2WS3C

Crystal structure of the e. coli succinate:quinone oxidoreductase (sqr) sdhd tyr83phe mutant
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
121
structure length
121
Chain Sequence
QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Succinate Dehydrogenase Activity
rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
total genus 46
structure length 121
sequence length 121
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2009-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2ws3C00
1ZOYD 4KX6C 2WU5D 1L0VC 3VRAC 2H88D 4YSXD 1YQ4C 3AE5C 2WDVD 2WU2D 3ABVC 4YXDD 3AE8C 3VRBC 3P4SD 4YT0C 5C3JD 5C2TC 1NEND 1YQ3C 3P4RD 2H89D 2WDQC 3P4PD 3P4QD 3AE7C 3VR8D 3VR9D 2B76C 4YTMC 2BS2C 3AE4D 2BS3C 3AECD 3AEED 3AEDD 2WDRC 4YTPD 3AEFD 3CIRC 3AE2C 1ZP0D 3AEBD 3AEAC 4YTND 3SFDC 1NEKD 3AE1C 2WS3D 1L0VD 2WQYD 2WU5C 3AEGD 3VRAD 2H88C 4YSZD 4YSXC 3AE5D 2WU2C 2WP9C 3SFED 3VRBD 4YXDC 4YT0D 5C2TD 5C3JC 1KF6C 1NENC 1KFYD 2FBWD 2H89C 3P4PC 3AE7D 3AE6C 3P4QC 3AE9D 2B76D 4YSYD 3AE4C 3AE3D 2ACZD 3AECC 4KX6D 1ZOYC 3AEFC 1YQ4D 3ABVD 2WDVC 3AE8D 3AEAD 1ZP0C 3AEBC 3SFDD 3P4SC 4YTNC 2WS3C 2ACZC 1YQ3D 2WQYC 3AEGC 4YSZC 3P4RC 2WDQD 1QLBC 2WP9D 1E7PC 3VR8C 3SFEC 4YTMD 3VR9C 1KF6D 1KFYC 2BS4C 2FBWC 2WDRD 3AEEC 3AEDC 4YTPC 3AE6D 3CIRD 3AE9C 3AE2D 4YSYC 3AE3C 3AE1D 1NEKC
chains in the Genus database with same CATH superfamily
1ZOYD 4KX6C 2WU5D 1L0VC 3VRAC 2H88D 4YSXD 1YQ4C 3AE5C 2WDVD 2WU2D 3ABVC 4YXDD 3AE8C 3VRBC 3P4SD 4YT0C 5C3JD 5C2TC 1NEND 1YQ3C 3P4RD 2H89D 2WDQC 3P4PD 3P4QD 3AE7C 3VR8D 3VR9D 2B76C 4YTMC 2BS2C 3AE4D 2BS3C 3AECD 3AEED 3AEDD 2WDRC 4YTPD 3AEFD 3CIRC 3AE2C 4FJVA 4DHIB 1ZP0D 3AEBD 3AEAC 4YTND 3SFDC 4DDGA 1NEKD 3AE1C 2WS3D 1L0VD 2WQYD 2WU5C 3AEGD 3VRAD 2H88C 4YSZD 4YSXC 3AE5D 2WU2C 2WP9C 3SFED 3VRBD 4YXDC 4YT0D 5C2TD 5C3JC 1KF6C 1NENC 1KFYD 2FBWD 2H89C 3P4PC 3AE7D 3AE6C 3P4QC 3AE9D 2B76D 3VONA 4YSYD 3AE4C 3AE3D 2ACZD 3AECC 4DHJA 4KX6D 1ZOYC 3AEFC 1TFFA 1YQ4D 3ABVD 2ZFYA 2WDVC 3AE8D 3AEAD 1ZP0C 3AEBC 3SFDD 3P4SC 4YTNC 4DDIA 2WS3C 2ACZC 1YQ3D 2WQYC 3AEGC 4YSZC 3P4RC 2WDQD 1QLBC 2WP9D 1E7PC 3VR8C 3SFEC 4YTMD 3VR9C 1KF6D 1KFYC 2BS4C 2FBWC 2WDRD 3AEEC 3AEDC 4YTPC 3AE6D 3CIRD 3AE9C 3AE2D 4I6LA 4YSYC 3AE3C 4LDTA 4DHZA 3AE1D 1NEKC
chains in the Genus database with same CATH topology
1ZOYD 4KX6C 2WU5D 1L0VC 3VRAC 2H88D 4YSXD 1YQ4C 3AE5C 2WDVD 2WU2D 3ABVC 4YXDD 3AE8C 3VRBC 3P4SD 4YT0C 5C3JD 5C2TC 1NEND 1YQ3C 3P4RD 2H89D 2WDQC 3P4PD 3P4QD 3AE7C 3VR8D 3VR9D 2B76C 4YTMC 2BS2C 3AE4D 2BS3C 3AECD 3AEED 3AEDD 2WDRC 4YTPD 3AEFD 3CIRC 3AE2C 1ZP0D 3AEBD 3AEAC 4YTND 3SFDC 1NEKD 3AE1C 2WS3D 1L0VD 2WQYD 2WU5C 3AEGD 3VRAD 2H88C 4YSZD 4YSXC 3AE5D 2WU2C 2WP9C 3SFED 3VRBD 4YXDC 4YT0D 5C2TD 5C3JC 1KF6C 1NENC 1KFYD 2FBWD 2H89C 3P4PC 3AE7D 3AE6C 3P4QC 3AE9D 2B76D 4YSYD 3AE4C 3AE3D 2ACZD 3AECC 4KX6D 1ZOYC 3AEFC 1YQ4D 3ABVD 2WDVC 3AE8D 3AEAD 1ZP0C 3AEBC 3SFDD 3P4SC 4YTNC 2WS3C 2ACZC 1YQ3D 2WQYC 3AEGC 4YSZC 3P4RC 2WDQD 1QLBC 2WP9D 1E7PC 3VR8C 3SFEC 4YTMD 3VR9C 1KF6D 1KFYC 2BS4C 2FBWC 2WDRD 3AEEC 3AEDC 4YTPC 3AE6D 3CIRD 3AE9C 3AE2D 4YSYC 3AE3C 3AE1D 1NEKC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZOY D;  4KX6 C;  2WU5 D;  1L0V C;  3VRA C;  2H88 D;  4YSX D;  1YQ4 C;  3AE5 C;  2WDV D;  2WU2 D;  3ABV C;  4YXD D;  3AE8 C;  3VRB C;  3P4S D;  4YT0 C;  5C3J D;  5C2T C;  1NEN D;  1YQ3 C;  3P4R D;  2H89 D;  2WDQ C;  3P4P D;  3P4Q D;  3AE7 C;  3VR8 D;  3VR9 D;  2B76 C;  4YTM C;  2BS2 C;  3AE4 D;  2BS3 C;  3AEC D;  3AEE D;  3AED D;  2WDR C;  4YTP D;  3AEF D;  3CIR C;  3AE2 C;  1ZP0 D;  3AEB D;  3AEA C;  4YTN D;  3SFD C;  1NEK D;  3AE1 C;  2WS3 D;  1L0V D;  2WQY D;  2WU5 C;  3AEG D;  3VRA D;  2H88 C;  4YSZ D;  4YSX C;  3AE5 D;  2WU2 C;  2WP9 C;  3SFE D;  3VRB D;  4YXD C;  4YT0 D;  5C2T D;  5C3J C;  1KF6 C;  1NEN C;  1KFY D;  2FBW D;  2H89 C;  3P4P C;  3AE7 D;  3AE6 C;  3P4Q C;  3AE9 D;  2B76 D;  4YSY D;  3AE4 C;  3AE3 D;  2ACZ D;  3AEC C;  4KX6 D;  1ZOY C;  3AEF C;  1YQ4 D;  3ABV D;  2WDV C;  3AE8 D;  3AEA D;  1ZP0 C;  3AEB C;  3SFD D;  3P4S C;  4YTN C;  2WS3 C;  2ACZ C;  1YQ3 D;  2WQY C;  3AEG C;  4YSZ C;  3P4R C;  2WDQ D;  1QLB C;  2WP9 D;  1E7P C;  3VR8 C;  3SFE C;  4YTM D;  3VR9 C;  1KF6 D;  1KFY C;  2BS4 C;  2FBW C;  2WDR D;  3AEE C;  3AED C;  4YTP C;  3AE6 D;  3CIR D;  3AE9 C;  3AE2 D;  4YSY C;  3AE3 C;  3AE1 D;  1NEK C; 
#chains in the Genus database with same CATH topology
 1ZOY D;  4KX6 C;  2WU5 D;  1L0V C;  3VRA C;  2H88 D;  4YSX D;  1YQ4 C;  3AE5 C;  2WDV D;  2WU2 D;  3ABV C;  4YXD D;  3AE8 C;  3VRB C;  3P4S D;  4YT0 C;  5C3J D;  5C2T C;  1NEN D;  1YQ3 C;  3P4R D;  2H89 D;  2WDQ C;  3P4P D;  3P4Q D;  3AE7 C;  3VR8 D;  3VR9 D;  2B76 C;  4YTM C;  2BS2 C;  3AE4 D;  2BS3 C;  3AEC D;  3AEE D;  3AED D;  2WDR C;  4YTP D;  3AEF D;  3CIR C;  3AE2 C;  4FJV A;  4DHI B;  1ZP0 D;  3AEB D;  3AEA C;  4YTN D;  3SFD C;  4DDG A;  1NEK D;  3AE1 C;  2WS3 D;  1L0V D;  2WQY D;  2WU5 C;  3AEG D;  3VRA D;  2H88 C;  4YSZ D;  4YSX C;  3AE5 D;  2WU2 C;  2WP9 C;  3SFE D;  3VRB D;  4YXD C;  4YT0 D;  5C2T D;  5C3J C;  1KF6 C;  1NEN C;  1KFY D;  2FBW D;  2H89 C;  3P4P C;  3AE7 D;  3AE6 C;  3P4Q C;  3AE9 D;  2B76 D;  3VON A;  4YSY D;  3AE4 C;  3AE3 D;  2ACZ D;  3AEC C;  4DHJ A;  4KX6 D;  1ZOY C;  3AEF C;  1TFF A;  1YQ4 D;  3ABV D;  2ZFY A;  2WDV C;  3AE8 D;  3AEA D;  1ZP0 C;  3AEB C;  3SFD D;  3P4S C;  4YTN C;  4DDI A;  2WS3 C;  2ACZ C;  1YQ3 D;  2WQY C;  3AEG C;  4YSZ C;  3P4R C;  2WDQ D;  1QLB C;  2WP9 D;  1E7P C;  3VR8 C;  3SFE C;  4YTM D;  3VR9 C;  1KF6 D;  1KFY C;  2BS4 C;  2FBW C;  2WDR D;  3AEE C;  3AED C;  4YTP C;  3AE6 D;  3CIR D;  3AE9 C;  3AE2 D;  4I6L A;  4YSY C;  3AE3 C;  4LDT A;  4DHZ A;  3AE1 D;  1NEK C; 
#chains in the Genus database with same CATH homology
 1ZOY D;  4KX6 C;  2WU5 D;  1L0V C;  3VRA C;  2H88 D;  4YSX D;  1YQ4 C;  3AE5 C;  2WDV D;  2WU2 D;  3ABV C;  4YXD D;  3AE8 C;  3VRB C;  3P4S D;  4YT0 C;  5C3J D;  5C2T C;  1NEN D;  1YQ3 C;  3P4R D;  2H89 D;  2WDQ C;  3P4P D;  3P4Q D;  3AE7 C;  3VR8 D;  3VR9 D;  2B76 C;  4YTM C;  2BS2 C;  3AE4 D;  2BS3 C;  3AEC D;  3AEE D;  3AED D;  2WDR C;  4YTP D;  3AEF D;  3CIR C;  3AE2 C;  1ZP0 D;  3AEB D;  3AEA C;  4YTN D;  3SFD C;  1NEK D;  3AE1 C;  2WS3 D;  1L0V D;  2WQY D;  2WU5 C;  3AEG D;  3VRA D;  2H88 C;  4YSZ D;  4YSX C;  3AE5 D;  2WU2 C;  2WP9 C;  3SFE D;  3VRB D;  4YXD C;  4YT0 D;  5C2T D;  5C3J C;  1KF6 C;  1NEN C;  1KFY D;  2FBW D;  2H89 C;  3P4P C;  3AE7 D;  3AE6 C;  3P4Q C;  3AE9 D;  2B76 D;  4YSY D;  3AE4 C;  3AE3 D;  2ACZ D;  3AEC C;  4KX6 D;  1ZOY C;  3AEF C;  1YQ4 D;  3ABV D;  2WDV C;  3AE8 D;  3AEA D;  1ZP0 C;  3AEB C;  3SFD D;  3P4S C;  4YTN C;  2WS3 C;  2ACZ C;  1YQ3 D;  2WQY C;  3AEG C;  4YSZ C;  3P4R C;  2WDQ D;  1QLB C;  2WP9 D;  1E7P C;  3VR8 C;  3SFE C;  4YTM D;  3VR9 C;  1KF6 D;  1KFY C;  2BS4 C;  2FBW C;  2WDR D;  3AEE C;  3AED C;  4YTP C;  3AE6 D;  3CIR D;  3AE9 C;  3AE2 D;  4YSY C;  3AE3 C;  3AE1 D;  1NEK C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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