1WPMA

Structure of bacillus subtilis inorganic pyrophosphatase
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
307
structure length
307
Chain Sequence
EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENNVKIEKEIAGLMLSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNMLKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKVVAEKNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDAMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Bacillus subtilis
publication title Structural Studies of Metal Ions in Family II Pyrophosphatases: The Requirement for a Janus Ion
pubmed doi rcsb
molecule keywords Manganese-dependent inorganic pyrophosphatase
total genus 115
structure length 307
sequence length 307
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2004-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1wpmA02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1wpmA01
2QB7A 1WPMA 1WPPA 1I74A 3DEVA 2IW4A 4PY9A 2QB6A 2EB0A 3W5WA 2ENXA 2HAWA 4RPAA 1WPNA 1K23A 1K20A 2QB8A 4LS9A
chains in the Genus database with same CATH superfamily
3DEVA 1QY9A 2ZVFA 2GKJA 4RPAA 2GKEA 4IK0A 4LB0A 3W5WA 5GL2A 4LG3A 1SDJA 1XUAA 2Q9JA 1U0KA 3EJXA 1GQZA 1W62A 3PW9A 2PW0A 5ANPA 2KPTA 4K8LA 2MPBA 4FC5A 1TM0A 2ZXOA 2QB7A 2YMAA 2EB0A 5M47A 5GL4A 1T6KA 1S7JA 2H9FA 4GL6A 3FVEA 4IJZA 1YM5A 2ZXPA 3EKMA 4JCIA 3G98A 3WQZA 1WPMA 1U1WA 4DUNA 1K23A 1WPPA 1W61A 5H2YA 2HAWA 4J9XA 4OA3A 4Q60A 1I74A 1BWZA 2PVZA 3PTJA 5HA4A 4PY9A 2QB8A 2AZPA 4LS9A 1U1XA 5GKXA 4JBDA 4JD7A 1WPNA 3G7KA 1U1VA 2ZXRA 4K7GB 4K7XA 3EDNA 4J9WA 4JUUA 1XUBA 2KW7A 1K20A 2Q9HA 1QYAA 3IGHX 2IW4A 2OTNA 3PVHA 1IR6A 2ENXA 2LT2A 5H2GA 5IWEA 3ICJA 4Q2HA 5GL3A 2QB6A 4DWZA
chains in the Genus database with same CATH topology
3DEVA 1QY9A 2ZVFA 2GKJA 4RPAA 2GKEA 4IK0A 4LB0A 3W5WA 5GL2A 4LG3A 1SDJA 1XUAA 2Q9JA 1U0KA 3EJXA 1GQZA 1W62A 3PW9A 2PW0A 5ANPA 2KPTA 4K8LA 2MPBA 4FC5A 1TM0A 2ZXOA 2QB7A 2YMAA 2EB0A 5M47A 5GL4A 1T6KA 1S7JA 2H9FA 4GL6A 3FVEA 4IJZA 1YM5A 2ZXPA 3EKMA 4JCIA 3G98A 3WQZA 1WPMA 1U1WA 4DUNA 1K23A 1WPPA 1W61A 5H2YA 2HAWA 4J9XA 4OA3A 4Q60A 1I74A 1BWZA 2PVZA 3PTJA 5HA4A 4PY9A 2QB8A 2AZPA 4LS9A 1U1XA 5GKXA 4JBDA 4JD7A 1WPNA 3G7KA 1U1VA 2ZXRA 4K7GB 4K7XA 3EDNA 4J9WA 4JUUA 1XUBA 2KW7A 1K20A 2Q9HA 1QYAA 3IGHX 2IW4A 2OTNA 3PVHA 1IR6A 2ENXA 2LT2A 5H2GA 5IWEA 3ICJA 4Q2HA 5GL3A 2QB6A 4DWZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QB7 A;  1WPM A;  1WPP A;  1I74 A;  3DEV A;  2IW4 A;  4PY9 A;  2QB6 A;  2EB0 A;  3W5W A;  2ENX A;  2HAW A;  4RPA A;  1WPN A;  1K23 A;  1K20 A;  2QB8 A;  4LS9 A; 
#chains in the Genus database with same CATH topology
 3DEV A;  1QY9 A;  2ZVF A;  2GKJ A;  4RPA A;  2GKE A;  4IK0 A;  4LB0 A;  3W5W A;  5GL2 A;  4LG3 A;  1SDJ A;  1XUA A;  2Q9J A;  1U0K A;  3EJX A;  1GQZ A;  1W62 A;  3PW9 A;  2PW0 A;  5ANP A;  2KPT A;  4K8L A;  2MPB A;  4FC5 A;  1TM0 A;  2ZXO A;  2QB7 A;  2YMA A;  2EB0 A;  5M47 A;  5GL4 A;  1T6K A;  1S7J A;  2H9F A;  4GL6 A;  3FVE A;  4IJZ A;  1YM5 A;  2ZXP A;  3EKM A;  4JCI A;  3G98 A;  3WQZ A;  1WPM A;  1U1W A;  4DUN A;  1K23 A;  1WPP A;  1W61 A;  5H2Y A;  2HAW A;  4J9X A;  4OA3 A;  4Q60 A;  1I74 A;  1BWZ A;  2PVZ A;  3PTJ A;  5HA4 A;  4PY9 A;  2QB8 A;  2AZP A;  4LS9 A;  1U1X A;  5GKX A;  4JBD A;  4JD7 A;  1WPN A;  3G7K A;  1U1V A;  2ZXR A;  4K7G B;  4K7X A;  3EDN A;  4J9W A;  4JUU A;  1XUB A;  2KW7 A;  1K20 A;  2Q9H A;  1QYA A;  3IGH X;  2IW4 A;  2OTN A;  3PVH A;  1IR6 A;  2ENX A;  2LT2 A;  5H2G A;  5IWE A;  3ICJ A;  4Q2H A;  5GL3 A;  2QB6 A;  4DWZ A; 
#chains in the Genus database with same CATH homology
 3DEV A;  1QY9 A;  2ZVF A;  2GKJ A;  4RPA A;  2GKE A;  4IK0 A;  4LB0 A;  3W5W A;  5GL2 A;  4LG3 A;  1SDJ A;  1XUA A;  2Q9J A;  1U0K A;  3EJX A;  1GQZ A;  1W62 A;  3PW9 A;  2PW0 A;  5ANP A;  2KPT A;  4K8L A;  2MPB A;  4FC5 A;  1TM0 A;  2ZXO A;  2QB7 A;  2YMA A;  2EB0 A;  5M47 A;  5GL4 A;  1T6K A;  1S7J A;  2H9F A;  4GL6 A;  3FVE A;  4IJZ A;  1YM5 A;  2ZXP A;  3EKM A;  4JCI A;  3G98 A;  3WQZ A;  1WPM A;  1U1W A;  4DUN A;  1K23 A;  1WPP A;  1W61 A;  5H2Y A;  2HAW A;  4J9X A;  4OA3 A;  4Q60 A;  1I74 A;  1BWZ A;  2PVZ A;  3PTJ A;  5HA4 A;  4PY9 A;  2QB8 A;  2AZP A;  4LS9 A;  1U1X A;  5GKX A;  4JBD A;  4JD7 A;  1WPN A;  3G7K A;  1U1V A;  2ZXR A;  4K7G B;  4K7X A;  3EDN A;  4J9W A;  4JUU A;  1XUB A;  2KW7 A;  1K20 A;  2Q9H A;  1QYA A;  3IGH X;  2IW4 A;  2OTN A;  3PVH A;  1IR6 A;  2ENX A;  2LT2 A;  5H2G A;  5IWE A;  3ICJ A;  4Q2H A;  5GL3 A;  2QB6 A;  4DWZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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