2B76D

E. coli quinol fumarate reductase frda e49q mutation
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
119
structure length
119
Chain Sequence
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Fumarate Reductase and Succinate Oxidase Activity of Escherichia coli Complex II Homologs Are Perturbed Differently by Mutation of the Flavin Binding Domain
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Fumarate reductase flavoprotein subunit
total genus 40
structure length 119
sequence length 119
chains with identical sequence P
ec nomenclature
pdb deposition date 2005-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02313 Fumarate_red_D Fumarate reductase subunit D
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2b76D00
2WDQD 3ABVD 1KF6D 2B76C 3AEBD 4YTMD 2WDRC 4YSZC 4YSXC 2B76D 3VR9C 3AEDC 2WP9C 1YQ3D 4YSZD 3CIRD 3AE9D 4YT0C 1YQ4D 3VRAC 2WU2C 4YXDC 3SFDC 1NEKD 2WDQC 3AE3D 4YXDD 3VR8C 2WS3D 2WDVD 2H88D 3AEBC 4YTMC 3VR8D 3AEFD 1E7PC 3AE5C 1QLBC 1YQ3C 3CIRC 3AE9C 1YQ4C 2WQYD 1KFYD 3AE5D 3AEAC 1NEKC 3P4SC 3AEAD 3AE3C 2WS3C 3P4QC 2WDVC 2H88C 3P4SD 4KX6D 1ZP0C 3AEGD 4YSYD 5C2TD 1L0VD 3AEFC 2BS2C 3P4QD 1ZP0D 4YTND 2FBWD 2BS4C 2WQYC 1KFYC 3SFED 3AE2D 3AE6D 5C3JD 3P4PD 2WU5C 3AE8D 2WU5D 3VRBD 4KX6C 1ZOYD 3AEGC 3P4RC 4YSYC 1L0VC 5C2TC 2ACZD 3AE7C 3AEED 2H89D 1NEND 3P4RD 4YTNC 3AE1D 2FBWC 4YTPC 3AECC 3AE7D 3SFEC 3AE6C 3AE2C 5C3JC 3P4PC 4YTPD 3AECD 3AE8C 2WDRD 4YSXD 3AE4C 3VR9D 3VRBC 3AEDD 1ZOYC 2WP9D 2ACZC 4YT0D 3AE4D 2H89C 3AEEC 2WU2D 1NENC 3VRAD 3SFDD 3AE1C 3ABVC 2BS3C 1KF6C
chains in the Genus database with same CATH superfamily
2WDQD 3ABVD 1KF6D 2B76C 3AEBD 4YTMD 2WDRC 4YSZC 4YSXC 2B76D 3VR9C 3AEDC 2WP9C 1YQ3D 4YSZD 3CIRD 3AE9D 4YT0C 1YQ4D 4FJVA 3VRAC 2WU2C 4YXDC 3SFDC 1NEKD 2WDQC 3AE3D 4YXDD 3VR8C 2WS3D 2WDVD 2H88D 3AEBC 4YTMC 3VR8D 3AEFD 2ZFYA 1E7PC 4DDGA 3AE5C 1QLBC 1YQ3C 3CIRC 3AE9C 1YQ4C 2WQYD 1KFYD 3AE5D 3AEAC 1NEKC 3P4SC 3AEAD 3AE3C 2WS3C 3P4QC 2WDVC 2H88C 3P4SD 4KX6D 1ZP0C 1TFFA 3AEGD 4YSYD 5C2TD 1L0VD 4DDIA 3AEFC 4DHJA 2BS2C 3P4QD 4DHZA 1ZP0D 4YTND 2FBWD 2BS4C 2WQYC 1KFYC 3SFED 3AE2D 3AE6D 5C3JD 3P4PD 2WU5C 3AE8D 2WU5D 3VRBD 4KX6C 1ZOYD 3AEGC 3P4RC 4YSYC 1L0VC 5C2TC 3VONA 2ACZD 4LDTA 3AE7C 3AEED 2H89D 1NEND 3P4RD 4YTNC 3AE1D 2FBWC 4YTPC 3AECC 3AE7D 3SFEC 3AE6C 3AE2C 5C3JC 3P4PC 4YTPD 3AECD 3AE8C 2WDRD 4YSXD 3AE4C 3VR9D 3VRBC 3AEDD 1ZOYC 2WP9D 4I6LA 2ACZC 4YT0D 3AE4D 2H89C 3AEEC 2WU2D 1NENC 3VRAD 3SFDD 3AE1C 3ABVC 2BS3C 4DHIB 1KF6C
chains in the Genus database with same CATH topology
2WDQD 3ABVD 1KF6D 2B76C 3AEBD 4YTMD 2WDRC 4YSZC 4YSXC 2B76D 3VR9C 3AEDC 2WP9C 1YQ3D 4YSZD 3CIRD 3AE9D 4YT0C 1YQ4D 3VRAC 2WU2C 4YXDC 3SFDC 1NEKD 2WDQC 3AE3D 4YXDD 3VR8C 2WS3D 2WDVD 2H88D 3AEBC 4YTMC 3VR8D 3AEFD 1E7PC 3AE5C 1QLBC 1YQ3C 3CIRC 3AE9C 1YQ4C 2WQYD 1KFYD 3AE5D 3AEAC 1NEKC 3P4SC 3AEAD 3AE3C 2WS3C 3P4QC 2WDVC 2H88C 3P4SD 4KX6D 1ZP0C 3AEGD 4YSYD 5C2TD 1L0VD 3AEFC 2BS2C 3P4QD 1ZP0D 4YTND 2FBWD 2BS4C 2WQYC 1KFYC 3SFED 3AE2D 3AE6D 5C3JD 3P4PD 2WU5C 3AE8D 2WU5D 3VRBD 4KX6C 1ZOYD 3AEGC 3P4RC 4YSYC 1L0VC 5C2TC 2ACZD 3AE7C 3AEED 2H89D 1NEND 3P4RD 4YTNC 3AE1D 2FBWC 4YTPC 3AECC 3AE7D 3SFEC 3AE6C 3AE2C 5C3JC 3P4PC 4YTPD 3AECD 3AE8C 2WDRD 4YSXD 3AE4C 3VR9D 3VRBC 3AEDD 1ZOYC 2WP9D 2ACZC 4YT0D 3AE4D 2H89C 3AEEC 2WU2D 1NENC 3VRAD 3SFDD 3AE1C 3ABVC 2BS3C 1KF6C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDQ D;  3ABV D;  1KF6 D;  2B76 C;  3AEB D;  4YTM D;  2WDR C;  4YSZ C;  4YSX C;  2B76 D;  3VR9 C;  3AED C;  2WP9 C;  1YQ3 D;  4YSZ D;  3CIR D;  3AE9 D;  4YT0 C;  1YQ4 D;  3VRA C;  2WU2 C;  4YXD C;  3SFD C;  1NEK D;  2WDQ C;  3AE3 D;  4YXD D;  3VR8 C;  2WS3 D;  2WDV D;  2H88 D;  3AEB C;  4YTM C;  3VR8 D;  3AEF D;  1E7P C;  3AE5 C;  1QLB C;  1YQ3 C;  3CIR C;  3AE9 C;  1YQ4 C;  2WQY D;  1KFY D;  3AE5 D;  3AEA C;  1NEK C;  3P4S C;  3AEA D;  3AE3 C;  2WS3 C;  3P4Q C;  2WDV C;  2H88 C;  3P4S D;  4KX6 D;  1ZP0 C;  3AEG D;  4YSY D;  5C2T D;  1L0V D;  3AEF C;  2BS2 C;  3P4Q D;  1ZP0 D;  4YTN D;  2FBW D;  2BS4 C;  2WQY C;  1KFY C;  3SFE D;  3AE2 D;  3AE6 D;  5C3J D;  3P4P D;  2WU5 C;  3AE8 D;  2WU5 D;  3VRB D;  4KX6 C;  1ZOY D;  3AEG C;  3P4R C;  4YSY C;  1L0V C;  5C2T C;  2ACZ D;  3AE7 C;  3AEE D;  2H89 D;  1NEN D;  3P4R D;  4YTN C;  3AE1 D;  2FBW C;  4YTP C;  3AEC C;  3AE7 D;  3SFE C;  3AE6 C;  3AE2 C;  5C3J C;  3P4P C;  4YTP D;  3AEC D;  3AE8 C;  2WDR D;  4YSX D;  3AE4 C;  3VR9 D;  3VRB C;  3AED D;  1ZOY C;  2WP9 D;  2ACZ C;  4YT0 D;  3AE4 D;  2H89 C;  3AEE C;  2WU2 D;  1NEN C;  3VRA D;  3SFD D;  3AE1 C;  3ABV C;  2BS3 C;  1KF6 C; 
#chains in the Genus database with same CATH topology
 2WDQ D;  3ABV D;  1KF6 D;  2B76 C;  3AEB D;  4YTM D;  2WDR C;  4YSZ C;  4YSX C;  2B76 D;  3VR9 C;  3AED C;  2WP9 C;  1YQ3 D;  4YSZ D;  3CIR D;  3AE9 D;  4YT0 C;  1YQ4 D;  4FJV A;  3VRA C;  2WU2 C;  4YXD C;  3SFD C;  1NEK D;  2WDQ C;  3AE3 D;  4YXD D;  3VR8 C;  2WS3 D;  2WDV D;  2H88 D;  3AEB C;  4YTM C;  3VR8 D;  3AEF D;  2ZFY A;  1E7P C;  4DDG A;  3AE5 C;  1QLB C;  1YQ3 C;  3CIR C;  3AE9 C;  1YQ4 C;  2WQY D;  1KFY D;  3AE5 D;  3AEA C;  1NEK C;  3P4S C;  3AEA D;  3AE3 C;  2WS3 C;  3P4Q C;  2WDV C;  2H88 C;  3P4S D;  4KX6 D;  1ZP0 C;  1TFF A;  3AEG D;  4YSY D;  5C2T D;  1L0V D;  4DDI A;  3AEF C;  4DHJ A;  2BS2 C;  3P4Q D;  4DHZ A;  1ZP0 D;  4YTN D;  2FBW D;  2BS4 C;  2WQY C;  1KFY C;  3SFE D;  3AE2 D;  3AE6 D;  5C3J D;  3P4P D;  2WU5 C;  3AE8 D;  2WU5 D;  3VRB D;  4KX6 C;  1ZOY D;  3AEG C;  3P4R C;  4YSY C;  1L0V C;  5C2T C;  3VON A;  2ACZ D;  4LDT A;  3AE7 C;  3AEE D;  2H89 D;  1NEN D;  3P4R D;  4YTN C;  3AE1 D;  2FBW C;  4YTP C;  3AEC C;  3AE7 D;  3SFE C;  3AE6 C;  3AE2 C;  5C3J C;  3P4P C;  4YTP D;  3AEC D;  3AE8 C;  2WDR D;  4YSX D;  3AE4 C;  3VR9 D;  3VRB C;  3AED D;  1ZOY C;  2WP9 D;  4I6L A;  2ACZ C;  4YT0 D;  3AE4 D;  2H89 C;  3AEE C;  2WU2 D;  1NEN C;  3VRA D;  3SFD D;  3AE1 C;  3ABV C;  2BS3 C;  4DHI B;  1KF6 C; 
#chains in the Genus database with same CATH homology
 2WDQ D;  3ABV D;  1KF6 D;  2B76 C;  3AEB D;  4YTM D;  2WDR C;  4YSZ C;  4YSX C;  2B76 D;  3VR9 C;  3AED C;  2WP9 C;  1YQ3 D;  4YSZ D;  3CIR D;  3AE9 D;  4YT0 C;  1YQ4 D;  3VRA C;  2WU2 C;  4YXD C;  3SFD C;  1NEK D;  2WDQ C;  3AE3 D;  4YXD D;  3VR8 C;  2WS3 D;  2WDV D;  2H88 D;  3AEB C;  4YTM C;  3VR8 D;  3AEF D;  1E7P C;  3AE5 C;  1QLB C;  1YQ3 C;  3CIR C;  3AE9 C;  1YQ4 C;  2WQY D;  1KFY D;  3AE5 D;  3AEA C;  1NEK C;  3P4S C;  3AEA D;  3AE3 C;  2WS3 C;  3P4Q C;  2WDV C;  2H88 C;  3P4S D;  4KX6 D;  1ZP0 C;  3AEG D;  4YSY D;  5C2T D;  1L0V D;  3AEF C;  2BS2 C;  3P4Q D;  1ZP0 D;  4YTN D;  2FBW D;  2BS4 C;  2WQY C;  1KFY C;  3SFE D;  3AE2 D;  3AE6 D;  5C3J D;  3P4P D;  2WU5 C;  3AE8 D;  2WU5 D;  3VRB D;  4KX6 C;  1ZOY D;  3AEG C;  3P4R C;  4YSY C;  1L0V C;  5C2T C;  2ACZ D;  3AE7 C;  3AEE D;  2H89 D;  1NEN D;  3P4R D;  4YTN C;  3AE1 D;  2FBW C;  4YTP C;  3AEC C;  3AE7 D;  3SFE C;  3AE6 C;  3AE2 C;  5C3J C;  3P4P C;  4YTP D;  3AEC D;  3AE8 C;  2WDR D;  4YSX D;  3AE4 C;  3VR9 D;  3VRB C;  3AED D;  1ZOY C;  2WP9 D;  2ACZ C;  4YT0 D;  3AE4 D;  2H89 C;  3AEE C;  2WU2 D;  1NEN C;  3VRA D;  3SFD D;  3AE1 C;  3ABV C;  2BS3 C;  1KF6 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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