3CIRD

E. coli quinol fumarate reductase frda t234a mutation
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
119
structure length
119
Chain Sequence
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Fumarate reductase flavoprotein subunit
total genus 40
structure length 119
sequence length 119
chains with identical sequence P
ec nomenclature
pdb deposition date 2008-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02313 Fumarate_red_D Fumarate reductase subunit D
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3cirD00
2H88C 1KFYD 3VR9C 2WU2D 3AE8D 4YTMC 1YQ3D 3AEFD 3AE7D 2WS3D 3AE4C 3AE6C 5C2TD 2H89D 3P4RC 4YSXD 2ACZC 2B76C 4YSYD 3AE9C 5C3JD 3P4PD 2WU5D 3AE2C 2WQYC 4YSZC 3AE1C 3AE5C 3P4SC 2WDRC 3P4QD 4YT0D 3AEGD 4YTNC 1QLBC 3VR8C 2WP9D 3AECD 3SFDD 3VRAC 3SFEC 3AEEC 3VR9D 2FBWC 4YTMD 3ABVC 3AE4D 3AEAC 3AEBC 3AE6D 1ZP0C 1KF6C 2BS2C 2B76D 1YQ4C 3AE9D 1NENC 3AEDD 4YXDC 3AE3C 4YSYC 3AE2D 1ZOYC 2BS3C 3VRBC 2WQYD 3CIRC 4YSZD 2WDQD 1NEKD 2WU5C 3AE1D 3AE5D 3P4SD 4KX6C 2WDRD 4YTPD 2WDVC 2H88D 4YTND 1L0VC 4YTPC 5C3JC 3AEGC 3VR8D 1KFYC 2WU2C 2BS4C 3VRAD 3SFED 3AE8C 3AEED 1YQ3C 2FBWD 3AEFC 3AE7C 3P4RD 2ACZD 2WS3C 3ABVD 3SFDC 5C2TC 1E7PC 2H89C 4YSXC 3AEAD 3AEBD 1ZP0D 1KF6D 3P4PC 1YQ4D 1NEND 4YXDD 3AE3D 1ZOYD 3AEDC 3VRBD 3P4QC 3CIRD 4YT0C 4KX6D 2WDQC 2WDVD 1NEKC 2WP9C 3AECC 1L0VD
chains in the Genus database with same CATH superfamily
2H88C 1KFYD 3VR9C 1TFFA 2WU2D 3AE8D 4YTMC 1YQ3D 3AEFD 2ZFYA 4DHJA 3AE7D 2WS3D 3AE4C 3AE6C 5C2TD 2H89D 3P4RC 4YSXD 2ACZC 2B76C 4YSYD 3AE9C 5C3JD 4DHZA 3P4PD 2WU5D 3AE2C 2WQYC 4YSZC 3AE1C 3AE5C 3P4SC 2WDRC 3P4QD 4YT0D 3AEGD 4YTNC 1QLBC 4DDIA 3VR8C 2WP9D 3AECD 3SFDD 3VRAC 3SFEC 3AEEC 3VR9D 2FBWC 4YTMD 3ABVC 4DHIB 3VONA 3AE4D 3AEAC 3AEBC 3AE6D 1ZP0C 1KF6C 2BS2C 2B76D 1YQ4C 3AE9D 1NENC 3AEDD 4YXDC 3AE3C 4YSYC 3AE2D 1ZOYC 2BS3C 3VRBC 2WQYD 3CIRC 4YSZD 2WDQD 1NEKD 2WU5C 3AE1D 3AE5D 3P4SD 4KX6C 2WDRD 4YTPD 2WDVC 2H88D 4DDGA 4YTND 1L0VC 4YTPC 5C3JC 4FJVA 3AEGC 3VR8D 1KFYC 2WU2C 2BS4C 4I6LA 3VRAD 3SFED 3AE8C 3AEED 1YQ3C 2FBWD 3AEFC 3AE7C 3P4RD 2ACZD 2WS3C 3ABVD 3SFDC 5C2TC 1E7PC 2H89C 4YSXC 3AEAD 3AEBD 1ZP0D 1KF6D 3P4PC 4LDTA 1YQ4D 1NEND 4YXDD 3AE3D 1ZOYD 3AEDC 3VRBD 3P4QC 3CIRD 4YT0C 4KX6D 2WDQC 2WDVD 1NEKC 2WP9C 3AECC 1L0VD
chains in the Genus database with same CATH topology
2H88C 1KFYD 3VR9C 2WU2D 3AE8D 4YTMC 1YQ3D 3AEFD 3AE7D 2WS3D 3AE4C 3AE6C 5C2TD 2H89D 3P4RC 4YSXD 2ACZC 2B76C 4YSYD 3AE9C 5C3JD 3P4PD 2WU5D 3AE2C 2WQYC 4YSZC 3AE1C 3AE5C 3P4SC 2WDRC 3P4QD 4YT0D 3AEGD 4YTNC 1QLBC 3VR8C 2WP9D 3AECD 3SFDD 3VRAC 3SFEC 3AEEC 3VR9D 2FBWC 4YTMD 3ABVC 3AE4D 3AEAC 3AEBC 3AE6D 1ZP0C 1KF6C 2BS2C 2B76D 1YQ4C 3AE9D 1NENC 3AEDD 4YXDC 3AE3C 4YSYC 3AE2D 1ZOYC 2BS3C 3VRBC 2WQYD 3CIRC 4YSZD 2WDQD 1NEKD 2WU5C 3AE1D 3AE5D 3P4SD 4KX6C 2WDRD 4YTPD 2WDVC 2H88D 4YTND 1L0VC 4YTPC 5C3JC 3AEGC 3VR8D 1KFYC 2WU2C 2BS4C 3VRAD 3SFED 3AE8C 3AEED 1YQ3C 2FBWD 3AEFC 3AE7C 3P4RD 2ACZD 2WS3C 3ABVD 3SFDC 5C2TC 1E7PC 2H89C 4YSXC 3AEAD 3AEBD 1ZP0D 1KF6D 3P4PC 1YQ4D 1NEND 4YXDD 3AE3D 1ZOYD 3AEDC 3VRBD 3P4QC 3CIRD 4YT0C 4KX6D 2WDQC 2WDVD 1NEKC 2WP9C 3AECC 1L0VD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H88 C;  1KFY D;  3VR9 C;  2WU2 D;  3AE8 D;  4YTM C;  1YQ3 D;  3AEF D;  3AE7 D;  2WS3 D;  3AE4 C;  3AE6 C;  5C2T D;  2H89 D;  3P4R C;  4YSX D;  2ACZ C;  2B76 C;  4YSY D;  3AE9 C;  5C3J D;  3P4P D;  2WU5 D;  3AE2 C;  2WQY C;  4YSZ C;  3AE1 C;  3AE5 C;  3P4S C;  2WDR C;  3P4Q D;  4YT0 D;  3AEG D;  4YTN C;  1QLB C;  3VR8 C;  2WP9 D;  3AEC D;  3SFD D;  3VRA C;  3SFE C;  3AEE C;  3VR9 D;  2FBW C;  4YTM D;  3ABV C;  3AE4 D;  3AEA C;  3AEB C;  3AE6 D;  1ZP0 C;  1KF6 C;  2BS2 C;  2B76 D;  1YQ4 C;  3AE9 D;  1NEN C;  3AED D;  4YXD C;  3AE3 C;  4YSY C;  3AE2 D;  1ZOY C;  2BS3 C;  3VRB C;  2WQY D;  3CIR C;  4YSZ D;  2WDQ D;  1NEK D;  2WU5 C;  3AE1 D;  3AE5 D;  3P4S D;  4KX6 C;  2WDR D;  4YTP D;  2WDV C;  2H88 D;  4YTN D;  1L0V C;  4YTP C;  5C3J C;  3AEG C;  3VR8 D;  1KFY C;  2WU2 C;  2BS4 C;  3VRA D;  3SFE D;  3AE8 C;  3AEE D;  1YQ3 C;  2FBW D;  3AEF C;  3AE7 C;  3P4R D;  2ACZ D;  2WS3 C;  3ABV D;  3SFD C;  5C2T C;  1E7P C;  2H89 C;  4YSX C;  3AEA D;  3AEB D;  1ZP0 D;  1KF6 D;  3P4P C;  1YQ4 D;  1NEN D;  4YXD D;  3AE3 D;  1ZOY D;  3AED C;  3VRB D;  3P4Q C;  3CIR D;  4YT0 C;  4KX6 D;  2WDQ C;  2WDV D;  1NEK C;  2WP9 C;  3AEC C;  1L0V D; 
#chains in the Genus database with same CATH topology
 2H88 C;  1KFY D;  3VR9 C;  1TFF A;  2WU2 D;  3AE8 D;  4YTM C;  1YQ3 D;  3AEF D;  2ZFY A;  4DHJ A;  3AE7 D;  2WS3 D;  3AE4 C;  3AE6 C;  5C2T D;  2H89 D;  3P4R C;  4YSX D;  2ACZ C;  2B76 C;  4YSY D;  3AE9 C;  5C3J D;  4DHZ A;  3P4P D;  2WU5 D;  3AE2 C;  2WQY C;  4YSZ C;  3AE1 C;  3AE5 C;  3P4S C;  2WDR C;  3P4Q D;  4YT0 D;  3AEG D;  4YTN C;  1QLB C;  4DDI A;  3VR8 C;  2WP9 D;  3AEC D;  3SFD D;  3VRA C;  3SFE C;  3AEE C;  3VR9 D;  2FBW C;  4YTM D;  3ABV C;  4DHI B;  3VON A;  3AE4 D;  3AEA C;  3AEB C;  3AE6 D;  1ZP0 C;  1KF6 C;  2BS2 C;  2B76 D;  1YQ4 C;  3AE9 D;  1NEN C;  3AED D;  4YXD C;  3AE3 C;  4YSY C;  3AE2 D;  1ZOY C;  2BS3 C;  3VRB C;  2WQY D;  3CIR C;  4YSZ D;  2WDQ D;  1NEK D;  2WU5 C;  3AE1 D;  3AE5 D;  3P4S D;  4KX6 C;  2WDR D;  4YTP D;  2WDV C;  2H88 D;  4DDG A;  4YTN D;  1L0V C;  4YTP C;  5C3J C;  4FJV A;  3AEG C;  3VR8 D;  1KFY C;  2WU2 C;  2BS4 C;  4I6L A;  3VRA D;  3SFE D;  3AE8 C;  3AEE D;  1YQ3 C;  2FBW D;  3AEF C;  3AE7 C;  3P4R D;  2ACZ D;  2WS3 C;  3ABV D;  3SFD C;  5C2T C;  1E7P C;  2H89 C;  4YSX C;  3AEA D;  3AEB D;  1ZP0 D;  1KF6 D;  3P4P C;  4LDT A;  1YQ4 D;  1NEN D;  4YXD D;  3AE3 D;  1ZOY D;  3AED C;  3VRB D;  3P4Q C;  3CIR D;  4YT0 C;  4KX6 D;  2WDQ C;  2WDV D;  1NEK C;  2WP9 C;  3AEC C;  1L0V D; 
#chains in the Genus database with same CATH homology
 2H88 C;  1KFY D;  3VR9 C;  2WU2 D;  3AE8 D;  4YTM C;  1YQ3 D;  3AEF D;  3AE7 D;  2WS3 D;  3AE4 C;  3AE6 C;  5C2T D;  2H89 D;  3P4R C;  4YSX D;  2ACZ C;  2B76 C;  4YSY D;  3AE9 C;  5C3J D;  3P4P D;  2WU5 D;  3AE2 C;  2WQY C;  4YSZ C;  3AE1 C;  3AE5 C;  3P4S C;  2WDR C;  3P4Q D;  4YT0 D;  3AEG D;  4YTN C;  1QLB C;  3VR8 C;  2WP9 D;  3AEC D;  3SFD D;  3VRA C;  3SFE C;  3AEE C;  3VR9 D;  2FBW C;  4YTM D;  3ABV C;  3AE4 D;  3AEA C;  3AEB C;  3AE6 D;  1ZP0 C;  1KF6 C;  2BS2 C;  2B76 D;  1YQ4 C;  3AE9 D;  1NEN C;  3AED D;  4YXD C;  3AE3 C;  4YSY C;  3AE2 D;  1ZOY C;  2BS3 C;  3VRB C;  2WQY D;  3CIR C;  4YSZ D;  2WDQ D;  1NEK D;  2WU5 C;  3AE1 D;  3AE5 D;  3P4S D;  4KX6 C;  2WDR D;  4YTP D;  2WDV C;  2H88 D;  4YTN D;  1L0V C;  4YTP C;  5C3J C;  3AEG C;  3VR8 D;  1KFY C;  2WU2 C;  2BS4 C;  3VRA D;  3SFE D;  3AE8 C;  3AEE D;  1YQ3 C;  2FBW D;  3AEF C;  3AE7 C;  3P4R D;  2ACZ D;  2WS3 C;  3ABV D;  3SFD C;  5C2T C;  1E7P C;  2H89 C;  4YSX C;  3AEA D;  3AEB D;  1ZP0 D;  1KF6 D;  3P4P C;  1YQ4 D;  1NEN D;  4YXD D;  3AE3 D;  1ZOY D;  3AED C;  3VRB D;  3P4Q C;  3CIR D;  4YT0 C;  4KX6 D;  2WDQ C;  2WDV D;  1NEK C;  2WP9 C;  3AEC C;  1L0V D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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