1NEN | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	113
structure length	113
Chain Sequence	SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 113 atoms

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113 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase/electron transport
source organism	Escherichia coli
publication title	Architecture of succinate dehydrogenase and reactive oxygen species generation pubmed doi rcsb
molecule keywords	Succinate dehydrogenase flavoprotein subunit
total genus	45
structure length	113
sequence length	113
ec nomenclature
pdb deposition date	2002-12-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF01127	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	1nenD01

4YTPD 3AEFD 3VRBC 4YT0D 3AECD 3P4SC 4YSZD 3AEBD 3VR8D 3AE8C 3AE1D 4YTPC 3AEFC 4YT0C 3P4QD 3AE9C 3AECC 1QLBC 3VR8C 4YTNC 4KX6D 1NEKC 2WDQD 2WU5D 1KF6C 2H89C 1E7PC 2ACZC 5C3JD 4KX6C 2B76D 3AE5C 3AE2D 5C3JC 1YQ3D 3AEDD 3AEED 3AE7C 3AE4D 1YQ3C 2FBWD 2WP9D 4YTMD 3AEBC 1ZOYD 4YSZC 3AE1C 4YSYD 3P4QC 2BS2C 3AEGD 4YTMC 3VRAD 4YSYC 2WDQC 3AE3D 2WU5C 1YQ4D 3SFDD 1ZP0D 2B76C 3P4PD 3AE2C 2BS3C 3AE3C 5C2TD 2WDVD 2WQYD 1KFYD 3AEAD 3VR9D 3AEDC 2WDRD 3P4RD 3CIRD 4YSXD 2WS3D 2WDVC 3AEEC 2H88D 1NEND 1KFYC 3AE4C 3SFED 2WU2D 3VR9C 2WDRC 2FBWC 3P4RC 4YXDD 2WP9C 3CIRC 2WS3C 3AE6D 3SFEC 3VRBD 1ZOYC 4YXDC 3AE6C 3AE8D 3AEGC 3VRAC 3AE9D 3ABVD 4YTND 1NEKD 1YQ4C 3SFDC 1ZP0C 2BS4C 1KF6D 2H89D 3P4PC 3ABVC 2ACZD 5C2TC 3AE5D 2WQYC 1L0VD 3AEAC 4YSXC 1L0VC 2H88C 1NENC 2WU2C 3AE7D 3P4SD
chains in the Genus database with same CATH superfamily

4YTPD 2ZFYA 3AEFD 3VRBC 4LDTA 4YT0D 3AECD 3P4SC 4YSZD 3AEBD 3VR8D 3AE8C 3AE1D 4YTPC 3AEFC 4DHZA 4YT0C 3P4QD 3AE9C 3AECC 1QLBC 3VR8C 4YTNC 4KX6D 1NEKC 2WDQD 2WU5D 1KF6C 2H89C 1E7PC 2ACZC 5C3JD 4KX6C 2B76D 3AE5C 3AE2D 4DHJA 5C3JC 1YQ3D 3AEDD 3AEED 3AE7C 3AE4D 1YQ3C 2FBWD 2WP9D 4I6LA 4YTMD 3AEBC 1ZOYD 4YSZC 3AE1C 4YSYD 3P4QC 2BS2C 3AEGD 4YTMC 3VRAD 4YSYC 2WDQC 3AE3D 2WU5C 1YQ4D 3SFDD 4DHIB 1ZP0D 2B76C 3P4PD 3AE2C 2BS3C 3AE3C 5C2TD 2WDVD 2WQYD 1KFYD 3AEAD 3VR9D 3AEDC 2WDRD 3P4RD 3CIRD 4YSXD 2WS3D 2WDVC 3AEEC 3VONA 2H88D 1NEND 1KFYC 3AE4C 3SFED 2WU2D 3VR9C 2WDRC 2FBWC 3P4RC 4YXDD 2WP9C 3CIRC 2WS3C 1TFFA 3AE6D 3SFEC 3VRBD 1ZOYC 4YXDC 3AE6C 3AE8D 3AEGC 4DDIA 3VRAC 3AE9D 4DDGA 3ABVD 4YTND 1NEKD 1YQ4C 3SFDC 1ZP0C 2BS4C 1KF6D 2H89D 3P4PC 3ABVC 2ACZD 5C2TC 3AE5D 2WQYC 1L0VD 3AEAC 4FJVA 4YSXC 1L0VC 2H88C 1NENC 2WU2C 3AE7D 3P4SD
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4YTP D;  3AEF D;  3VRB C;  4YT0 D;  3AEC D;  3P4S C;  4YSZ D;  3AEB D;  3VR8 D;  3AE8 C;  3AE1 D;  4YTP C;  3AEF C;  4YT0 C;  3P4Q D;  3AE9 C;  3AEC C;  1QLB C;  3VR8 C;  4YTN C;  4KX6 D;  1NEK C;  2WDQ D;  2WU5 D;  1KF6 C;  2H89 C;  1E7P C;  2ACZ C;  5C3J D;  4KX6 C;  2B76 D;  3AE5 C;  3AE2 D;  5C3J C;  1YQ3 D;  3AED D;  3AEE D;  3AE7 C;  3AE4 D;  1YQ3 C;  2FBW D;  2WP9 D;  4YTM D;  3AEB C;  1ZOY D;  4YSZ C;  3AE1 C;  4YSY D;  3P4Q C;  2BS2 C;  3AEG D;  4YTM C;  3VRA D;  4YSY C;  2WDQ C;  3AE3 D;  2WU5 C;  1YQ4 D;  3SFD D;  1ZP0 D;  2B76 C;  3P4P D;  3AE2 C;  2BS3 C;  3AE3 C;  5C2T D;  2WDV D;  2WQY D;  1KFY D;  3AEA D;  3VR9 D;  3AED C;  2WDR D;  3P4R D;  3CIR D;  4YSX D;  2WS3 D;  2WDV C;  3AEE C;  2H88 D;  1NEN D;  1KFY C;  3AE4 C;  3SFE D;  2WU2 D;  3VR9 C;  2WDR C;  2FBW C;  3P4R C;  4YXD D;  2WP9 C;  3CIR C;  2WS3 C;  3AE6 D;  3SFE C;  3VRB D;  1ZOY C;  4YXD C;  3AE6 C;  3AE8 D;  3AEG C;  3VRA C;  3AE9 D;  3ABV D;  4YTN D;  1NEK D;  1YQ4 C;  3SFD C;  1ZP0 C;  2BS4 C;  1KF6 D;  2H89 D;  3P4P C;  3ABV C;  2ACZ D;  5C2T C;  3AE5 D;  2WQY C;  1L0V D;  3AEA C;  4YSX C;  1L0V C;  2H88 C;  1NEN C;  2WU2 C;  3AE7 D;  3P4S D; 
#chains in the Genus database with same CATH topology
 4YTP D;  2ZFY A;  3AEF D;  3VRB C;  4LDT A;  4YT0 D;  3AEC D;  3P4S C;  4YSZ D;  3AEB D;  3VR8 D;  3AE8 C;  3AE1 D;  4YTP C;  3AEF C;  4DHZ A;  4YT0 C;  3P4Q D;  3AE9 C;  3AEC C;  1QLB C;  3VR8 C;  4YTN C;  4KX6 D;  1NEK C;  2WDQ D;  2WU5 D;  1KF6 C;  2H89 C;  1E7P C;  2ACZ C;  5C3J D;  4KX6 C;  2B76 D;  3AE5 C;  3AE2 D;  4DHJ A;  5C3J C;  1YQ3 D;  3AED D;  3AEE D;  3AE7 C;  3AE4 D;  1YQ3 C;  2FBW D;  2WP9 D;  4I6L A;  4YTM D;  3AEB C;  1ZOY D;  4YSZ C;  3AE1 C;  4YSY D;  3P4Q C;  2BS2 C;  3AEG D;  4YTM C;  3VRA D;  4YSY C;  2WDQ C;  3AE3 D;  2WU5 C;  1YQ4 D;  3SFD D;  4DHI B;  1ZP0 D;  2B76 C;  3P4P D;  3AE2 C;  2BS3 C;  3AE3 C;  5C2T D;  2WDV D;  2WQY D;  1KFY D;  3AEA D;  3VR9 D;  3AED C;  2WDR D;  3P4R D;  3CIR D;  4YSX D;  2WS3 D;  2WDV C;  3AEE C;  3VON A;  2H88 D;  1NEN D;  1KFY C;  3AE4 C;  3SFE D;  2WU2 D;  3VR9 C;  2WDR C;  2FBW C;  3P4R C;  4YXD D;  2WP9 C;  3CIR C;  2WS3 C;  1TFF A;  3AE6 D;  3SFE C;  3VRB D;  1ZOY C;  4YXD C;  3AE6 C;  3AE8 D;  3AEG C;  4DDI A;  3VRA C;  3AE9 D;  4DDG A;  3ABV D;  4YTN D;  1NEK D;  1YQ4 C;  3SFD C;  1ZP0 C;  2BS4 C;  1KF6 D;  2H89 D;  3P4P C;  3ABV C;  2ACZ D;  5C2T C;  3AE5 D;  2WQY C;  1L0V D;  3AEA C;  4FJV A;  4YSX C;  1L0V C;  2H88 C;  1NEN C;  2WU2 C;  3AE7 D;  3P4S D; 
#chains in the Genus database with same CATH homology
 4YTP D;  3AEF D;  3VRB C;  4YT0 D;  3AEC D;  3P4S C;  4YSZ D;  3AEB D;  3VR8 D;  3AE8 C;  3AE1 D;  4YTP C;  3AEF C;  4YT0 C;  3P4Q D;  3AE9 C;  3AEC C;  1QLB C;  3VR8 C;  4YTN C;  4KX6 D;  1NEK C;  2WDQ D;  2WU5 D;  1KF6 C;  2H89 C;  1E7P C;  2ACZ C;  5C3J D;  4KX6 C;  2B76 D;  3AE5 C;  3AE2 D;  5C3J C;  1YQ3 D;  3AED D;  3AEE D;  3AE7 C;  3AE4 D;  1YQ3 C;  2FBW D;  2WP9 D;  4YTM D;  3AEB C;  1ZOY D;  4YSZ C;  3AE1 C;  4YSY D;  3P4Q C;  2BS2 C;  3AEG D;  4YTM C;  3VRA D;  4YSY C;  2WDQ C;  3AE3 D;  2WU5 C;  1YQ4 D;  3SFD D;  1ZP0 D;  2B76 C;  3P4P D;  3AE2 C;  2BS3 C;  3AE3 C;  5C2T D;  2WDV D;  2WQY D;  1KFY D;  3AEA D;  3VR9 D;  3AED C;  2WDR D;  3P4R D;  3CIR D;  4YSX D;  2WS3 D;  2WDV C;  3AEE C;  2H88 D;  1NEN D;  1KFY C;  3AE4 C;  3SFE D;  2WU2 D;  3VR9 C;  2WDR C;  2FBW C;  3P4R C;  4YXD D;  2WP9 C;  3CIR C;  2WS3 C;  3AE6 D;  3SFE C;  3VRB D;  1ZOY C;  4YXD C;  3AE6 C;  3AE8 D;  3AEG C;  3VRA C;  3AE9 D;  3ABV D;  4YTN D;  1NEK D;  1YQ4 C;  3SFD C;  1ZP0 C;  2BS4 C;  1KF6 D;  2H89 D;  3P4P C;  3ABV C;  2ACZ D;  5C2T C;  3AE5 D;  2WQY C;  1L0V D;  3AEA C;  4YSX C;  1L0V C;  2H88 C;  1NEN C;  2WU2 C;  3AE7 D;  3P4S D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NEND

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations