The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
101
|
structure length |
101
|
Chain Sequence |
SKAASLHWTSERAVSALLLGLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFTGLCYFNYYDVGICKAVAMLWSI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
3-nitropropionic acid is a suicide inhibitor of mitochondrial respiration that, upon oxidation by complex II, forms a covalent adduct with a catalytic base arginine in the active site of the enzyme.
pubmed doi rcsb |
| molecule keywords |
Succinate dehydrogenase flavoprotein subunit
|
| molecule tags |
Oxidoreductase
|
| total genus |
42
|
| structure length |
101
|
| sequence length |
101
|
| chains with identical sequence |
Q
|
| ec nomenclature | |
| pdb deposition date | 2005-12-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | 3 helical TM bundles of succinate and fumarate reductases | Fumarate reductase/succinate dehydrogenase, transmembrane subunit |
#chains in the Genus database with same CATH superfamily 3VR8 C; 4YTM C; 3AE6 D; 3AE7 D; 1ZOY D; 3AE9 D; 2ACZ C; 3AE6 C; 3AE7 C; 1ZOY C; 3AEB C; 3AEF D; 3AE9 C; 3AEF C; 2BS2 C; 2BS4 C; 4KX6 D; 5C3J D; 4YTN D; 1L0V D; 2WDR D; 1QLB C; 5C3J C; 2H89 D; 4YTN C; 2WS3 D; 2WDR C; 2WU2 D; 2H89 C; 2WS3 C; 2WU2 C; 3P4S D; 4YTP D; 2ACZ D; 4YSX D; 3AEB D; 3P4S C; 4YTP C; 1E7P C; 4YSX C; 1KF6 D; 1NEK D; 3AEE D; 1KF6 C; 4YT0 D; 1NEK C; 1KFY D; 3AEG D; 3AEE C; 2WP9 D; 4YT0 C; 1KFY C; 3P4Q C; 3AE8 D; 3AEG C; 5C2T D; 2B76 D; 3AE1 D; 2WP9 C; 3AE4 D; 3AE8 C; 5C2T C; 2B76 C; 3AE1 C; 3AED D; 3AEC D; 3AE4 C; 3AED C; 2WU5 C; 3AEC C; 1NEN D; 3P4P D; 2WQY D; 3ABV C; 1NEN C; 1ZP0 D; 3P4P C; 2WQY C; 1ZP0 C; 2WDV D; 2WDQ D; 2BS3 C; 2WDV C; 3AE3 D; 2WDQ C; 3P4Q D; 3AE3 C; 2H88 C; 3P4R D; 3AE5 C; 3VRA D; 3CIR D; 3P4R C; 3AE2 D; 2WU5 D; 4YSZ D; 3VRA C; 3CIR C; 3SFD D; 3VR9 D; 1YQ3 D; 3VRB D; 3AE2 C; 4YSZ C; 3ABV D; 4YSY D; 3SFD C; 3VR9 C; 1YQ3 C; 3VRB C; 4YSY C; 3SFE D; 3SFE C; 1YQ4 D; 2FBW D; 4YXD D; 1YQ4 C; 3AEA D; 2FBW C; 2H88 D; 4YXD C; 4KX6 C; 3AEA C; 3AE5 D; 3VR8 D; 1L0V C; 4YTM D; #chains in the Genus database with same CATH topology 3VR8 C; 4YTM C; 3AE6 D; 3AE7 D; 1ZOY D; 3AE9 D; 2ACZ C; 3AE6 C; 3AE7 C; 1ZOY C; 3AEB C; 3AEF D; 3AE9 C; 3AEF C; 2BS2 C; 2BS4 C; 4KX6 D; 5C3J D; 4YTN D; 2ZFY A; 1L0V D; 2WDR D; 1QLB C; 5C3J C; 2H89 D; 4YTN C; 2WS3 D; 2WDR C; 2WU2 D; 2H89 C; 4I6L A; 2WS3 C; 2WU2 C; 4DHI B; 3P4S D; 4YTP D; 2ACZ D; 4YSX D; 3AEB D; 3P4S C; 4YTP C; 1E7P C; 4YSX C; 1KF6 D; 1NEK D; 3AEE D; 1KF6 C; 4YT0 D; 1NEK C; 1KFY D; 4DHJ A; 3AEG D; 3AEE C; 2WP9 D; 4YT0 C; 1KFY C; 3P4Q C; 3AE8 D; 3AEG C; 5C2T D; 2B76 D; 3AE1 D; 2WP9 C; 3AE4 D; 3AE8 C; 5C2T C; 2B76 C; 3AE1 C; 3AED D; 3AEC D; 3AE4 C; 3AED C; 2WU5 C; 3AEC C; 1NEN D; 4DDG A; 3P4P D; 2WQY D; 3ABV C; 1NEN C; 1ZP0 D; 4DHZ A; 3P4P C; 2WQY C; 1ZP0 C; 2WDV D; 2WDQ D; 2BS3 C; 2WDV C; 3AE3 D; 2WDQ C; 3P4Q D; 3AE3 C; 2H88 C; 3P4R D; 1TFF A; 3AE5 C; 3VRA D; 3CIR D; 3P4R C; 3AE2 D; 2WU5 D; 4FJV A; 4YSZ D; 3VRA C; 3CIR C; 3SFD D; 3VR9 D; 1YQ3 D; 3VON A; 3AE2 C; 3VRB D; 4YSZ C; 3ABV D; 4YSY D; 3SFD C; 3VR9 C; 1YQ3 C; 3VRB C; 4DDI A; 4YSY C; 3SFE D; 3SFE C; 1YQ4 D; 2FBW D; 4YXD D; 1YQ4 C; 4LDT A; 3AEA D; 2FBW C; 2H88 D; 4YXD C; 4KX6 C; 3AEA C; 3AE5 D; 3VR8 D; 1L0V C; 4YTM D; #chains in the Genus database with same CATH homology 3VR8 C; 4YTM C; 3AE6 D; 3AE7 D; 1ZOY D; 3AE9 D; 2ACZ C; 3AE6 C; 3AE7 C; 1ZOY C; 3AEB C; 3AEF D; 3AE9 C; 3AEF C; 2BS2 C; 2BS4 C; 4KX6 D; 5C3J D; 4YTN D; 1L0V D; 2WDR D; 1QLB C; 5C3J C; 2H89 D; 4YTN C; 2WS3 D; 2WDR C; 2WU2 D; 2H89 C; 2WS3 C; 2WU2 C; 3P4S D; 4YTP D; 2ACZ D; 4YSX D; 3AEB D; 3P4S C; 4YTP C; 1E7P C; 4YSX C; 1KF6 D; 1NEK D; 3AEE D; 1KF6 C; 4YT0 D; 1NEK C; 1KFY D; 3AEG D; 3AEE C; 2WP9 D; 4YT0 C; 1KFY C; 3P4Q C; 3AE8 D; 3AEG C; 5C2T D; 2B76 D; 3AE1 D; 2WP9 C; 3AE4 D; 3AE8 C; 5C2T C; 2B76 C; 3AE1 C; 3AED D; 3AEC D; 3AE4 C; 3AED C; 2WU5 C; 3AEC C; 1NEN D; 3P4P D; 2WQY D; 3ABV C; 1NEN C; 1ZP0 D; 3P4P C; 2WQY C; 1ZP0 C; 2WDV D; 2WDQ D; 2BS3 C; 2WDV C; 3AE3 D; 2WDQ C; 3P4Q D; 3AE3 C; 2H88 C; 3P4R D; 3AE5 C; 3VRA D; 3CIR D; 3P4R C; 3AE2 D; 2WU5 D; 4YSZ D; 3VRA C; 3CIR C; 3SFD D; 3VR9 D; 1YQ3 D; 3VRB D; 3AE2 C; 4YSZ C; 3ABV D; 4YSY D; 3SFD C; 3VR9 C; 1YQ3 C; 3VRB C; 4YSY C; 3SFE D; 3SFE C; 1YQ4 D; 2FBW D; 4YXD D; 1YQ4 C; 3AEA D; 2FBW C; 2H88 D; 4YXD C; 4KX6 C; 3AEA C; 3AE5 D; 3VR8 D; 1L0V C; 4YTM D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
