1KF6D

E. coli quinol-fumarate reductase with bound inhibitor hqno
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
119
structure length
119
Chain Sequence
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic studies of the Escherichia coli quinol-fumarate reductase with inhibitors bound to the quinol-binding site.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords FUMARATE REDUCTASE FLAVOPROTEIN
total genus 44
structure length 119
sequence length 119
chains with identical sequence P
ec nomenclature
pdb deposition date 2001-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02313 Fumarate_red_D Fumarate reductase subunit D
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1kf6D00
3ABVD 3AEAC 2BS4C 4YSZD 3P4PD 1KF6D 2WS3D 3AEDD 3AE2D 3P4RC 2WDVC 3AE1C 4YT0C 3AEAD 3AE9C 3AEBC 3AE6C 4YXDC 2ACZD 5C3JC 3AEED 2BS2C 2H88C 1ZOYC 2B76C 2WU5C 1ZP0D 3P4RD 2WQYC 2WDRC 2H89C 3AE9D 3AE7D 3AEBD 3AE6D 4YXDD 4YTMD 3P4QC 5C3JD 4YSXC 3SFDD 3AEFD 4KX6C 3AECD 1YQ3D 3VR8C 1ZOYD 2B76D 2WU5D 3AE8D 2WQYD 1L0VC 2WDRD 3AE4C 3AE5C 2WDQC 5C2TC 4YSXD 1NEKC 3VRAC 4KX6D 3VR8D 4YSYC 1NENC 2WP9C 3AE3C 3CIRC 2WDVD 3AE1D 3AE4D 4YT0D 2WDQD 5C2TD 2WU2C 3VR9C 1KFYC 2H88D 1QLBC 4YSZC 4YSYD 3P4PC 2WP9D 3CIRD 2H89D 3AEGC 3P4QD 3VRBC 1YQ4C 2BS3C 2WU2D 4YTNC 3VR9D 3SFEC 1KFYD 2ACZC 1L0VD 2FBWC 3AEEC 3AE5D 3P4SC 1ZP0C 3AEGD 3VRBD 1YQ4D 4YTPC 3ABVC 1NEKD 4YTND 3SFED 3VRAD 3AE7C 4YTMC 1NEND 1KF6C 3AE3D 2FBWD 3SFDC 3AEFC 3P4SD 2WS3C 3AEDC 3AECC 1YQ3C 3AE2C 1E7PC 3AE8C 4YTPD
chains in the Genus database with same CATH superfamily
3ABVD 3AEAC 2BS4C 4YSZD 3P4PD 1KF6D 2WS3D 3AEDD 3AE2D 3P4RC 4DDGA 2WDVC 3AE1C 4YT0C 3AEAD 3AE9C 4DHZA 3AEBC 3AE6C 4YXDC 2ACZD 5C3JC 3AEED 2BS2C 2H88C 1ZOYC 2B76C 2WU5C 1ZP0D 3P4RD 2WQYC 2WDRC 2H89C 3AE9D 3AE7D 3AEBD 3AE6D 4FJVA 4YTMD 3P4QC 4YXDD 5C3JD 4YSXC 3SFDD 3AEFD 2ZFYA 4KX6C 3AECD 1YQ3D 3VR8C 1ZOYD 2B76D 2WU5D 4LDTA 3AE8D 2WQYD 1L0VC 2WDRD 3AE4C 3AE5C 2WDQC 5C2TC 4YSXD 1NEKC 3VRAC 4KX6D 3VR8D 4YSYC 1NENC 2WP9C 3AE3C 3CIRC 2WDVD 3AE1D 3AE4D 4YT0D 4I6LA 2WDQD 5C2TD 2WU2C 1TFFA 3VR9C 1KFYC 2H88D 1QLBC 4YSZC 4YSYD 3P4PC 4DHIB 2WP9D 3CIRD 2H89D 4DDIA 3AEGC 3P4QD 3VRBC 1YQ4C 2BS3C 2WU2D 4YTNC 3VR9D 3SFEC 1KFYD 2ACZC 1L0VD 2FBWC 3AEEC 4DHJA 3AE5D 3P4SC 1ZP0C 3AEGD 3VRBD 1YQ4D 4YTPC 3VONA 3ABVC 1NEKD 4YTND 3SFED 3VRAD 3AE7C 4YTMC 1NEND 1KF6C 3AE3D 2FBWD 3SFDC 3AEFC 3P4SD 2WS3C 3AEDC 3AECC 1YQ3C 3AE2C 1E7PC 3AE8C 4YTPD
chains in the Genus database with same CATH topology
3ABVD 3AEAC 2BS4C 4YSZD 3P4PD 1KF6D 2WS3D 3AEDD 3AE2D 3P4RC 2WDVC 3AE1C 4YT0C 3AEAD 3AE9C 3AEBC 3AE6C 4YXDC 2ACZD 5C3JC 3AEED 2BS2C 2H88C 1ZOYC 2B76C 2WU5C 1ZP0D 3P4RD 2WQYC 2WDRC 2H89C 3AE9D 3AE7D 3AEBD 3AE6D 4YXDD 4YTMD 3P4QC 5C3JD 4YSXC 3SFDD 3AEFD 4KX6C 3AECD 1YQ3D 3VR8C 1ZOYD 2B76D 2WU5D 3AE8D 2WQYD 1L0VC 2WDRD 3AE4C 3AE5C 2WDQC 5C2TC 4YSXD 1NEKC 3VRAC 4KX6D 3VR8D 4YSYC 1NENC 2WP9C 3AE3C 3CIRC 2WDVD 3AE1D 3AE4D 4YT0D 2WDQD 5C2TD 2WU2C 3VR9C 1KFYC 2H88D 1QLBC 4YSZC 4YSYD 3P4PC 2WP9D 3CIRD 2H89D 3AEGC 3P4QD 3VRBC 1YQ4C 2BS3C 2WU2D 4YTNC 3VR9D 3SFEC 1KFYD 2ACZC 1L0VD 2FBWC 3AEEC 3AE5D 3P4SC 1ZP0C 3AEGD 3VRBD 1YQ4D 4YTPC 3ABVC 1NEKD 4YTND 3SFED 3VRAD 3AE7C 4YTMC 1NEND 1KF6C 3AE3D 2FBWD 3SFDC 3AEFC 3P4SD 2WS3C 3AEDC 3AECC 1YQ3C 3AE2C 1E7PC 3AE8C 4YTPD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ABV D;  3AEA C;  2BS4 C;  4YSZ D;  3P4P D;  1KF6 D;  2WS3 D;  3AED D;  3AE2 D;  3P4R C;  2WDV C;  3AE1 C;  4YT0 C;  3AEA D;  3AE9 C;  3AEB C;  3AE6 C;  4YXD C;  2ACZ D;  5C3J C;  3AEE D;  2BS2 C;  2H88 C;  1ZOY C;  2B76 C;  2WU5 C;  1ZP0 D;  3P4R D;  2WQY C;  2WDR C;  2H89 C;  3AE9 D;  3AE7 D;  3AEB D;  3AE6 D;  4YXD D;  4YTM D;  3P4Q C;  5C3J D;  4YSX C;  3SFD D;  3AEF D;  4KX6 C;  3AEC D;  1YQ3 D;  3VR8 C;  1ZOY D;  2B76 D;  2WU5 D;  3AE8 D;  2WQY D;  1L0V C;  2WDR D;  3AE4 C;  3AE5 C;  2WDQ C;  5C2T C;  4YSX D;  1NEK C;  3VRA C;  4KX6 D;  3VR8 D;  4YSY C;  1NEN C;  2WP9 C;  3AE3 C;  3CIR C;  2WDV D;  3AE1 D;  3AE4 D;  4YT0 D;  2WDQ D;  5C2T D;  2WU2 C;  3VR9 C;  1KFY C;  2H88 D;  1QLB C;  4YSZ C;  4YSY D;  3P4P C;  2WP9 D;  3CIR D;  2H89 D;  3AEG C;  3P4Q D;  3VRB C;  1YQ4 C;  2BS3 C;  2WU2 D;  4YTN C;  3VR9 D;  3SFE C;  1KFY D;  2ACZ C;  1L0V D;  2FBW C;  3AEE C;  3AE5 D;  3P4S C;  1ZP0 C;  3AEG D;  3VRB D;  1YQ4 D;  4YTP C;  3ABV C;  1NEK D;  4YTN D;  3SFE D;  3VRA D;  3AE7 C;  4YTM C;  1NEN D;  1KF6 C;  3AE3 D;  2FBW D;  3SFD C;  3AEF C;  3P4S D;  2WS3 C;  3AED C;  3AEC C;  1YQ3 C;  3AE2 C;  1E7P C;  3AE8 C;  4YTP D; 
#chains in the Genus database with same CATH topology
 3ABV D;  3AEA C;  2BS4 C;  4YSZ D;  3P4P D;  1KF6 D;  2WS3 D;  3AED D;  3AE2 D;  3P4R C;  4DDG A;  2WDV C;  3AE1 C;  4YT0 C;  3AEA D;  3AE9 C;  4DHZ A;  3AEB C;  3AE6 C;  4YXD C;  2ACZ D;  5C3J C;  3AEE D;  2BS2 C;  2H88 C;  1ZOY C;  2B76 C;  2WU5 C;  1ZP0 D;  3P4R D;  2WQY C;  2WDR C;  2H89 C;  3AE9 D;  3AE7 D;  3AEB D;  3AE6 D;  4FJV A;  4YTM D;  3P4Q C;  4YXD D;  5C3J D;  4YSX C;  3SFD D;  3AEF D;  2ZFY A;  4KX6 C;  3AEC D;  1YQ3 D;  3VR8 C;  1ZOY D;  2B76 D;  2WU5 D;  4LDT A;  3AE8 D;  2WQY D;  1L0V C;  2WDR D;  3AE4 C;  3AE5 C;  2WDQ C;  5C2T C;  4YSX D;  1NEK C;  3VRA C;  4KX6 D;  3VR8 D;  4YSY C;  1NEN C;  2WP9 C;  3AE3 C;  3CIR C;  2WDV D;  3AE1 D;  3AE4 D;  4YT0 D;  4I6L A;  2WDQ D;  5C2T D;  2WU2 C;  1TFF A;  3VR9 C;  1KFY C;  2H88 D;  1QLB C;  4YSZ C;  4YSY D;  3P4P C;  4DHI B;  2WP9 D;  3CIR D;  2H89 D;  4DDI A;  3AEG C;  3P4Q D;  3VRB C;  1YQ4 C;  2BS3 C;  2WU2 D;  4YTN C;  3VR9 D;  3SFE C;  1KFY D;  2ACZ C;  1L0V D;  2FBW C;  3AEE C;  4DHJ A;  3AE5 D;  3P4S C;  1ZP0 C;  3AEG D;  3VRB D;  1YQ4 D;  4YTP C;  3VON A;  3ABV C;  1NEK D;  4YTN D;  3SFE D;  3VRA D;  3AE7 C;  4YTM C;  1NEN D;  1KF6 C;  3AE3 D;  2FBW D;  3SFD C;  3AEF C;  3P4S D;  2WS3 C;  3AED C;  3AEC C;  1YQ3 C;  3AE2 C;  1E7P C;  3AE8 C;  4YTP D; 
#chains in the Genus database with same CATH homology
 3ABV D;  3AEA C;  2BS4 C;  4YSZ D;  3P4P D;  1KF6 D;  2WS3 D;  3AED D;  3AE2 D;  3P4R C;  2WDV C;  3AE1 C;  4YT0 C;  3AEA D;  3AE9 C;  3AEB C;  3AE6 C;  4YXD C;  2ACZ D;  5C3J C;  3AEE D;  2BS2 C;  2H88 C;  1ZOY C;  2B76 C;  2WU5 C;  1ZP0 D;  3P4R D;  2WQY C;  2WDR C;  2H89 C;  3AE9 D;  3AE7 D;  3AEB D;  3AE6 D;  4YXD D;  4YTM D;  3P4Q C;  5C3J D;  4YSX C;  3SFD D;  3AEF D;  4KX6 C;  3AEC D;  1YQ3 D;  3VR8 C;  1ZOY D;  2B76 D;  2WU5 D;  3AE8 D;  2WQY D;  1L0V C;  2WDR D;  3AE4 C;  3AE5 C;  2WDQ C;  5C2T C;  4YSX D;  1NEK C;  3VRA C;  4KX6 D;  3VR8 D;  4YSY C;  1NEN C;  2WP9 C;  3AE3 C;  3CIR C;  2WDV D;  3AE1 D;  3AE4 D;  4YT0 D;  2WDQ D;  5C2T D;  2WU2 C;  3VR9 C;  1KFY C;  2H88 D;  1QLB C;  4YSZ C;  4YSY D;  3P4P C;  2WP9 D;  3CIR D;  2H89 D;  3AEG C;  3P4Q D;  3VRB C;  1YQ4 C;  2BS3 C;  2WU2 D;  4YTN C;  3VR9 D;  3SFE C;  1KFY D;  2ACZ C;  1L0V D;  2FBW C;  3AEE C;  3AE5 D;  3P4S C;  1ZP0 C;  3AEG D;  3VRB D;  1YQ4 D;  4YTP C;  3ABV C;  1NEK D;  4YTN D;  3SFE D;  3VRA D;  3AE7 C;  4YTM C;  1NEN D;  1KF6 C;  3AE3 D;  2FBW D;  3SFD C;  3AEF C;  3P4S D;  2WS3 C;  3AED C;  3AEC C;  1YQ3 C;  3AE2 C;  1E7P C;  3AE8 C;  4YTP D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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