3AEF | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	102
structure length	102
Chain Sequence	SSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfe357ce7fddb47e9625abe/pdb.gz): 3735 ms

reading 102 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

102 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
publication title	Crystal structure of porcine heart mitochondrial complex II with an empty quinone-binding pocket rcsb
molecule keywords	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, m
total genus	39
structure length	102
sequence length	102
ec nomenclature
pdb deposition date	2010-02-04

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	3aefD00

2H88D 2BS2C 4YT0C 3AEGC 4KX6C 2FBWD 1YQ4C 2WP9D 3P4RC 4YXDD 1KF6D 3AE6C 2B76D 2H89C 2WDRD 3VR8D 1NEKC 2WQYC 3AE4C 1L0VC 1ZP0D 3AE3D 4YSYD 3VRAD 5C2TC 3ABVC 3CIRC 3VR9C 4YSXD 1QLBC 3AE2D 1NENC 2ACZD 3AE7C 1KFYC 2H88C 3VRBC 2WU5D 1ZOYD 3SFED 2FBWC 2WP9C 3AECD 3AE9D 1YQ3D 2WS3D 4YXDC 4YTPD 3AEDD 2B76C 2WDRC 3VR8C 3AEAD 3AE8C 4YTMD 2WDVD 3AEFD 3AEBC 3P4PD 5C3JD 3AEGD 2BS4C 2WU2C 4KX6D 4YSXC 2ACZC 4YSZD 2H89D 3P4QD 1NEKD 2WQYD 2WU5C 3SFEC 2WDQD 3AE9C 1KF6C 1YQ3C 2WS3C 3AEED 3SFDD 4YTND 2BS3C 3AEAC 3AE1D 3P4SD 3AE5D 4YTMC 1NEND 1ZP0C 2WDVC 3AEFC 3AE3C 3AE7D 3VRAC 3P4PC 4YSYC 4YT0D 1KFYD 5C3JC 3VRBD 1YQ4D 3P4RD 1E7PC 3AE2C 3AE6D 4YSZC 3P4QC 3AE8D 1ZOYC 3AE4D 3AECC 1L0VD 2WDQC 4YTPC 3AEEC 3AEDC 3AEBD 5C2TD 3SFDC 4YTNC 3ABVD 3CIRD 3VR9D 2WU2D 3AE1C 3P4SC 3AE5C
chains in the Genus database with same CATH superfamily

2H88D 2BS2C 4YT0C 3AEGC 4KX6C 2FBWD 1YQ4C 2WP9D 3P4RC 4YXDD 1KF6D 3AE6C 2B76D 2H89C 2WDRD 3VR8D 1NEKC 1TFFA 2WQYC 4FJVA 4DDIA 3AE4C 1L0VC 1ZP0D 3AE3D 4YSYD 3VRAD 5C2TC 3ABVC 3CIRC 4LDTA 3VR9C 4YSXD 1QLBC 3AE2D 1NENC 2ACZD 4DDGA 3AE7C 1KFYC 2H88C 3VRBC 2WU5D 4I6LA 1ZOYD 3SFED 2FBWC 2WP9C 3AECD 3AE9D 1YQ3D 2WS3D 4YXDC 4YTPD 3AEDD 2B76C 2WDRC 3VR8C 3AEAD 3AE8C 4YTMD 2WDVD 3AEFD 3AEBC 3P4PD 5C3JD 3AEGD 2BS4C 2WU2C 4KX6D 4YSXC 2ACZC 4YSZD 2H89D 3P4QD 1NEKD 2WQYD 2WU5C 3SFEC 2WDQD 3AE9C 1KF6C 1YQ3C 2WS3C 3AEED 4DHIB 3SFDD 4YTND 2BS3C 3AEAC 3AE1D 3P4SD 3AE5D 4YTMC 1NEND 2ZFYA 1ZP0C 2WDVC 3AEFC 3AE3C 3AE7D 3VRAC 3P4PC 4YSYC 4YT0D 1KFYD 3VONA 5C3JC 3VRBD 1YQ4D 3P4RD 1E7PC 3AE2C 3AE6D 4DHZA 4YSZC 3P4QC 3AE8D 1ZOYC 4DHJA 3AE4D 3AECC 1L0VD 2WDQC 4YTPC 3AEEC 3AEDC 3AEBD 5C2TD 3SFDC 4YTNC 3ABVD 3CIRD 3VR9D 2WU2D 3AE1C 3P4SC 3AE5C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2H88 D;  2BS2 C;  4YT0 C;  3AEG C;  4KX6 C;  2FBW D;  1YQ4 C;  2WP9 D;  3P4R C;  4YXD D;  1KF6 D;  3AE6 C;  2B76 D;  2H89 C;  2WDR D;  3VR8 D;  1NEK C;  2WQY C;  3AE4 C;  1L0V C;  1ZP0 D;  3AE3 D;  4YSY D;  3VRA D;  5C2T C;  3ABV C;  3CIR C;  3VR9 C;  4YSX D;  1QLB C;  3AE2 D;  1NEN C;  2ACZ D;  3AE7 C;  1KFY C;  2H88 C;  3VRB C;  2WU5 D;  1ZOY D;  3SFE D;  2FBW C;  2WP9 C;  3AEC D;  3AE9 D;  1YQ3 D;  2WS3 D;  4YXD C;  4YTP D;  3AED D;  2B76 C;  2WDR C;  3VR8 C;  3AEA D;  3AE8 C;  4YTM D;  2WDV D;  3AEF D;  3AEB C;  3P4P D;  5C3J D;  3AEG D;  2BS4 C;  2WU2 C;  4KX6 D;  4YSX C;  2ACZ C;  4YSZ D;  2H89 D;  3P4Q D;  1NEK D;  2WQY D;  2WU5 C;  3SFE C;  2WDQ D;  3AE9 C;  1KF6 C;  1YQ3 C;  2WS3 C;  3AEE D;  3SFD D;  4YTN D;  2BS3 C;  3AEA C;  3AE1 D;  3P4S D;  3AE5 D;  4YTM C;  1NEN D;  1ZP0 C;  2WDV C;  3AEF C;  3AE3 C;  3AE7 D;  3VRA C;  3P4P C;  4YSY C;  4YT0 D;  1KFY D;  5C3J C;  3VRB D;  1YQ4 D;  3P4R D;  1E7P C;  3AE2 C;  3AE6 D;  4YSZ C;  3P4Q C;  3AE8 D;  1ZOY C;  3AE4 D;  3AEC C;  1L0V D;  2WDQ C;  4YTP C;  3AEE C;  3AED C;  3AEB D;  5C2T D;  3SFD C;  4YTN C;  3ABV D;  3CIR D;  3VR9 D;  2WU2 D;  3AE1 C;  3P4S C;  3AE5 C; 
#chains in the Genus database with same CATH topology
 2H88 D;  2BS2 C;  4YT0 C;  3AEG C;  4KX6 C;  2FBW D;  1YQ4 C;  2WP9 D;  3P4R C;  4YXD D;  1KF6 D;  3AE6 C;  2B76 D;  2H89 C;  2WDR D;  3VR8 D;  1NEK C;  1TFF A;  2WQY C;  4FJV A;  4DDI A;  3AE4 C;  1L0V C;  1ZP0 D;  3AE3 D;  4YSY D;  3VRA D;  5C2T C;  3ABV C;  3CIR C;  4LDT A;  3VR9 C;  4YSX D;  1QLB C;  3AE2 D;  1NEN C;  2ACZ D;  4DDG A;  3AE7 C;  1KFY C;  2H88 C;  3VRB C;  2WU5 D;  4I6L A;  1ZOY D;  3SFE D;  2FBW C;  2WP9 C;  3AEC D;  3AE9 D;  1YQ3 D;  2WS3 D;  4YXD C;  4YTP D;  3AED D;  2B76 C;  2WDR C;  3VR8 C;  3AEA D;  3AE8 C;  4YTM D;  2WDV D;  3AEF D;  3AEB C;  3P4P D;  5C3J D;  3AEG D;  2BS4 C;  2WU2 C;  4KX6 D;  4YSX C;  2ACZ C;  4YSZ D;  2H89 D;  3P4Q D;  1NEK D;  2WQY D;  2WU5 C;  3SFE C;  2WDQ D;  3AE9 C;  1KF6 C;  1YQ3 C;  2WS3 C;  3AEE D;  4DHI B;  3SFD D;  4YTN D;  2BS3 C;  3AEA C;  3AE1 D;  3P4S D;  3AE5 D;  4YTM C;  1NEN D;  2ZFY A;  1ZP0 C;  2WDV C;  3AEF C;  3AE3 C;  3AE7 D;  3VRA C;  3P4P C;  4YSY C;  4YT0 D;  1KFY D;  3VON A;  5C3J C;  3VRB D;  1YQ4 D;  3P4R D;  1E7P C;  3AE2 C;  3AE6 D;  4DHZ A;  4YSZ C;  3P4Q C;  3AE8 D;  1ZOY C;  4DHJ A;  3AE4 D;  3AEC C;  1L0V D;  2WDQ C;  4YTP C;  3AEE C;  3AED C;  3AEB D;  5C2T D;  3SFD C;  4YTN C;  3ABV D;  3CIR D;  3VR9 D;  2WU2 D;  3AE1 C;  3P4S C;  3AE5 C; 
#chains in the Genus database with same CATH homology
 2H88 D;  2BS2 C;  4YT0 C;  3AEG C;  4KX6 C;  2FBW D;  1YQ4 C;  2WP9 D;  3P4R C;  4YXD D;  1KF6 D;  3AE6 C;  2B76 D;  2H89 C;  2WDR D;  3VR8 D;  1NEK C;  2WQY C;  3AE4 C;  1L0V C;  1ZP0 D;  3AE3 D;  4YSY D;  3VRA D;  5C2T C;  3ABV C;  3CIR C;  3VR9 C;  4YSX D;  1QLB C;  3AE2 D;  1NEN C;  2ACZ D;  3AE7 C;  1KFY C;  2H88 C;  3VRB C;  2WU5 D;  1ZOY D;  3SFE D;  2FBW C;  2WP9 C;  3AEC D;  3AE9 D;  1YQ3 D;  2WS3 D;  4YXD C;  4YTP D;  3AED D;  2B76 C;  2WDR C;  3VR8 C;  3AEA D;  3AE8 C;  4YTM D;  2WDV D;  3AEF D;  3AEB C;  3P4P D;  5C3J D;  3AEG D;  2BS4 C;  2WU2 C;  4KX6 D;  4YSX C;  2ACZ C;  4YSZ D;  2H89 D;  3P4Q D;  1NEK D;  2WQY D;  2WU5 C;  3SFE C;  2WDQ D;  3AE9 C;  1KF6 C;  1YQ3 C;  2WS3 C;  3AEE D;  3SFD D;  4YTN D;  2BS3 C;  3AEA C;  3AE1 D;  3P4S D;  3AE5 D;  4YTM C;  1NEN D;  1ZP0 C;  2WDV C;  3AEF C;  3AE3 C;  3AE7 D;  3VRA C;  3P4P C;  4YSY C;  4YT0 D;  1KFY D;  5C3J C;  3VRB D;  1YQ4 D;  3P4R D;  1E7P C;  3AE2 C;  3AE6 D;  4YSZ C;  3P4Q C;  3AE8 D;  1ZOY C;  3AE4 D;  3AEC C;  1L0V D;  2WDQ C;  4YTP C;  3AEE C;  3AED C;  3AEB D;  5C2T D;  3SFD C;  4YTN C;  3ABV D;  3CIR D;  3VR9 D;  2WU2 D;  3AE1 C;  3P4S C;  3AE5 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3AEFD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN