3AE3 | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	102
structure length	102
Chain Sequence	SSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__563395842141152__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__563395842141152__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/3AE3/D/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__563395842141152__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"563395842141152","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/3AE3/D/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__563395842141152__ ready

script 1 started

platformSpeed = 8

Viewer cachePut cache://localLOAD_/file/5cfe337e50f404ea5adade76/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5cfe337e50f404ea5adade76/pdb.gz

FileManager.getAtomSetCollectionFromFile(/file/5cfe337e50f404ea5adade76/pdb.gz)

loadScript /static/js/j2s/core/corezip.z.js

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfe337e50f404ea5adade76/pdb.gz): 1210 ms

reading 102 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

102 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 16 ms

Adding embedded #jmolscript: select ({0:101});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase/oxidoreductase inhibitor
publication title	Crystal structure of porcine heart mitochondrial complex II bound with 2-Nitro-N-phenyl-benzamide rcsb
molecule keywords	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, m
total genus	39
structure length	102
sequence length	102
ec nomenclature
pdb deposition date	2010-02-04

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	3ae3D00

3AE6C 2WDQD 3AECC 2WU5C 2WS3D 4YT0D 3VRBD 5C2TC 3CIRC 3AEAC 5C3JD 1NEND 2H89C 3AE8D 3AEGD 2WU2C 3AEFD 3P4PC 3AE7C 3AEBD 1NEKD 3SFDC 4YTND 3P4RC 3AE5C 4YSYC 3AE2C 2WDVD 3ABVD 2BS4C 4YSZC 1KFYD 1YQ4D 1ZOYC 4YXDC 2B76C 3AE1C 1KF6D 4KX6C 3AEDC 3AEEC 3VR9C 1L0VC 2WQYC 2FBWC 3VR8C 2WP9C 2WDRD 3VRAC 1YQ3C 3AECD 2ACZD 2WU5D 3SFED 2WDQC 5C2TD 3AEAD 3AE9C 3AE3C 1E7PC 2H89D 2WS3C 4YT0C 4YSXC 2WU2D 3AE7D 1NENC 3P4QD 3AE8C 2H88C 3P4SC 3AE5D 1NEKC 3AE2D 4YSYD 1ZP0C 2BS2C 4YTMC 4YSZD 1ZOYD 4YXDD 3AE1D 3AE6D 4YTPC 1KFYC 1YQ4C 3AEDD 1QLBC 3AEED 3VR9D 1L0VD 3AE4C 3VR8D 2WP9D 3CIRD 2BS3C 3VRAD 3VRBC 5C3JC 3P4PD 3AEGC 2ACZC 3SFDD 3AE9D 3P4RD 3AE3D 3AEFC 3SFEC 3AEBC 4YSXD 4YTNC 2H88D 3P4SD 2WDVC 3ABVC 2B76D 4KX6D 3P4QC 1ZP0D 4YTMD 2WQYD 1KF6C 2FBWD 1YQ3D 4YTPD 2WDRC 3AE4D
chains in the Genus database with same CATH superfamily

3AE6C 2WDQD 3AECC 2WU5C 2WS3D 4YT0D 4DDGA 3VRBD 5C2TC 3CIRC 3AEAC 5C3JD 1NEND 2H89C 3AE8D 4FJVA 3AEGD 2WU2C 3AEFD 3P4PC 3AE7C 3AEBD 1NEKD 3SFDC 4YTND 3P4RC 3AE5C 4YSYC 3AE2C 2WDVD 3ABVD 2BS4C 4YSZC 1KFYD 2ZFYA 1YQ4D 1ZOYC 4YXDC 4DHJA 2B76C 3AE1C 1KF6D 4KX6C 3AEDC 3AEEC 3VR9C 4DHIB 3VONA 1L0VC 2WQYC 2FBWC 3VR8C 2WP9C 2WDRD 3VRAC 1YQ3C 1TFFA 3AECD 4LDTA 2ACZD 2WU5D 3SFED 2WDQC 5C2TD 4DHZA 3AEAD 3AE9C 3AE3C 1E7PC 2H89D 2WS3C 4YT0C 4YSXC 2WU2D 3AE7D 1NENC 3P4QD 3AE8C 2H88C 3P4SC 3AE5D 1NEKC 3AE2D 4YSYD 1ZP0C 2BS2C 4YTMC 4YSZD 1ZOYD 4YXDD 3AE1D 3AE6D 4YTPC 1KFYC 1YQ4C 3AEDD 1QLBC 3AEED 3VR9D 1L0VD 3AE4C 3VR8D 2WP9D 3CIRD 2BS3C 3VRAD 4I6LA 3VRBC 5C3JC 3P4PD 3AEGC 2ACZC 3SFDD 3AE9D 3P4RD 3AE3D 3AEFC 3SFEC 3AEBC 4YSXD 4YTNC 2H88D 3P4SD 2WDVC 4DDIA 3ABVC 2B76D 4KX6D 3P4QC 1ZP0D 4YTMD 2WQYD 1KF6C 2FBWD 1YQ3D 4YTPD 2WDRC 3AE4D
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AE6 C;  2WDQ D;  3AEC C;  2WU5 C;  2WS3 D;  4YT0 D;  3VRB D;  5C2T C;  3CIR C;  3AEA C;  5C3J D;  1NEN D;  2H89 C;  3AE8 D;  3AEG D;  2WU2 C;  3AEF D;  3P4P C;  3AE7 C;  3AEB D;  1NEK D;  3SFD C;  4YTN D;  3P4R C;  3AE5 C;  4YSY C;  3AE2 C;  2WDV D;  3ABV D;  2BS4 C;  4YSZ C;  1KFY D;  1YQ4 D;  1ZOY C;  4YXD C;  2B76 C;  3AE1 C;  1KF6 D;  4KX6 C;  3AED C;  3AEE C;  3VR9 C;  1L0V C;  2WQY C;  2FBW C;  3VR8 C;  2WP9 C;  2WDR D;  3VRA C;  1YQ3 C;  3AEC D;  2ACZ D;  2WU5 D;  3SFE D;  2WDQ C;  5C2T D;  3AEA D;  3AE9 C;  3AE3 C;  1E7P C;  2H89 D;  2WS3 C;  4YT0 C;  4YSX C;  2WU2 D;  3AE7 D;  1NEN C;  3P4Q D;  3AE8 C;  2H88 C;  3P4S C;  3AE5 D;  1NEK C;  3AE2 D;  4YSY D;  1ZP0 C;  2BS2 C;  4YTM C;  4YSZ D;  1ZOY D;  4YXD D;  3AE1 D;  3AE6 D;  4YTP C;  1KFY C;  1YQ4 C;  3AED D;  1QLB C;  3AEE D;  3VR9 D;  1L0V D;  3AE4 C;  3VR8 D;  2WP9 D;  3CIR D;  2BS3 C;  3VRA D;  3VRB C;  5C3J C;  3P4P D;  3AEG C;  2ACZ C;  3SFD D;  3AE9 D;  3P4R D;  3AE3 D;  3AEF C;  3SFE C;  3AEB C;  4YSX D;  4YTN C;  2H88 D;  3P4S D;  2WDV C;  3ABV C;  2B76 D;  4KX6 D;  3P4Q C;  1ZP0 D;  4YTM D;  2WQY D;  1KF6 C;  2FBW D;  1YQ3 D;  4YTP D;  2WDR C;  3AE4 D; 
#chains in the Genus database with same CATH topology
 3AE6 C;  2WDQ D;  3AEC C;  2WU5 C;  2WS3 D;  4YT0 D;  4DDG A;  3VRB D;  5C2T C;  3CIR C;  3AEA C;  5C3J D;  1NEN D;  2H89 C;  3AE8 D;  4FJV A;  3AEG D;  2WU2 C;  3AEF D;  3P4P C;  3AE7 C;  3AEB D;  1NEK D;  3SFD C;  4YTN D;  3P4R C;  3AE5 C;  4YSY C;  3AE2 C;  2WDV D;  3ABV D;  2BS4 C;  4YSZ C;  1KFY D;  2ZFY A;  1YQ4 D;  1ZOY C;  4YXD C;  4DHJ A;  2B76 C;  3AE1 C;  1KF6 D;  4KX6 C;  3AED C;  3AEE C;  3VR9 C;  4DHI B;  3VON A;  1L0V C;  2WQY C;  2FBW C;  3VR8 C;  2WP9 C;  2WDR D;  3VRA C;  1YQ3 C;  1TFF A;  3AEC D;  4LDT A;  2ACZ D;  2WU5 D;  3SFE D;  2WDQ C;  5C2T D;  4DHZ A;  3AEA D;  3AE9 C;  3AE3 C;  1E7P C;  2H89 D;  2WS3 C;  4YT0 C;  4YSX C;  2WU2 D;  3AE7 D;  1NEN C;  3P4Q D;  3AE8 C;  2H88 C;  3P4S C;  3AE5 D;  1NEK C;  3AE2 D;  4YSY D;  1ZP0 C;  2BS2 C;  4YTM C;  4YSZ D;  1ZOY D;  4YXD D;  3AE1 D;  3AE6 D;  4YTP C;  1KFY C;  1YQ4 C;  3AED D;  1QLB C;  3AEE D;  3VR9 D;  1L0V D;  3AE4 C;  3VR8 D;  2WP9 D;  3CIR D;  2BS3 C;  3VRA D;  4I6L A;  3VRB C;  5C3J C;  3P4P D;  3AEG C;  2ACZ C;  3SFD D;  3AE9 D;  3P4R D;  3AE3 D;  3AEF C;  3SFE C;  3AEB C;  4YSX D;  4YTN C;  2H88 D;  3P4S D;  2WDV C;  4DDI A;  3ABV C;  2B76 D;  4KX6 D;  3P4Q C;  1ZP0 D;  4YTM D;  2WQY D;  1KF6 C;  2FBW D;  1YQ3 D;  4YTP D;  2WDR C;  3AE4 D; 
#chains in the Genus database with same CATH homology
 3AE6 C;  2WDQ D;  3AEC C;  2WU5 C;  2WS3 D;  4YT0 D;  3VRB D;  5C2T C;  3CIR C;  3AEA C;  5C3J D;  1NEN D;  2H89 C;  3AE8 D;  3AEG D;  2WU2 C;  3AEF D;  3P4P C;  3AE7 C;  3AEB D;  1NEK D;  3SFD C;  4YTN D;  3P4R C;  3AE5 C;  4YSY C;  3AE2 C;  2WDV D;  3ABV D;  2BS4 C;  4YSZ C;  1KFY D;  1YQ4 D;  1ZOY C;  4YXD C;  2B76 C;  3AE1 C;  1KF6 D;  4KX6 C;  3AED C;  3AEE C;  3VR9 C;  1L0V C;  2WQY C;  2FBW C;  3VR8 C;  2WP9 C;  2WDR D;  3VRA C;  1YQ3 C;  3AEC D;  2ACZ D;  2WU5 D;  3SFE D;  2WDQ C;  5C2T D;  3AEA D;  3AE9 C;  3AE3 C;  1E7P C;  2H89 D;  2WS3 C;  4YT0 C;  4YSX C;  2WU2 D;  3AE7 D;  1NEN C;  3P4Q D;  3AE8 C;  2H88 C;  3P4S C;  3AE5 D;  1NEK C;  3AE2 D;  4YSY D;  1ZP0 C;  2BS2 C;  4YTM C;  4YSZ D;  1ZOY D;  4YXD D;  3AE1 D;  3AE6 D;  4YTP C;  1KFY C;  1YQ4 C;  3AED D;  1QLB C;  3AEE D;  3VR9 D;  1L0V D;  3AE4 C;  3VR8 D;  2WP9 D;  3CIR D;  2BS3 C;  3VRA D;  3VRB C;  5C3J C;  3P4P D;  3AEG C;  2ACZ C;  3SFD D;  3AE9 D;  3P4R D;  3AE3 D;  3AEF C;  3SFE C;  3AEB C;  4YSX D;  4YTN C;  2H88 D;  3P4S D;  2WDV C;  3ABV C;  2B76 D;  4KX6 D;  3P4Q C;  1ZP0 D;  4YTM D;  2WQY D;  1KF6 C;  2FBW D;  1YQ3 D;  4YTP D;  2WDR C;  3AE4 D;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3AE3D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN