2BS4 | Genus

Total Genus 107

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	107
sequence length	254
structure length	254
Chain Sequence	MTNESILESYSGVTPERKKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPINYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVILHGSVGLYRLAVKWGWFDGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQTDPNIDYKYFDYKRTH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfcb1e85b0b1a8c361baffb/pdb.gz): 1599 ms

reading 254 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

254 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 22 ms

Adding embedded #jmolscript: select ({0:253});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
publication title	Experimental Support for the E-Pathway Hypothesis of Coupled Transmembrane Electron and Proton Transfer in Dihemic Quinol:Fumarate Reductase pubmed doi rcsb
molecule keywords	QUINOL-FUMARATE REDUCTASE FLAVOPROTEIN SUBUNIT A
total genus	107
structure length	254
sequence length	254
chains with identical sequence	F
ec nomenclature
pdb deposition date	2005-05-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01127	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	2bs4C00

4YXDD 2WDVC 1L0VD 3ABVC 3VRBD 5C3JD 3AEFD 3P4PC 2ACZC 4YSZC 3AEGD 3VRAD 3AEDD 4YTMD 1ZOYC 3AE4C 4YSXD 2BS2C 1YQ4C 2WU2C 4YSZD 1ZP0D 3AEAD 3P4SC 2WQYC 2WDRD 3AE6D 2WP9C 3VR8C 1YQ3D 2BS3C 2WS3D 4KX6C 3SFED 3AE9D 4YTNC 3AE1D 3AEBC 1KF6C 3P4RC 2WDQC 1NENC 2WDVD 4YSYC 3ABVD 1E7PC 3AE3C 3P4PD 3SFDC 2ACZD 2WU5C 3VR9C 4YTND 1ZOYD 3AE4D 1NEND 1NEKC 2H89C 3AE3D 2B76C 1YQ4D 2WU2D 3P4QC 1KFYC 3AE5C 4YTPC 3AEEC 3P4SD 2WQYD 2FBWC 4YT0C 4YXDC 2WP9D 1NEKD 3VR8D 3VRBC 5C3JC 3P4QD 1KFYD 3AECC 4YTPD 3AEGC 3AE7C 3CIRC 3AEDC 1QLBC 4KX6D 5C2TC 3AEBD 2BS4C 4YSXC 1KF6D 3P4RD 2WDQD 4YSYD 3AECD 3AE7D 3CIRD 1ZP0C 3SFDD 2H88C 2WU5D 3AEAC 5C2TD 3VR9D 2WDRC 3AE8C 3AE6C 3AE2C 2H89D 1YQ3C 1L0VC 2B76D 2H88D 3AEFC 2WS3C 3AE5D 3SFEC 3AEED 3VRAC 3AE9C 3AE8D 3AE1C 2FBWD 4YTMC 4YT0D 3AE2D
chains in the Genus database with same CATH superfamily

4YXDD 2WDVC 3VONA 4DDGA 1L0VD 3ABVC 3VRBD 5C3JD 3AEFD 3P4PC 2ACZC 4YSZC 3AEGD 3VRAD 3AEDD 4YTMD 1ZOYC 3AE4C 4LDTA 4YSXD 2BS2C 1YQ4C 2WU2C 4YSZD 4DDIA 1ZP0D 3AEAD 3P4SC 2WQYC 2WDRD 3AE6D 2WP9C 3VR8C 4DHIB 4DHZA 1YQ3D 2BS3C 2ZFYA 2WS3D 4KX6C 3SFED 3AE9D 4YTNC 3AE1D 3AEBC 1KF6C 3P4RC 2WDQC 1NENC 2WDVD 4YSYC 3ABVD 1E7PC 3AE3C 3P4PD 3SFDC 2ACZD 2WU5C 3VR9C 4YTND 4DHJA 1ZOYD 3AE4D 1NEND 1NEKC 2H89C 3AE3D 2B76C 1YQ4D 2WU2D 3P4QC 1KFYC 3AE5C 4YTPC 1TFFA 3AEEC 3P4SD 2WQYD 2FBWC 4YT0C 4YXDC 2WP9D 1NEKD 3VR8D 3VRBC 5C3JC 3P4QD 1KFYD 3AECC 4YTPD 3AEGC 3AE7C 3CIRC 3AEDC 1QLBC 4KX6D 4FJVA 4I6LA 5C2TC 3AEBD 2BS4C 4YSXC 1KF6D 3P4RD 2WDQD 4YSYD 3AECD 3AE7D 3CIRD 1ZP0C 3SFDD 2H88C 2WU5D 3AEAC 5C2TD 3VR9D 2WDRC 3AE8C 3AE6C 3AE2C 2H89D 1YQ3C 1L0VC 2B76D 2H88D 3AEFC 2WS3C 3AE5D 3SFEC 3AEED 3VRAC 3AE9C 3AE8D 3AE1C 2FBWD 4YTMC 4YT0D 3AE2D
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4YXD D;  2WDV C;  1L0V D;  3ABV C;  3VRB D;  5C3J D;  3AEF D;  3P4P C;  2ACZ C;  4YSZ C;  3AEG D;  3VRA D;  3AED D;  4YTM D;  1ZOY C;  3AE4 C;  4YSX D;  2BS2 C;  1YQ4 C;  2WU2 C;  4YSZ D;  1ZP0 D;  3AEA D;  3P4S C;  2WQY C;  2WDR D;  3AE6 D;  2WP9 C;  3VR8 C;  1YQ3 D;  2BS3 C;  2WS3 D;  4KX6 C;  3SFE D;  3AE9 D;  4YTN C;  3AE1 D;  3AEB C;  1KF6 C;  3P4R C;  2WDQ C;  1NEN C;  2WDV D;  4YSY C;  3ABV D;  1E7P C;  3AE3 C;  3P4P D;  3SFD C;  2ACZ D;  2WU5 C;  3VR9 C;  4YTN D;  1ZOY D;  3AE4 D;  1NEN D;  1NEK C;  2H89 C;  3AE3 D;  2B76 C;  1YQ4 D;  2WU2 D;  3P4Q C;  1KFY C;  3AE5 C;  4YTP C;  3AEE C;  3P4S D;  2WQY D;  2FBW C;  4YT0 C;  4YXD C;  2WP9 D;  1NEK D;  3VR8 D;  3VRB C;  5C3J C;  3P4Q D;  1KFY D;  3AEC C;  4YTP D;  3AEG C;  3AE7 C;  3CIR C;  3AED C;  1QLB C;  4KX6 D;  5C2T C;  3AEB D;  2BS4 C;  4YSX C;  1KF6 D;  3P4R D;  2WDQ D;  4YSY D;  3AEC D;  3AE7 D;  3CIR D;  1ZP0 C;  3SFD D;  2H88 C;  2WU5 D;  3AEA C;  5C2T D;  3VR9 D;  2WDR C;  3AE8 C;  3AE6 C;  3AE2 C;  2H89 D;  1YQ3 C;  1L0V C;  2B76 D;  2H88 D;  3AEF C;  2WS3 C;  3AE5 D;  3SFE C;  3AEE D;  3VRA C;  3AE9 C;  3AE8 D;  3AE1 C;  2FBW D;  4YTM C;  4YT0 D;  3AE2 D; 
#chains in the Genus database with same CATH topology
 4YXD D;  2WDV C;  3VON A;  4DDG A;  1L0V D;  3ABV C;  3VRB D;  5C3J D;  3AEF D;  3P4P C;  2ACZ C;  4YSZ C;  3AEG D;  3VRA D;  3AED D;  4YTM D;  1ZOY C;  3AE4 C;  4LDT A;  4YSX D;  2BS2 C;  1YQ4 C;  2WU2 C;  4YSZ D;  4DDI A;  1ZP0 D;  3AEA D;  3P4S C;  2WQY C;  2WDR D;  3AE6 D;  2WP9 C;  3VR8 C;  4DHI B;  4DHZ A;  1YQ3 D;  2BS3 C;  2ZFY A;  2WS3 D;  4KX6 C;  3SFE D;  3AE9 D;  4YTN C;  3AE1 D;  3AEB C;  1KF6 C;  3P4R C;  2WDQ C;  1NEN C;  2WDV D;  4YSY C;  3ABV D;  1E7P C;  3AE3 C;  3P4P D;  3SFD C;  2ACZ D;  2WU5 C;  3VR9 C;  4YTN D;  4DHJ A;  1ZOY D;  3AE4 D;  1NEN D;  1NEK C;  2H89 C;  3AE3 D;  2B76 C;  1YQ4 D;  2WU2 D;  3P4Q C;  1KFY C;  3AE5 C;  4YTP C;  1TFF A;  3AEE C;  3P4S D;  2WQY D;  2FBW C;  4YT0 C;  4YXD C;  2WP9 D;  1NEK D;  3VR8 D;  3VRB C;  5C3J C;  3P4Q D;  1KFY D;  3AEC C;  4YTP D;  3AEG C;  3AE7 C;  3CIR C;  3AED C;  1QLB C;  4KX6 D;  4FJV A;  4I6L A;  5C2T C;  3AEB D;  2BS4 C;  4YSX C;  1KF6 D;  3P4R D;  2WDQ D;  4YSY D;  3AEC D;  3AE7 D;  3CIR D;  1ZP0 C;  3SFD D;  2H88 C;  2WU5 D;  3AEA C;  5C2T D;  3VR9 D;  2WDR C;  3AE8 C;  3AE6 C;  3AE2 C;  2H89 D;  1YQ3 C;  1L0V C;  2B76 D;  2H88 D;  3AEF C;  2WS3 C;  3AE5 D;  3SFE C;  3AEE D;  3VRA C;  3AE9 C;  3AE8 D;  3AE1 C;  2FBW D;  4YTM C;  4YT0 D;  3AE2 D; 
#chains in the Genus database with same CATH homology
 4YXD D;  2WDV C;  1L0V D;  3ABV C;  3VRB D;  5C3J D;  3AEF D;  3P4P C;  2ACZ C;  4YSZ C;  3AEG D;  3VRA D;  3AED D;  4YTM D;  1ZOY C;  3AE4 C;  4YSX D;  2BS2 C;  1YQ4 C;  2WU2 C;  4YSZ D;  1ZP0 D;  3AEA D;  3P4S C;  2WQY C;  2WDR D;  3AE6 D;  2WP9 C;  3VR8 C;  1YQ3 D;  2BS3 C;  2WS3 D;  4KX6 C;  3SFE D;  3AE9 D;  4YTN C;  3AE1 D;  3AEB C;  1KF6 C;  3P4R C;  2WDQ C;  1NEN C;  2WDV D;  4YSY C;  3ABV D;  1E7P C;  3AE3 C;  3P4P D;  3SFD C;  2ACZ D;  2WU5 C;  3VR9 C;  4YTN D;  1ZOY D;  3AE4 D;  1NEN D;  1NEK C;  2H89 C;  3AE3 D;  2B76 C;  1YQ4 D;  2WU2 D;  3P4Q C;  1KFY C;  3AE5 C;  4YTP C;  3AEE C;  3P4S D;  2WQY D;  2FBW C;  4YT0 C;  4YXD C;  2WP9 D;  1NEK D;  3VR8 D;  3VRB C;  5C3J C;  3P4Q D;  1KFY D;  3AEC C;  4YTP D;  3AEG C;  3AE7 C;  3CIR C;  3AED C;  1QLB C;  4KX6 D;  5C2T C;  3AEB D;  2BS4 C;  4YSX C;  1KF6 D;  3P4R D;  2WDQ D;  4YSY D;  3AEC D;  3AE7 D;  3CIR D;  1ZP0 C;  3SFD D;  2H88 C;  2WU5 D;  3AEA C;  5C2T D;  3VR9 D;  2WDR C;  3AE8 C;  3AE6 C;  3AE2 C;  2H89 D;  1YQ3 C;  1L0V C;  2B76 D;  2H88 D;  3AEF C;  2WS3 C;  3AE5 D;  3SFE C;  3AEE D;  3VRA C;  3AE9 C;  3AE8 D;  3AE1 C;  2FBW D;  4YTM C;  4YT0 D;  3AE2 D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2BS4C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations