2WDQC

E. coli succinate:quinone oxidoreductase (sqr) with carboxin bound
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
121
structure length
121
Chain Sequence
QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (55-66)AH4 (103-127)AH1 (22-52)AH3 (68-96)TVIII1 (97-100)EMPTY3H1 (15-17)Updating...
connected with : NaN
publication title Structure of Escherichia coli succinate:quinone oxidoreductase with an occupied and empty quinone-binding site.
pubmed doi rcsb
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
molecule tags Oxidoreductase
source organism Escherichia coli
total genus 48
structure length 121
sequence length 121
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wdqC00
4YTNC 2FBWC 1L0VD 3AE5C 3P4RC 1NENC 3VR8D 2WDQC 3AE4C 3P4PD 3SFEC 3AE1C 4YTND 4KX6D 3CIRC 1KF6C 3AE5D 1YQ3C 1NEND 5C2TD 3AEEC 3SFED 3VR9C 3AECD 2H88C 3ABVC 1ZP0D 4YTPC 3AEFD 4YSZD 2WU5C 1NEKD 2ACZC 2WQYC 3P4SC 2H88D 3ABVD 3AE6D 1KFYD 3AE3D 2FBWD 4YSXC 3AE9C 3AEGC 4YT0C 3P4RD 3AE7C 2WDQD 1ZOYC 3AE2C 3AEDC 3AE4D 3SFDC 2WU2C 2B76C 3AE1D 3AE8C 5C3JC 4YSXD 4YXDC 2WDRC 3CIRD 1KF6D 2WDVC 1YQ3D 4YT0D 3AEBC 4YSYC 1ZOYD 4YTMC 3AE2D 1YQ4C 3AEED 2BS4C 3AE8D 3VR9D 2WS3C 2WP9C 2H89C 4YTPD 3AEAC 3P4QC 4KX6C 4YSYD 1YQ4D 2WU5D 2ACZD 2WQYD 3P4SD 2WS3D 2H89D 3AEAD 3P4PC 3AE9D 2BS3C 3VRAC 3AEGD 1E7PC 2BS2C 3AE7D 3AEDD 3SFDD 5C2TC 2WU2D 2B76D 5C3JD 3VRBC 4YXDD 2WDRD 1QLBC 2WDVD 3AECC 1ZP0C 3VRAD 3AEBD 3AEFC 4YSZC 4YTMD 3VRBD 1NEKC 1L0VC 2WP9D 3AE6C 1KFYC 3VR8C 3P4QD 3AE3C
chains in the Genus database with same CATH superfamily
4YTNC 2FBWC 1L0VD 3AE5C 3P4RC 4DHJA 1NENC 3VR8D 2WDQC 3AE4C 3P4PD 3SFEC 3AE1C 4YTND 4KX6D 3CIRC 1KF6C 3AE5D 1YQ3C 1NEND 4DHIB 5C2TD 3AEEC 3SFED 3VR9C 3AECD 2H88C 3ABVC 1ZP0D 4LDTA 4YTPC 3AEFD 4YSZD 3VONA 2WU5C 1NEKD 2ACZC 2WQYC 3P4SC 2H88D 3ABVD 3AE6D 1KFYD 3AE3D 2FBWD 4YSXC 4DHZA 3AE9C 3AEGC 4YT0C 3P4RD 3AE7C 2WDQD 1ZOYC 3AE2C 3AEDC 3AE4D 3SFDC 2WU2C 2B76C 3AE1D 3AE8C 5C3JC 4YSXD 4YXDC 2WDRC 3CIRD 1KF6D 2WDVC 4I6LA 1YQ3D 4YT0D 3AEBC 4YSYC 1ZOYD 4YTMC 3AE2D 1YQ4C 3AEED 2BS4C 3AE8D 3VR9D 2WS3C 2WP9C 2H89C 4YTPD 3AEAC 3P4QC 4KX6C 4YSYD 1YQ4D 2WU5D 2ACZD 4FJVA 2WQYD 3P4SD 4DDGA 2WS3D 2H89D 3AEAD 3P4PC 3AE9D 2ZFYA 2BS3C 3VRAC 3AEGD 1E7PC 2BS2C 3AE7D 3AEDD 3SFDD 5C2TC 2WU2D 2B76D 5C3JD 3VRBC 4YXDD 2WDRD 1QLBC 2WDVD 3AECC 1ZP0C 3VRAD 3AEBD 3AEFC 4YSZC 4YTMD 4DDIA 3VRBD 1NEKC 1TFFA 1L0VC 2WP9D 3AE6C 1KFYC 3VR8C 3P4QD 3AE3C
chains in the Genus database with same CATH topology
4YTNC 2FBWC 1L0VD 3AE5C 3P4RC 1NENC 3VR8D 2WDQC 3AE4C 3P4PD 3SFEC 3AE1C 4YTND 4KX6D 3CIRC 1KF6C 3AE5D 1YQ3C 1NEND 5C2TD 3AEEC 3SFED 3VR9C 3AECD 2H88C 3ABVC 1ZP0D 4YTPC 3AEFD 4YSZD 2WU5C 1NEKD 2ACZC 2WQYC 3P4SC 2H88D 3ABVD 3AE6D 1KFYD 3AE3D 2FBWD 4YSXC 3AE9C 3AEGC 4YT0C 3P4RD 3AE7C 2WDQD 1ZOYC 3AE2C 3AEDC 3AE4D 3SFDC 2WU2C 2B76C 3AE1D 3AE8C 5C3JC 4YSXD 4YXDC 2WDRC 3CIRD 1KF6D 2WDVC 1YQ3D 4YT0D 3AEBC 4YSYC 1ZOYD 4YTMC 3AE2D 1YQ4C 3AEED 2BS4C 3AE8D 3VR9D 2WS3C 2WP9C 2H89C 4YTPD 3AEAC 3P4QC 4KX6C 4YSYD 1YQ4D 2WU5D 2ACZD 2WQYD 3P4SD 2WS3D 2H89D 3AEAD 3P4PC 3AE9D 2BS3C 3VRAC 3AEGD 1E7PC 2BS2C 3AE7D 3AEDD 3SFDD 5C2TC 2WU2D 2B76D 5C3JD 3VRBC 4YXDD 2WDRD 1QLBC 2WDVD 3AECC 1ZP0C 3VRAD 3AEBD 3AEFC 4YSZC 4YTMD 3VRBD 1NEKC 1L0VC 2WP9D 3AE6C 1KFYC 3VR8C 3P4QD 3AE3C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YTN C;  2FBW C;  1L0V D;  3AE5 C;  3P4R C;  1NEN C;  3VR8 D;  2WDQ C;  3AE4 C;  3P4P D;  3SFE C;  3AE1 C;  4YTN D;  4KX6 D;  3CIR C;  1KF6 C;  3AE5 D;  1YQ3 C;  1NEN D;  5C2T D;  3AEE C;  3SFE D;  3VR9 C;  3AEC D;  2H88 C;  3ABV C;  1ZP0 D;  4YTP C;  3AEF D;  4YSZ D;  2WU5 C;  1NEK D;  2ACZ C;  2WQY C;  3P4S C;  2H88 D;  3ABV D;  3AE6 D;  1KFY D;  3AE3 D;  2FBW D;  4YSX C;  3AE9 C;  3AEG C;  4YT0 C;  3P4R D;  3AE7 C;  2WDQ D;  1ZOY C;  3AE2 C;  3AED C;  3AE4 D;  3SFD C;  2WU2 C;  2B76 C;  3AE1 D;  3AE8 C;  5C3J C;  4YSX D;  4YXD C;  2WDR C;  3CIR D;  1KF6 D;  2WDV C;  1YQ3 D;  4YT0 D;  3AEB C;  4YSY C;  1ZOY D;  4YTM C;  3AE2 D;  1YQ4 C;  3AEE D;  2BS4 C;  3AE8 D;  3VR9 D;  2WS3 C;  2WP9 C;  2H89 C;  4YTP D;  3AEA C;  3P4Q C;  4KX6 C;  4YSY D;  1YQ4 D;  2WU5 D;  2ACZ D;  2WQY D;  3P4S D;  2WS3 D;  2H89 D;  3AEA D;  3P4P C;  3AE9 D;  2BS3 C;  3VRA C;  3AEG D;  1E7P C;  2BS2 C;  3AE7 D;  3AED D;  3SFD D;  5C2T C;  2WU2 D;  2B76 D;  5C3J D;  3VRB C;  4YXD D;  2WDR D;  1QLB C;  2WDV D;  3AEC C;  1ZP0 C;  3VRA D;  3AEB D;  3AEF C;  4YSZ C;  4YTM D;  3VRB D;  1NEK C;  1L0V C;  2WP9 D;  3AE6 C;  1KFY C;  3VR8 C;  3P4Q D;  3AE3 C; 
#chains in the Genus database with same CATH topology
 4YTN C;  2FBW C;  1L0V D;  3AE5 C;  3P4R C;  4DHJ A;  1NEN C;  3VR8 D;  2WDQ C;  3AE4 C;  3P4P D;  3SFE C;  3AE1 C;  4YTN D;  4KX6 D;  3CIR C;  1KF6 C;  3AE5 D;  1YQ3 C;  1NEN D;  4DHI B;  5C2T D;  3AEE C;  3SFE D;  3VR9 C;  3AEC D;  2H88 C;  3ABV C;  1ZP0 D;  4LDT A;  4YTP C;  3AEF D;  4YSZ D;  3VON A;  2WU5 C;  1NEK D;  2ACZ C;  2WQY C;  3P4S C;  2H88 D;  3ABV D;  3AE6 D;  1KFY D;  3AE3 D;  2FBW D;  4YSX C;  4DHZ A;  3AE9 C;  3AEG C;  4YT0 C;  3P4R D;  3AE7 C;  2WDQ D;  1ZOY C;  3AE2 C;  3AED C;  3AE4 D;  3SFD C;  2WU2 C;  2B76 C;  3AE1 D;  3AE8 C;  5C3J C;  4YSX D;  4YXD C;  2WDR C;  3CIR D;  1KF6 D;  2WDV C;  4I6L A;  1YQ3 D;  4YT0 D;  3AEB C;  4YSY C;  1ZOY D;  4YTM C;  3AE2 D;  1YQ4 C;  3AEE D;  2BS4 C;  3AE8 D;  3VR9 D;  2WS3 C;  2WP9 C;  2H89 C;  4YTP D;  3AEA C;  3P4Q C;  4KX6 C;  4YSY D;  1YQ4 D;  2WU5 D;  2ACZ D;  4FJV A;  2WQY D;  3P4S D;  4DDG A;  2WS3 D;  2H89 D;  3AEA D;  3P4P C;  3AE9 D;  2ZFY A;  2BS3 C;  3VRA C;  3AEG D;  1E7P C;  2BS2 C;  3AE7 D;  3AED D;  3SFD D;  5C2T C;  2WU2 D;  2B76 D;  5C3J D;  3VRB C;  4YXD D;  2WDR D;  1QLB C;  2WDV D;  3AEC C;  1ZP0 C;  3VRA D;  3AEB D;  3AEF C;  4YSZ C;  4YTM D;  4DDI A;  3VRB D;  1NEK C;  1TFF A;  1L0V C;  2WP9 D;  3AE6 C;  1KFY C;  3VR8 C;  3P4Q D;  3AE3 C; 
#chains in the Genus database with same CATH homology
 4YTN C;  2FBW C;  1L0V D;  3AE5 C;  3P4R C;  1NEN C;  3VR8 D;  2WDQ C;  3AE4 C;  3P4P D;  3SFE C;  3AE1 C;  4YTN D;  4KX6 D;  3CIR C;  1KF6 C;  3AE5 D;  1YQ3 C;  1NEN D;  5C2T D;  3AEE C;  3SFE D;  3VR9 C;  3AEC D;  2H88 C;  3ABV C;  1ZP0 D;  4YTP C;  3AEF D;  4YSZ D;  2WU5 C;  1NEK D;  2ACZ C;  2WQY C;  3P4S C;  2H88 D;  3ABV D;  3AE6 D;  1KFY D;  3AE3 D;  2FBW D;  4YSX C;  3AE9 C;  3AEG C;  4YT0 C;  3P4R D;  3AE7 C;  2WDQ D;  1ZOY C;  3AE2 C;  3AED C;  3AE4 D;  3SFD C;  2WU2 C;  2B76 C;  3AE1 D;  3AE8 C;  5C3J C;  4YSX D;  4YXD C;  2WDR C;  3CIR D;  1KF6 D;  2WDV C;  1YQ3 D;  4YT0 D;  3AEB C;  4YSY C;  1ZOY D;  4YTM C;  3AE2 D;  1YQ4 C;  3AEE D;  2BS4 C;  3AE8 D;  3VR9 D;  2WS3 C;  2WP9 C;  2H89 C;  4YTP D;  3AEA C;  3P4Q C;  4KX6 C;  4YSY D;  1YQ4 D;  2WU5 D;  2ACZ D;  2WQY D;  3P4S D;  2WS3 D;  2H89 D;  3AEA D;  3P4P C;  3AE9 D;  2BS3 C;  3VRA C;  3AEG D;  1E7P C;  2BS2 C;  3AE7 D;  3AED D;  3SFD D;  5C2T C;  2WU2 D;  2B76 D;  5C3J D;  3VRB C;  4YXD D;  2WDR D;  1QLB C;  2WDV D;  3AEC C;  1ZP0 C;  3VRA D;  3AEB D;  3AEF C;  4YSZ C;  4YTM D;  3VRB D;  1NEK C;  1L0V C;  2WP9 D;  3AE6 C;  1KFY C;  3VR8 C;  3P4Q D;  3AE3 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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