1I74A

Streptococcus mutans inorganic pyrophosphatase
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
309
structure length
309
Chain Sequence
SKILVFGHQNPDSDAIGSSMAYAYLKRQLGVDAQAVALGNPNEETAFVLDYFGIQAPPVVKSAQAEGAKQVILTDHNEFQQSIADIREVEVVEVVDHHRVANFETANPLYMRLEPVGSASSIVYRLYKENGVAIPKEIAGVMLSGLISDTLLLKSPTTHASDPAVAEDLAKIAGVDLQEYGLAMLKAGTNLASKTAAQLVDIDAKTFELNGSQVRVAQVNTVDINEVLERQNEIEEAIKASQAANGYSDFVLMITDILNSNSEILALGNNTDKVEAAFNFTLKNNHAFLAGAVSRKKQVVPQLTESFNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Streptococcus mutans
publication title Crystal structure of Streptococcus mutans pyrophosphatase: a new fold for an old mechanism.
pubmed doi rcsb
molecule keywords PROBABLE MANGANESE-DEPENDENT INORGANIC PYROPHOSPHATASE
total genus 97
structure length 309
sequence length 309
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2001-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1i74A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1i74A01
1K20A 1I74A 1WPPA 4RPAA 2HAWA 2ENXA 2IW4A 2EB0A 1K23A 2QB8A 3DEVA 1WPMA 4LS9A 1WPNA 2QB6A 4PY9A 2QB7A 3W5WA
chains in the Genus database with same CATH superfamily
2IW4A 1K23A 2KW7A 2YMAA 2H9FA 4K7XA 1XUAA 4JUUA 2AZPA 1WPPA 2ENXA 4J9XA 5M47A 3EJXA 4PY9A 3G7KA 3W5WA 4K7GB 1U1XA 2ZXPA 2ZXOA 4JD7A 1S7JA 4RPAA 2HAWA 5H2GA 1U1VA 5GL3A 1GQZA 4DWZA 5ANPA 5H2YA 4GL6A 2QB6A 2GKJA 2MPBA 2Q9JA 3ICJA 4J9WA 4Q2HA 1SDJA 4IK0A 4Q60A 5GL2A 4OA3A 1XUBA 2Q9HA 5GL4A 2PVZA 3IGHX 5HA4A 2GKEA 2ZXRA 2QB8A 4LB0A 4K8LA 1WPNA 3G98A 1W62A 4IJZA 2EB0A 1QY9A 1IR6A 1YM5A 2KPTA 1U1WA 4JCIA 1TM0A 2ZVFA 5GKXA 2LT2A 2QB7A 3PTJA 1W61A 2OTNA 2PW0A 3WQZA 4LG3A 1K20A 3PW9A 3DEVA 1WPMA 3EKMA 1BWZA 3EDNA 1I74A 1U0KA 4DUNA 4LS9A 4JBDA 5IWEA 1QYAA 4FC5A 1T6KA 3FVEA 3PVHA
chains in the Genus database with same CATH topology
2IW4A 1K23A 2KW7A 2YMAA 2H9FA 4K7XA 1XUAA 4JUUA 2AZPA 1WPPA 2ENXA 4J9XA 5M47A 3EJXA 4PY9A 3G7KA 3W5WA 4K7GB 1U1XA 2ZXPA 2ZXOA 4JD7A 1S7JA 4RPAA 2HAWA 5H2GA 1U1VA 5GL3A 1GQZA 4DWZA 5ANPA 5H2YA 4GL6A 2QB6A 2GKJA 2MPBA 2Q9JA 3ICJA 4J9WA 4Q2HA 1SDJA 4IK0A 4Q60A 5GL2A 4OA3A 1XUBA 2Q9HA 5GL4A 2PVZA 3IGHX 5HA4A 2GKEA 2ZXRA 2QB8A 4LB0A 4K8LA 1WPNA 3G98A 1W62A 4IJZA 2EB0A 1QY9A 1IR6A 1YM5A 2KPTA 1U1WA 4JCIA 1TM0A 2ZVFA 5GKXA 2LT2A 2QB7A 3PTJA 1W61A 2OTNA 2PW0A 3WQZA 4LG3A 1K20A 3PW9A 3DEVA 1WPMA 3EKMA 1BWZA 3EDNA 1I74A 1U0KA 4DUNA 4LS9A 4JBDA 5IWEA 1QYAA 4FC5A 1T6KA 3FVEA 3PVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K20 A;  1I74 A;  1WPP A;  4RPA A;  2HAW A;  2ENX A;  2IW4 A;  2EB0 A;  1K23 A;  2QB8 A;  3DEV A;  1WPM A;  4LS9 A;  1WPN A;  2QB6 A;  4PY9 A;  2QB7 A;  3W5W A; 
#chains in the Genus database with same CATH topology
 2IW4 A;  1K23 A;  2KW7 A;  2YMA A;  2H9F A;  4K7X A;  1XUA A;  4JUU A;  2AZP A;  1WPP A;  2ENX A;  4J9X A;  5M47 A;  3EJX A;  4PY9 A;  3G7K A;  3W5W A;  4K7G B;  1U1X A;  2ZXP A;  2ZXO A;  4JD7 A;  1S7J A;  4RPA A;  2HAW A;  5H2G A;  1U1V A;  5GL3 A;  1GQZ A;  4DWZ A;  5ANP A;  5H2Y A;  4GL6 A;  2QB6 A;  2GKJ A;  2MPB A;  2Q9J A;  3ICJ A;  4J9W A;  4Q2H A;  1SDJ A;  4IK0 A;  4Q60 A;  5GL2 A;  4OA3 A;  1XUB A;  2Q9H A;  5GL4 A;  2PVZ A;  3IGH X;  5HA4 A;  2GKE A;  2ZXR A;  2QB8 A;  4LB0 A;  4K8L A;  1WPN A;  3G98 A;  1W62 A;  4IJZ A;  2EB0 A;  1QY9 A;  1IR6 A;  1YM5 A;  2KPT A;  1U1W A;  4JCI A;  1TM0 A;  2ZVF A;  5GKX A;  2LT2 A;  2QB7 A;  3PTJ A;  1W61 A;  2OTN A;  2PW0 A;  3WQZ A;  4LG3 A;  1K20 A;  3PW9 A;  3DEV A;  1WPM A;  3EKM A;  1BWZ A;  3EDN A;  1I74 A;  1U0K A;  4DUN A;  4LS9 A;  4JBD A;  5IWE A;  1QYA A;  4FC5 A;  1T6K A;  3FVE A;  3PVH A; 
#chains in the Genus database with same CATH homology
 2IW4 A;  1K23 A;  2KW7 A;  2YMA A;  2H9F A;  4K7X A;  1XUA A;  4JUU A;  2AZP A;  1WPP A;  2ENX A;  4J9X A;  5M47 A;  3EJX A;  4PY9 A;  3G7K A;  3W5W A;  4K7G B;  1U1X A;  2ZXP A;  2ZXO A;  4JD7 A;  1S7J A;  4RPA A;  2HAW A;  5H2G A;  1U1V A;  5GL3 A;  1GQZ A;  4DWZ A;  5ANP A;  5H2Y A;  4GL6 A;  2QB6 A;  2GKJ A;  2MPB A;  2Q9J A;  3ICJ A;  4J9W A;  4Q2H A;  1SDJ A;  4IK0 A;  4Q60 A;  5GL2 A;  4OA3 A;  1XUB A;  2Q9H A;  5GL4 A;  2PVZ A;  3IGH X;  5HA4 A;  2GKE A;  2ZXR A;  2QB8 A;  4LB0 A;  4K8L A;  1WPN A;  3G98 A;  1W62 A;  4IJZ A;  2EB0 A;  1QY9 A;  1IR6 A;  1YM5 A;  2KPT A;  1U1W A;  4JCI A;  1TM0 A;  2ZVF A;  5GKX A;  2LT2 A;  2QB7 A;  3PTJ A;  1W61 A;  2OTN A;  2PW0 A;  3WQZ A;  4LG3 A;  1K20 A;  3PW9 A;  3DEV A;  1WPM A;  3EKM A;  1BWZ A;  3EDN A;  1I74 A;  1U0K A;  4DUN A;  4LS9 A;  4JBD A;  5IWE A;  1QYA A;  4FC5 A;  1T6K A;  3FVE A;  3PVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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