2WU2 | Genus

Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	122
structure length	122
Chain Sequence	QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYMVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfdd271bbfcffe33e70a67e/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5cfdd271bbfcffe33e70a67e/pdb.gz): 1460 ms

reading 122 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

122 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:121});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Crystal Structure of the E. Coli Succinate:Quinone Oxidoreductase (Sqr) Sdhc His84met Mutant rcsb
molecule keywords	SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
total genus	52
structure length	122
sequence length	122
chains with identical sequence	G, K
ec nomenclature
pdb deposition date	2009-09-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01127	Sdh_cyt	Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	2wu2C00

3AEBD 3AE8D 2WU5D 5C3JC 4YT0C 3SFDD 3AEFD 3AEED 1YQ4C 3P4PD 1NENC 1QLBC 3VR9C 3AE1D 3AE2C 2WQYC 4YTPC 3AE3C 4YTMC 4YXDD 5C2TD 4KX6D 3P4RD 2WS3D 3AECC 2BS2C 3AEDC 1NEKD 4YSYC 3AE5C 2WDQD 3AE7C 4YTNC 1ZOYD 4YSZD 1L0VC 2H88C 1ZP0D 3VRBC 3AE4C 3SFED 3AEBC 3AE8C 1YQ3D 2WU5C 3VRAD 3SFDC 2WP9C 3AEFC 3AEEC 3CIRD 3ABVD 3AEAC 5C3JD 4YT0D 3P4PC 3AE9D 3AE1C 2WDRD 4YSXD 2FBWD 3AE6D 1NEND 4YXDC 5C2TC 4KX6C 2H89D 3P4RC 2WS3C 3P4QD 2ACZD 1KF6D 2WDQC 3AEGD 2B76D 2WU2D 4YTMD 1ZOYC 4YSZC 3P4SD 3VR8D 1KFYD 1ZP0C 2WDVD 1YQ3C 3AE5D 3VRAC 2H88D 3CIRC 3ABVC 3AE4D 3VRBD 3AE9C 1YQ4D 2WP9D 3VR9D 2WDRC 4YSXC 2FBWC 3AE2D 2BS3C 2WQYD 3AEAD 4YTPD 1E7PC 1NEKC 3AE6C 3AE3D 2H89C 2BS4C 3P4QC 3AECD 2ACZC 3SFEC 1KF6C 2B76C 2WU2C 3AEDD 3AEGC 4YSYD 3AE7D 3P4SC 3VR8C 4YTND 1L0VD 1KFYC 2WDVC
chains in the Genus database with same CATH superfamily

3AEBD 3AE8D 2WU5D 5C3JC 4YT0C 3SFDD 3AEFD 3AEED 1YQ4C 3P4PD 1NENC 1QLBC 3VR9C 3AE1D 3AE2C 2WQYC 4I6LA 4YTPC 4DDGA 3AE3C 4YTMC 4YXDD 5C2TD 4DDIA 4KX6D 3P4RD 2WS3D 3AECC 2BS2C 3AEDC 1NEKD 4YSYC 3AE5C 2WDQD 3AE7C 4YTNC 1ZOYD 4YSZD 1L0VC 2H88C 4DHZA 1ZP0D 3VRBC 3AE4C 3SFED 3AEBC 3AE8C 1YQ3D 2WU5C 3VRAD 3SFDC 2WP9C 3AEFC 3AEEC 3CIRD 3ABVD 3AEAC 5C3JD 4YT0D 3P4PC 3AE9D 3AE1C 2WDRD 4FJVA 4YSXD 2FBWD 4DHIB 3AE6D 1NEND 4YXDC 5C2TC 4KX6C 2H89D 3P4RC 2WS3C 3P4QD 2ACZD 1KF6D 2WDQC 3AEGD 2B76D 2WU2D 4YTMD 1ZOYC 4YSZC 3VONA 3P4SD 3VR8D 1KFYD 1ZP0C 2WDVD 1YQ3C 3AE5D 3VRAC 4DHJA 2H88D 3CIRC 3ABVC 3AE4D 3VRBD 3AE9C 1YQ4D 2WP9D 3VR9D 2WDRC 4YSXC 4LDTA 2FBWC 3AE2D 2BS3C 2WQYD 3AEAD 4YTPD 1E7PC 1NEKC 3AE6C 3AE3D 2H89C 2BS4C 3P4QC 2ZFYA 3AECD 2ACZC 3SFEC 1KF6C 2B76C 2WU2C 3AEDD 3AEGC 4YSYD 3AE7D 3P4SC 3VR8C 4YTND 1L0VD 1KFYC 2WDVC 1TFFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AEB D;  3AE8 D;  2WU5 D;  5C3J C;  4YT0 C;  3SFD D;  3AEF D;  3AEE D;  1YQ4 C;  3P4P D;  1NEN C;  1QLB C;  3VR9 C;  3AE1 D;  3AE2 C;  2WQY C;  4YTP C;  3AE3 C;  4YTM C;  4YXD D;  5C2T D;  4KX6 D;  3P4R D;  2WS3 D;  3AEC C;  2BS2 C;  3AED C;  1NEK D;  4YSY C;  3AE5 C;  2WDQ D;  3AE7 C;  4YTN C;  1ZOY D;  4YSZ D;  1L0V C;  2H88 C;  1ZP0 D;  3VRB C;  3AE4 C;  3SFE D;  3AEB C;  3AE8 C;  1YQ3 D;  2WU5 C;  3VRA D;  3SFD C;  2WP9 C;  3AEF C;  3AEE C;  3CIR D;  3ABV D;  3AEA C;  5C3J D;  4YT0 D;  3P4P C;  3AE9 D;  3AE1 C;  2WDR D;  4YSX D;  2FBW D;  3AE6 D;  1NEN D;  4YXD C;  5C2T C;  4KX6 C;  2H89 D;  3P4R C;  2WS3 C;  3P4Q D;  2ACZ D;  1KF6 D;  2WDQ C;  3AEG D;  2B76 D;  2WU2 D;  4YTM D;  1ZOY C;  4YSZ C;  3P4S D;  3VR8 D;  1KFY D;  1ZP0 C;  2WDV D;  1YQ3 C;  3AE5 D;  3VRA C;  2H88 D;  3CIR C;  3ABV C;  3AE4 D;  3VRB D;  3AE9 C;  1YQ4 D;  2WP9 D;  3VR9 D;  2WDR C;  4YSX C;  2FBW C;  3AE2 D;  2BS3 C;  2WQY D;  3AEA D;  4YTP D;  1E7P C;  1NEK C;  3AE6 C;  3AE3 D;  2H89 C;  2BS4 C;  3P4Q C;  3AEC D;  2ACZ C;  3SFE C;  1KF6 C;  2B76 C;  2WU2 C;  3AED D;  3AEG C;  4YSY D;  3AE7 D;  3P4S C;  3VR8 C;  4YTN D;  1L0V D;  1KFY C;  2WDV C; 
#chains in the Genus database with same CATH topology
 3AEB D;  3AE8 D;  2WU5 D;  5C3J C;  4YT0 C;  3SFD D;  3AEF D;  3AEE D;  1YQ4 C;  3P4P D;  1NEN C;  1QLB C;  3VR9 C;  3AE1 D;  3AE2 C;  2WQY C;  4I6L A;  4YTP C;  4DDG A;  3AE3 C;  4YTM C;  4YXD D;  5C2T D;  4DDI A;  4KX6 D;  3P4R D;  2WS3 D;  3AEC C;  2BS2 C;  3AED C;  1NEK D;  4YSY C;  3AE5 C;  2WDQ D;  3AE7 C;  4YTN C;  1ZOY D;  4YSZ D;  1L0V C;  2H88 C;  4DHZ A;  1ZP0 D;  3VRB C;  3AE4 C;  3SFE D;  3AEB C;  3AE8 C;  1YQ3 D;  2WU5 C;  3VRA D;  3SFD C;  2WP9 C;  3AEF C;  3AEE C;  3CIR D;  3ABV D;  3AEA C;  5C3J D;  4YT0 D;  3P4P C;  3AE9 D;  3AE1 C;  2WDR D;  4FJV A;  4YSX D;  2FBW D;  4DHI B;  3AE6 D;  1NEN D;  4YXD C;  5C2T C;  4KX6 C;  2H89 D;  3P4R C;  2WS3 C;  3P4Q D;  2ACZ D;  1KF6 D;  2WDQ C;  3AEG D;  2B76 D;  2WU2 D;  4YTM D;  1ZOY C;  4YSZ C;  3VON A;  3P4S D;  3VR8 D;  1KFY D;  1ZP0 C;  2WDV D;  1YQ3 C;  3AE5 D;  3VRA C;  4DHJ A;  2H88 D;  3CIR C;  3ABV C;  3AE4 D;  3VRB D;  3AE9 C;  1YQ4 D;  2WP9 D;  3VR9 D;  2WDR C;  4YSX C;  4LDT A;  2FBW C;  3AE2 D;  2BS3 C;  2WQY D;  3AEA D;  4YTP D;  1E7P C;  1NEK C;  3AE6 C;  3AE3 D;  2H89 C;  2BS4 C;  3P4Q C;  2ZFY A;  3AEC D;  2ACZ C;  3SFE C;  1KF6 C;  2B76 C;  2WU2 C;  3AED D;  3AEG C;  4YSY D;  3AE7 D;  3P4S C;  3VR8 C;  4YTN D;  1L0V D;  1KFY C;  2WDV C;  1TFF A; 
#chains in the Genus database with same CATH homology
 3AEB D;  3AE8 D;  2WU5 D;  5C3J C;  4YT0 C;  3SFD D;  3AEF D;  3AEE D;  1YQ4 C;  3P4P D;  1NEN C;  1QLB C;  3VR9 C;  3AE1 D;  3AE2 C;  2WQY C;  4YTP C;  3AE3 C;  4YTM C;  4YXD D;  5C2T D;  4KX6 D;  3P4R D;  2WS3 D;  3AEC C;  2BS2 C;  3AED C;  1NEK D;  4YSY C;  3AE5 C;  2WDQ D;  3AE7 C;  4YTN C;  1ZOY D;  4YSZ D;  1L0V C;  2H88 C;  1ZP0 D;  3VRB C;  3AE4 C;  3SFE D;  3AEB C;  3AE8 C;  1YQ3 D;  2WU5 C;  3VRA D;  3SFD C;  2WP9 C;  3AEF C;  3AEE C;  3CIR D;  3ABV D;  3AEA C;  5C3J D;  4YT0 D;  3P4P C;  3AE9 D;  3AE1 C;  2WDR D;  4YSX D;  2FBW D;  3AE6 D;  1NEN D;  4YXD C;  5C2T C;  4KX6 C;  2H89 D;  3P4R C;  2WS3 C;  3P4Q D;  2ACZ D;  1KF6 D;  2WDQ C;  3AEG D;  2B76 D;  2WU2 D;  4YTM D;  1ZOY C;  4YSZ C;  3P4S D;  3VR8 D;  1KFY D;  1ZP0 C;  2WDV D;  1YQ3 C;  3AE5 D;  3VRA C;  2H88 D;  3CIR C;  3ABV C;  3AE4 D;  3VRB D;  3AE9 C;  1YQ4 D;  2WP9 D;  3VR9 D;  2WDR C;  4YSX C;  2FBW C;  3AE2 D;  2BS3 C;  2WQY D;  3AEA D;  4YTP D;  1E7P C;  1NEK C;  3AE6 C;  3AE3 D;  2H89 C;  2BS4 C;  3P4Q C;  3AEC D;  2ACZ C;  3SFE C;  1KF6 C;  2B76 C;  2WU2 C;  3AED D;  3AEG C;  4YSY D;  3AE7 D;  3P4S C;  3VR8 C;  4YTN D;  1L0V D;  1KFY C;  2WDV C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2WU2C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations