3CIRC

E. coli quinol fumarate reductase frda t234a mutation
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
130
structure length
130
Chain Sequence
TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Fumarate reductase flavoprotein subunit
total genus 41
structure length 130
sequence length 130
chains with identical sequence O
ec nomenclature
pdb deposition date 2008-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02300 Fumarate_red_C Fumarate reductase subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3cirC00
3AE3C 2B76D 3P4RD 4YSZD 1NEKC 4YSYD 3AEAC 2H89C 3AE5D 3VRAC 1ZP0C 3AE6C 3AECC 1YQ4D 2H88D 1KFYC 2WDVD 3VRAD 1ZP0D 1YQ3D 3AE8D 3VR9C 4YXDC 3AE1C 4YTMC 3AECD 3P4QC 3AE7C 3AEBD 1KF6D 4YTMD 3AE7D 3AEDD 5C3JD 3P4PC 2BS2C 3SFED 4YTND 4YTPD 3ABVC 2WU5C 3VR8C 2WQYC 2WP9C 5C2TC 3P4PD 3AE4C 3AE3D 4YSXC 3SFDC 3AE2C 2WU2C 1NENC 3AEFC 2FBWC 1NEKD 2WP9D 3AEAD 2H89D 3P4SC 3AE2D 3AE6D 3AE9C 3AEGC 3CIRC 1KFYD 3P4SD 4YT0C 3VR9D 4YXDD 2WS3C 3AE1D 3P4QD 1E7PC 2ACZC 2WDQC 2WDRC 4KX6C 3AEEC 3VRBC 3ABVD 2WU5D 3VR8D 2WQYD 5C2TD 4KX6D 3AE4D 3VRBD 4YSXD 3P4RC 3SFDD 2WU2D 1NEND 3AEFD 2FBWD 4YSZC 4YSYC 3AE5C 3AE9D 3AEGD 3CIRD 1YQ4C 2BS4C 2H88C 2WDVC 4YT0D 2WS3D 1YQ3C 3AE8C 1L0VC 2ACZD 2WDQD 1KF6C 3AEBC 2WDRD 3AEDC 1ZOYC 1L0VD 3AEED 5C3JC 3SFEC 2BS3C 2B76C 4YTNC 4YTPC 1QLBC 1ZOYD
chains in the Genus database with same CATH superfamily
4I6LA 3AE3C 2B76D 3P4RD 4YSZD 1NEKC 4YSYD 3AEAC 2H89C 3AE5D 3VRAC 1ZP0C 3AE6C 3AECC 1YQ4D 2H88D 1KFYC 2WDVD 3VRAD 1ZP0D 1YQ3D 3AE8D 3VR9C 4YXDC 3AE1C 4YTMC 3AECD 3P4QC 3AE7C 3AEBD 1TFFA 1KF6D 4YTMD 3AE7D 3AEDD 5C3JD 3P4PC 2BS2C 3SFED 3VONA 4YTND 4YTPD 3ABVC 2WU5C 3VR8C 2WQYC 2WP9C 5C2TC 3P4PD 3AE4C 3AE3D 4YSXC 3SFDC 3AE2C 2WU2C 1NENC 3AEFC 2FBWC 1NEKD 2WP9D 2ZFYA 3AEAD 2H89D 3P4SC 3AE2D 3AE6D 3AE9C 3AEGC 3CIRC 1KFYD 3P4SD 4YT0C 3VR9D 4YXDD 4LDTA 2WS3C 3AE1D 4DHZA 4DHJA 3P4QD 1E7PC 2ACZC 4DDIA 2WDQC 2WDRC 4KX6C 3AEEC 3VRBC 3ABVD 2WU5D 3VR8D 2WQYD 5C2TD 4KX6D 3AE4D 3VRBD 4YSXD 3P4RC 3SFDD 2WU2D 1NEND 3AEFD 2FBWD 4YSZC 4YSYC 3AE5C 3AE9D 3AEGD 3CIRD 1YQ4C 2BS4C 2H88C 2WDVC 4YT0D 2WS3D 1YQ3C 3AE8C 4FJVA 1L0VC 2ACZD 4DDGA 2WDQD 1KF6C 3AEBC 2WDRD 3AEDC 1ZOYC 1L0VD 3AEED 5C3JC 3SFEC 2BS3C 2B76C 4DHIB 4YTNC 4YTPC 1QLBC 1ZOYD
chains in the Genus database with same CATH topology
3AE3C 2B76D 3P4RD 4YSZD 1NEKC 4YSYD 3AEAC 2H89C 3AE5D 3VRAC 1ZP0C 3AE6C 3AECC 1YQ4D 2H88D 1KFYC 2WDVD 3VRAD 1ZP0D 1YQ3D 3AE8D 3VR9C 4YXDC 3AE1C 4YTMC 3AECD 3P4QC 3AE7C 3AEBD 1KF6D 4YTMD 3AE7D 3AEDD 5C3JD 3P4PC 2BS2C 3SFED 4YTND 4YTPD 3ABVC 2WU5C 3VR8C 2WQYC 2WP9C 5C2TC 3P4PD 3AE4C 3AE3D 4YSXC 3SFDC 3AE2C 2WU2C 1NENC 3AEFC 2FBWC 1NEKD 2WP9D 3AEAD 2H89D 3P4SC 3AE2D 3AE6D 3AE9C 3AEGC 3CIRC 1KFYD 3P4SD 4YT0C 3VR9D 4YXDD 2WS3C 3AE1D 3P4QD 1E7PC 2ACZC 2WDQC 2WDRC 4KX6C 3AEEC 3VRBC 3ABVD 2WU5D 3VR8D 2WQYD 5C2TD 4KX6D 3AE4D 3VRBD 4YSXD 3P4RC 3SFDD 2WU2D 1NEND 3AEFD 2FBWD 4YSZC 4YSYC 3AE5C 3AE9D 3AEGD 3CIRD 1YQ4C 2BS4C 2H88C 2WDVC 4YT0D 2WS3D 1YQ3C 3AE8C 1L0VC 2ACZD 2WDQD 1KF6C 3AEBC 2WDRD 3AEDC 1ZOYC 1L0VD 3AEED 5C3JC 3SFEC 2BS3C 2B76C 4YTNC 4YTPC 1QLBC 1ZOYD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE3 C;  2B76 D;  3P4R D;  4YSZ D;  1NEK C;  4YSY D;  3AEA C;  2H89 C;  3AE5 D;  3VRA C;  1ZP0 C;  3AE6 C;  3AEC C;  1YQ4 D;  2H88 D;  1KFY C;  2WDV D;  3VRA D;  1ZP0 D;  1YQ3 D;  3AE8 D;  3VR9 C;  4YXD C;  3AE1 C;  4YTM C;  3AEC D;  3P4Q C;  3AE7 C;  3AEB D;  1KF6 D;  4YTM D;  3AE7 D;  3AED D;  5C3J D;  3P4P C;  2BS2 C;  3SFE D;  4YTN D;  4YTP D;  3ABV C;  2WU5 C;  3VR8 C;  2WQY C;  2WP9 C;  5C2T C;  3P4P D;  3AE4 C;  3AE3 D;  4YSX C;  3SFD C;  3AE2 C;  2WU2 C;  1NEN C;  3AEF C;  2FBW C;  1NEK D;  2WP9 D;  3AEA D;  2H89 D;  3P4S C;  3AE2 D;  3AE6 D;  3AE9 C;  3AEG C;  3CIR C;  1KFY D;  3P4S D;  4YT0 C;  3VR9 D;  4YXD D;  2WS3 C;  3AE1 D;  3P4Q D;  1E7P C;  2ACZ C;  2WDQ C;  2WDR C;  4KX6 C;  3AEE C;  3VRB C;  3ABV D;  2WU5 D;  3VR8 D;  2WQY D;  5C2T D;  4KX6 D;  3AE4 D;  3VRB D;  4YSX D;  3P4R C;  3SFD D;  2WU2 D;  1NEN D;  3AEF D;  2FBW D;  4YSZ C;  4YSY C;  3AE5 C;  3AE9 D;  3AEG D;  3CIR D;  1YQ4 C;  2BS4 C;  2H88 C;  2WDV C;  4YT0 D;  2WS3 D;  1YQ3 C;  3AE8 C;  1L0V C;  2ACZ D;  2WDQ D;  1KF6 C;  3AEB C;  2WDR D;  3AED C;  1ZOY C;  1L0V D;  3AEE D;  5C3J C;  3SFE C;  2BS3 C;  2B76 C;  4YTN C;  4YTP C;  1QLB C;  1ZOY D; 
#chains in the Genus database with same CATH topology
 4I6L A;  3AE3 C;  2B76 D;  3P4R D;  4YSZ D;  1NEK C;  4YSY D;  3AEA C;  2H89 C;  3AE5 D;  3VRA C;  1ZP0 C;  3AE6 C;  3AEC C;  1YQ4 D;  2H88 D;  1KFY C;  2WDV D;  3VRA D;  1ZP0 D;  1YQ3 D;  3AE8 D;  3VR9 C;  4YXD C;  3AE1 C;  4YTM C;  3AEC D;  3P4Q C;  3AE7 C;  3AEB D;  1TFF A;  1KF6 D;  4YTM D;  3AE7 D;  3AED D;  5C3J D;  3P4P C;  2BS2 C;  3SFE D;  3VON A;  4YTN D;  4YTP D;  3ABV C;  2WU5 C;  3VR8 C;  2WQY C;  2WP9 C;  5C2T C;  3P4P D;  3AE4 C;  3AE3 D;  4YSX C;  3SFD C;  3AE2 C;  2WU2 C;  1NEN C;  3AEF C;  2FBW C;  1NEK D;  2WP9 D;  2ZFY A;  3AEA D;  2H89 D;  3P4S C;  3AE2 D;  3AE6 D;  3AE9 C;  3AEG C;  3CIR C;  1KFY D;  3P4S D;  4YT0 C;  3VR9 D;  4YXD D;  4LDT A;  2WS3 C;  3AE1 D;  4DHZ A;  4DHJ A;  3P4Q D;  1E7P C;  2ACZ C;  4DDI A;  2WDQ C;  2WDR C;  4KX6 C;  3AEE C;  3VRB C;  3ABV D;  2WU5 D;  3VR8 D;  2WQY D;  5C2T D;  4KX6 D;  3AE4 D;  3VRB D;  4YSX D;  3P4R C;  3SFD D;  2WU2 D;  1NEN D;  3AEF D;  2FBW D;  4YSZ C;  4YSY C;  3AE5 C;  3AE9 D;  3AEG D;  3CIR D;  1YQ4 C;  2BS4 C;  2H88 C;  2WDV C;  4YT0 D;  2WS3 D;  1YQ3 C;  3AE8 C;  4FJV A;  1L0V C;  2ACZ D;  4DDG A;  2WDQ D;  1KF6 C;  3AEB C;  2WDR D;  3AED C;  1ZOY C;  1L0V D;  3AEE D;  5C3J C;  3SFE C;  2BS3 C;  2B76 C;  4DHI B;  4YTN C;  4YTP C;  1QLB C;  1ZOY D; 
#chains in the Genus database with same CATH homology
 3AE3 C;  2B76 D;  3P4R D;  4YSZ D;  1NEK C;  4YSY D;  3AEA C;  2H89 C;  3AE5 D;  3VRA C;  1ZP0 C;  3AE6 C;  3AEC C;  1YQ4 D;  2H88 D;  1KFY C;  2WDV D;  3VRA D;  1ZP0 D;  1YQ3 D;  3AE8 D;  3VR9 C;  4YXD C;  3AE1 C;  4YTM C;  3AEC D;  3P4Q C;  3AE7 C;  3AEB D;  1KF6 D;  4YTM D;  3AE7 D;  3AED D;  5C3J D;  3P4P C;  2BS2 C;  3SFE D;  4YTN D;  4YTP D;  3ABV C;  2WU5 C;  3VR8 C;  2WQY C;  2WP9 C;  5C2T C;  3P4P D;  3AE4 C;  3AE3 D;  4YSX C;  3SFD C;  3AE2 C;  2WU2 C;  1NEN C;  3AEF C;  2FBW C;  1NEK D;  2WP9 D;  3AEA D;  2H89 D;  3P4S C;  3AE2 D;  3AE6 D;  3AE9 C;  3AEG C;  3CIR C;  1KFY D;  3P4S D;  4YT0 C;  3VR9 D;  4YXD D;  2WS3 C;  3AE1 D;  3P4Q D;  1E7P C;  2ACZ C;  2WDQ C;  2WDR C;  4KX6 C;  3AEE C;  3VRB C;  3ABV D;  2WU5 D;  3VR8 D;  2WQY D;  5C2T D;  4KX6 D;  3AE4 D;  3VRB D;  4YSX D;  3P4R C;  3SFD D;  2WU2 D;  1NEN D;  3AEF D;  2FBW D;  4YSZ C;  4YSY C;  3AE5 C;  3AE9 D;  3AEG D;  3CIR D;  1YQ4 C;  2BS4 C;  2H88 C;  2WDV C;  4YT0 D;  2WS3 D;  1YQ3 C;  3AE8 C;  1L0V C;  2ACZ D;  2WDQ D;  1KF6 C;  3AEB C;  2WDR D;  3AED C;  1ZOY C;  1L0V D;  3AEE D;  5C3J C;  3SFE C;  2BS3 C;  2B76 C;  4YTN C;  4YTP C;  1QLB C;  1ZOY D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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