1KFYD 1L0VC 3AEAD 1KF6C 5C2TD 3VRAC 2WDQD 3VRBD 2WU5C 3AEBC 3VR8C 4KX6C 3ABVD 3AE3D 5C3JC 2WDRC 3AEAC 4YSXD 1NENC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE4 D;  2ACZ D;  4YSZ D;  1QLB C;  3VR9 D;  3P4Q C;  2FBW C;  3P4S D;  3AE1 C;  1NEK C;  1ZOY C;  3AE2 C;  4YSY D;  3P4R D;  3P4P C;  3AED C;  2B76 C;  1YQ4 C;  2WDV D;  3AE9 D;  3AE6 C;  3AEG D;  2ACZ C;  2WU2 D;  1YQ3 C;  2WQY D;  2BS2 C;  4YT0 D;  3VR9 C;  4YTP D;  1KFY C;  4YTM D;  3P4S C;  4YSY C;  5C2T C;  2WDQ C;  2WS3 D;  2H89 D;  2BS4 C;  3SFD D;  1ZP0 D;  3AE9 C;  3AE3 C;  3ABV C;  3AE8 D;  3AE7 D;  3CIR D;  4YXD D;  2WP9 D;  3AE5 D;  4YTN D;  4YSX C;  3SFE D;  2H88 D;  3AEE D;  2WS3 C;  3AE4 C;  1L0V D;  1KF6 D;  3VRA D;  4YSZ C;  2WU5 D;  3AEB D;  3P4R C;  1E7P C;  3VR8 D;  4KX6 D;  3AEF D;  5C3J D;  2BS3 C;  2WDV C;  2WDR D;  2WU2 C;  3AEG C;  2WQY C;  1NEN D;  4YT0 C;  4YTP C;  4YTM C;  3AEC D;  2H89 C;  3AEF C;  3P4Q D;  2FBW D;  3SFD C;  3AE2 D;  1NEK D;  1ZOY D;  1ZP0 C;  3AE1 D;  3P4P D;  3AED D;  3VRB C;  3AE8 C;  3AE7 C;  2B76 D;  3CIR C;  4YXD C;  2WP9 C;  3AE5 C;  1YQ4 D;  4YTN C;  3SFE C;  3AEC C;  2H88 C;  3AEE C;  3AE6 D;  1YQ3 D;  1KFY D;  1L0V C;  3AEA D;  1KF6 C;  5C2T D;  3VRA C;  2WDQ D;  3VRB D;  2WU5 C;  3AEB C;  3VR8 C;  4KX6 C;  3ABV D;  3AE3 D;  5C3J C;  2WDR C;  3AEA C;  4YSX D;  1NEN C; 
#chains in the Genus database with same CATH topology
 3AE4 D;  2ACZ D;  4YSZ D;  1QLB C;  3VR9 D;  3P4Q C;  2FBW C;  3P4S D;  3AE1 C;  1NEK C;  1ZOY C;  3AE2 C;  4YSY D;  3P4R D;  3P4P C;  3AED C;  2B76 C;  1YQ4 C;  2WDV D;  3AE9 D;  3AE6 C;  3AEG D;  2ACZ C;  2WU2 D;  1YQ3 C;  2WQY D;  4DHJ A;  2BS2 C;  4YT0 D;  3VR9 C;  4YTP D;  1KFY C;  4DHZ A;  4YTM D;  3P4S C;  4YSY C;  5C2T C;  2WDQ C;  2WS3 D;  2H89 D;  2BS4 C;  4DDG A;  3VON A;  3SFD D;  1ZP0 D;  4LDT A;  3AE9 C;  3AE3 C;  3ABV C;  3AE8 D;  3AE7 D;  3CIR D;  4YXD D;  2WP9 D;  3AE5 D;  4YTN D;  4YSX C;  3SFE D;  2H88 D;  3AEE D;  2WS3 C;  3AE4 C;  1L0V D;  1KF6 D;  3VRA D;  4YSZ C;  2WU5 D;  3AEB D;  3P4R C;  4FJV A;  1E7P C;  3VR8 D;  4KX6 D;  3AEF D;  5C3J D;  2BS3 C;  2WDV C;  2WDR D;  2WU2 C;  3AEG C;  2WQY C;  1NEN D;  4YT0 C;  4YTP C;  4YTM C;  4DHI B;  3AEC D;  2H89 C;  3AEF C;  3P4Q D;  2FBW D;  3SFD C;  3AE2 D;  1NEK D;  1ZOY D;  1ZP0 C;  3AE1 D;  3P4P D;  3AED D;  3VRB C;  3AE8 C;  3AE7 C;  2B76 D;  3CIR C;  4YXD C;  2WP9 C;  3AE5 C;  1YQ4 D;  4YTN C;  3SFE C;  3AEC C;  2H88 C;  3AEE C;  3AE6 D;  1YQ3 D;  4I6L A;  4DDI A;  1KFY D;  1L0V C;  3AEA D;  1KF6 C;  1TFF A;  3VRA C;  5C2T D;  2WDQ D;  3VRB D;  2WU5 C;  3AEB C;  3VR8 C;  4KX6 C;  2ZFY A;  3ABV D;  3AE3 D;  5C3J C;  2WDR C;  3AEA C;  4YSX D;  1NEN C; 
#chains in the Genus database with same CATH homology
 3AE4 D;  2ACZ D;  4YSZ D;  1QLB C;  3VR9 D;  3P4Q C;  2FBW C;  3P4S D;  3AE1 C;  1NEK C;  1ZOY C;  3AE2 C;  4YSY D;  3P4R D;  3P4P C;  3AED C;  2B76 C;  1YQ4 C;  2WDV D;  3AE9 D;  3AE6 C;  3AEG D;  2ACZ C;  2WU2 D;  1YQ3 C;  2WQY D;  2BS2 C;  4YT0 D;  3VR9 C;  4YTP D;  1KFY C;  4YTM D;  3P4S C;  4YSY C;  5C2T C;  2WDQ C;  2WS3 D;  2H89 D;  2BS4 C;  3SFD D;  1ZP0 D;  3AE9 C;  3AE3 C;  3ABV C;  3AE8 D;  3AE7 D;  3CIR D;  4YXD D;  2WP9 D;  3AE5 D;  4YTN D;  4YSX C;  3SFE D;  2H88 D;  3AEE D;  2WS3 C;  3AE4 C;  1L0V D;  1KF6 D;  3VRA D;  4YSZ C;  2WU5 D;  3AEB D;  3P4R C;  1E7P C;  3VR8 D;  4KX6 D;  3AEF D;  5C3J D;  2BS3 C;  2WDV C;  2WDR D;  2WU2 C;  3AEG C;  2WQY C;  1NEN D;  4YT0 C;  4YTP C;  4YTM C;  3AEC D;  2H89 C;  3AEF C;  3P4Q D;  2FBW D;  3SFD C;  3AE2 D;  1NEK D;  1ZOY D;  1ZP0 C;  3AE1 D;  3P4P D;  3AED D;  3VRB C;  3AE8 C;  3AE7 C;  2B76 D;  3CIR C;  4YXD C;  2WP9 C;  3AE5 C;  1YQ4 D;  4YTN C;  3SFE C;  3AEC C;  2H88 C;  3AEE C;  3AE6 D;  1YQ3 D;  1KFY D;  1L0V C;  3AEA D;  1KF6 C;  5C2T D;  3VRA C;  2WDQ D;  3VRB D;  2WU5 C;  3AEB C;  3VR8 C;  4KX6 C;  3ABV D;  3AE3 D;  5C3J C;  2WDR C;  3AEA C;  4YSX D;  1NEN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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