2WDQC

E. coli succinate:quinone oxidoreductase (sqr) with carboxin bound
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
121
structure length
121
Chain Sequence
QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (55-66)AH4 (103-127)AH1 (22-52)AH3 (68-96)TVIII1 (97-100)EMPTY3H1 (15-17)Updating...
connected with : NaN
publication title Structure of Escherichia coli succinate:quinone oxidoreductase with an occupied and empty quinone-binding site.
pubmed doi rcsb
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
molecule tags Oxidoreductase
source organism Escherichia coli
total genus 48
structure length 121
sequence length 121
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wdqC00
3AE3D 3P4PC 3AE8D 3AECD 2WU2D 2H88D 1YQ4D 3AE5C 3P4RD 4YSXC 3P4QC 3VRAC 4YTMC 3AEFD 4YTMD 1L0VC 4YT0C 3VR8C 3P4SC 4KX6D 3AE4D 1NEKC 2B76D 1NENC 1E7PC 4YSYD 2FBWD 4YSZD 3ABVC 2WS3C 1QLBC 3CIRD 3AEDC 4YTPD 3AEBC 1ZOYC 2WDQD 1YQ3C 3AE9C 3P4PD 3SFDC 1YQ3D 3AE5D 4YSXD 1KF6C 4YTNC 3P4QD 3VRAD 4YXDC 4YXDD 1L0VD 2BS3C 4YT0D 3VR8D 3P4SD 5C2TC 2WP9C 3AE6C 1NEKD 1NEND 3VR9C 2WQYC 3ABVD 3AEGC 3VR9D 2WS3D 2ACZC 2WQYD 3AEBD 3AEDD 1ZOYD 2WDRC 3AE9D 3AEEC 1ZP0C 3SFDD 3AEED 1ZP0D 3AE7C 3AEAC 3SFEC 1KF6D 3AE2C 3AE1C 4YTND 5C3JC 2WU5C 3AE2D 2WDVC 3VRBC 2H89C 5C2TD 3AE8C 2WP9D 3AE6D 3AECC 2H88C 1YQ4C 3P4RC 1KFYC 3AEFC 3AEGD 1KFYD 2ACZD 4KX6C 3AE4C 2WDRD 2BS4C 2B76C 3AE7D 2FBWC 3AEAD 4YSYC 4YSZC 3SFED 5C3JD 3AE1D 2WU5D 2WDVD 2BS2C 3CIRC 4YTPC 3VRBD 3AE3C 2H89D 2WDQC 2WU2C
chains in the Genus database with same CATH superfamily
3AE3D 3P4PC 3AE8D 3AECD 2WU2D 2H88D 1YQ4D 2ZFYA 3AE5C 3P4RD 4YSXC 3P4QC 4DHJA 3VRAC 4YTMC 3AEFD 4YTMD 1L0VC 4YT0C 3VR8C 3P4SC 4KX6D 3AE4D 1NEKC 2B76D 1NENC 1E7PC 4YSYD 2FBWD 4YSZD 3ABVC 2WS3C 4FJVA 1QLBC 3CIRD 3AEDC 4YTPD 3AEBC 1ZOYC 2WDQD 1YQ3C 3AE9C 3P4PD 3SFDC 1YQ3D 3AE5D 4YSXD 1KF6C 4YTNC 3P4QD 4DDIA 3VRAD 4YXDC 4YXDD 1L0VD 3VONA 2BS3C 4YT0D 3VR8D 3P4SD 5C2TC 2WP9C 3AE6C 1NEKD 1NEND 4I6LA 3VR9C 4DDGA 2WQYC 3ABVD 3AEGC 3VR9D 2WS3D 2ACZC 2WQYD 3AEBD 3AEDD 1ZOYD 2WDRC 3AE9D 3AEEC 1ZP0C 3SFDD 3AEED 1ZP0D 3AE7C 3AEAC 3SFEC 1KF6D 3AE2C 3AE1C 4YTND 5C3JC 2WU5C 3AE2D 2WDVC 3VRBC 2H89C 5C2TD 3AE8C 2WP9D 3AE6D 3AECC 2H88C 1YQ4C 3P4RC 1KFYC 4LDTA 3AEFC 3AEGD 1KFYD 2ACZD 4DHIB 4KX6C 3AE4C 2WDRD 4DHZA 2BS4C 2B76C 3AE7D 2FBWC 3AEAD 4YSYC 4YSZC 3SFED 5C3JD 3AE1D 2WU5D 1TFFA 2WDVD 2BS2C 3CIRC 4YTPC 3VRBD 3AE3C 2H89D 2WDQC 2WU2C
chains in the Genus database with same CATH topology
3AE3D 3P4PC 3AE8D 3AECD 2WU2D 2H88D 1YQ4D 3AE5C 3P4RD 4YSXC 3P4QC 3VRAC 4YTMC 3AEFD 4YTMD 1L0VC 4YT0C 3VR8C 3P4SC 4KX6D 3AE4D 1NEKC 2B76D 1NENC 1E7PC 4YSYD 2FBWD 4YSZD 3ABVC 2WS3C 1QLBC 3CIRD 3AEDC 4YTPD 3AEBC 1ZOYC 2WDQD 1YQ3C 3AE9C 3P4PD 3SFDC 1YQ3D 3AE5D 4YSXD 1KF6C 4YTNC 3P4QD 3VRAD 4YXDC 4YXDD 1L0VD 2BS3C 4YT0D 3VR8D 3P4SD 5C2TC 2WP9C 3AE6C 1NEKD 1NEND 3VR9C 2WQYC 3ABVD 3AEGC 3VR9D 2WS3D 2ACZC 2WQYD 3AEBD 3AEDD 1ZOYD 2WDRC 3AE9D 3AEEC 1ZP0C 3SFDD 3AEED 1ZP0D 3AE7C 3AEAC 3SFEC 1KF6D 3AE2C 3AE1C 4YTND 5C3JC 2WU5C 3AE2D 2WDVC 3VRBC 2H89C 5C2TD 3AE8C 2WP9D 3AE6D 3AECC 2H88C 1YQ4C 3P4RC 1KFYC 3AEFC 3AEGD 1KFYD 2ACZD 4KX6C 3AE4C 2WDRD 2BS4C 2B76C 3AE7D 2FBWC 3AEAD 4YSYC 4YSZC 3SFED 5C3JD 3AE1D 2WU5D 2WDVD 2BS2C 3CIRC 4YTPC 3VRBD 3AE3C 2H89D 2WDQC 2WU2C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE3 D;  3P4P C;  3AE8 D;  3AEC D;  2WU2 D;  2H88 D;  1YQ4 D;  3AE5 C;  3P4R D;  4YSX C;  3P4Q C;  3VRA C;  4YTM C;  3AEF D;  4YTM D;  1L0V C;  4YT0 C;  3VR8 C;  3P4S C;  4KX6 D;  3AE4 D;  1NEK C;  2B76 D;  1NEN C;  1E7P C;  4YSY D;  2FBW D;  4YSZ D;  3ABV C;  2WS3 C;  1QLB C;  3CIR D;  3AED C;  4YTP D;  3AEB C;  1ZOY C;  2WDQ D;  1YQ3 C;  3AE9 C;  3P4P D;  3SFD C;  1YQ3 D;  3AE5 D;  4YSX D;  1KF6 C;  4YTN C;  3P4Q D;  3VRA D;  4YXD C;  4YXD D;  1L0V D;  2BS3 C;  4YT0 D;  3VR8 D;  3P4S D;  5C2T C;  2WP9 C;  3AE6 C;  1NEK D;  1NEN D;  3VR9 C;  2WQY C;  3ABV D;  3AEG C;  3VR9 D;  2WS3 D;  2ACZ C;  2WQY D;  3AEB D;  3AED D;  1ZOY D;  2WDR C;  3AE9 D;  3AEE C;  1ZP0 C;  3SFD D;  3AEE D;  1ZP0 D;  3AE7 C;  3AEA C;  3SFE C;  1KF6 D;  3AE2 C;  3AE1 C;  4YTN D;  5C3J C;  2WU5 C;  3AE2 D;  2WDV C;  3VRB C;  2H89 C;  5C2T D;  3AE8 C;  2WP9 D;  3AE6 D;  3AEC C;  2H88 C;  1YQ4 C;  3P4R C;  1KFY C;  3AEF C;  3AEG D;  1KFY D;  2ACZ D;  4KX6 C;  3AE4 C;  2WDR D;  2BS4 C;  2B76 C;  3AE7 D;  2FBW C;  3AEA D;  4YSY C;  4YSZ C;  3SFE D;  5C3J D;  3AE1 D;  2WU5 D;  2WDV D;  2BS2 C;  3CIR C;  4YTP C;  3VRB D;  3AE3 C;  2H89 D;  2WDQ C;  2WU2 C; 
#chains in the Genus database with same CATH topology
 3AE3 D;  3P4P C;  3AE8 D;  3AEC D;  2WU2 D;  2H88 D;  1YQ4 D;  2ZFY A;  3AE5 C;  3P4R D;  4YSX C;  3P4Q C;  4DHJ A;  3VRA C;  4YTM C;  3AEF D;  4YTM D;  1L0V C;  4YT0 C;  3VR8 C;  3P4S C;  4KX6 D;  3AE4 D;  1NEK C;  2B76 D;  1NEN C;  1E7P C;  4YSY D;  2FBW D;  4YSZ D;  3ABV C;  2WS3 C;  4FJV A;  1QLB C;  3CIR D;  3AED C;  4YTP D;  3AEB C;  1ZOY C;  2WDQ D;  1YQ3 C;  3AE9 C;  3P4P D;  3SFD C;  1YQ3 D;  3AE5 D;  4YSX D;  1KF6 C;  4YTN C;  3P4Q D;  4DDI A;  3VRA D;  4YXD C;  4YXD D;  1L0V D;  3VON A;  2BS3 C;  4YT0 D;  3VR8 D;  3P4S D;  5C2T C;  2WP9 C;  3AE6 C;  1NEK D;  1NEN D;  4I6L A;  3VR9 C;  4DDG A;  2WQY C;  3ABV D;  3AEG C;  3VR9 D;  2WS3 D;  2ACZ C;  2WQY D;  3AEB D;  3AED D;  1ZOY D;  2WDR C;  3AE9 D;  3AEE C;  1ZP0 C;  3SFD D;  3AEE D;  1ZP0 D;  3AE7 C;  3AEA C;  3SFE C;  1KF6 D;  3AE2 C;  3AE1 C;  4YTN D;  5C3J C;  2WU5 C;  3AE2 D;  2WDV C;  3VRB C;  2H89 C;  5C2T D;  3AE8 C;  2WP9 D;  3AE6 D;  3AEC C;  2H88 C;  1YQ4 C;  3P4R C;  1KFY C;  4LDT A;  3AEF C;  3AEG D;  1KFY D;  2ACZ D;  4DHI B;  4KX6 C;  3AE4 C;  2WDR D;  4DHZ A;  2BS4 C;  2B76 C;  3AE7 D;  2FBW C;  3AEA D;  4YSY C;  4YSZ C;  3SFE D;  5C3J D;  3AE1 D;  2WU5 D;  1TFF A;  2WDV D;  2BS2 C;  3CIR C;  4YTP C;  3VRB D;  3AE3 C;  2H89 D;  2WDQ C;  2WU2 C; 
#chains in the Genus database with same CATH homology
 3AE3 D;  3P4P C;  3AE8 D;  3AEC D;  2WU2 D;  2H88 D;  1YQ4 D;  3AE5 C;  3P4R D;  4YSX C;  3P4Q C;  3VRA C;  4YTM C;  3AEF D;  4YTM D;  1L0V C;  4YT0 C;  3VR8 C;  3P4S C;  4KX6 D;  3AE4 D;  1NEK C;  2B76 D;  1NEN C;  1E7P C;  4YSY D;  2FBW D;  4YSZ D;  3ABV C;  2WS3 C;  1QLB C;  3CIR D;  3AED C;  4YTP D;  3AEB C;  1ZOY C;  2WDQ D;  1YQ3 C;  3AE9 C;  3P4P D;  3SFD C;  1YQ3 D;  3AE5 D;  4YSX D;  1KF6 C;  4YTN C;  3P4Q D;  3VRA D;  4YXD C;  4YXD D;  1L0V D;  2BS3 C;  4YT0 D;  3VR8 D;  3P4S D;  5C2T C;  2WP9 C;  3AE6 C;  1NEK D;  1NEN D;  3VR9 C;  2WQY C;  3ABV D;  3AEG C;  3VR9 D;  2WS3 D;  2ACZ C;  2WQY D;  3AEB D;  3AED D;  1ZOY D;  2WDR C;  3AE9 D;  3AEE C;  1ZP0 C;  3SFD D;  3AEE D;  1ZP0 D;  3AE7 C;  3AEA C;  3SFE C;  1KF6 D;  3AE2 C;  3AE1 C;  4YTN D;  5C3J C;  2WU5 C;  3AE2 D;  2WDV C;  3VRB C;  2H89 C;  5C2T D;  3AE8 C;  2WP9 D;  3AE6 D;  3AEC C;  2H88 C;  1YQ4 C;  3P4R C;  1KFY C;  3AEF C;  3AEG D;  1KFY D;  2ACZ D;  4KX6 C;  3AE4 C;  2WDR D;  2BS4 C;  2B76 C;  3AE7 D;  2FBW C;  3AEA D;  4YSY C;  4YSZ C;  3SFE D;  5C3J D;  3AE1 D;  2WU5 D;  2WDV D;  2BS2 C;  3CIR C;  4YTP C;  3VRB D;  3AE3 C;  2H89 D;  2WDQ C;  2WU2 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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