3P4R | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	130
structure length	130
Chain Sequence	TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli 042
publication title	Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase. pubmed doi rcsb
molecule keywords	Fumarate reductase flavoprotein subunit
total genus	43
structure length	130
sequence length	130
chains with identical sequence	O
ec nomenclature
pdb deposition date	2010-10-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF02300	Fumarate_red_C	Fumarate reductase subunit C

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1300.10	Mainly Alpha	Up-down Bundle	3 helical TM bundles of succinate and fumarate reductases	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	3p4rC00

3AEDC 4YSZD 2WS3D 2WQYD 4YSZC 1YQ4C 2BS4C 2WS3C 2WQYC 3P4QC 4YSYD 3AE1C 4YSYC 1E7PC 3VR8D 3SFDC 1KF6C 3AE7D 3AEBC 3P4SC 3AE7C 3AE9D 3AEAC 2WDQC 1L0VC 4KX6D 3P4RC 1ZOYC 2WU2C 3AE3C 3AE5D 3AEFC 3AE6C 3P4PC 2ACZD 3AEDD 2ACZC 1YQ4D 2WP9C 3AEGC 3P4QD 3AE1D 1NEKC 3VRBC 2H88C 2WU5C 2H89C 1KF6D 3SFDD 3CIRD 5C2TD 3AEBD 3P4SD 3CIRC 5C2TC 3AEAD 2WDQD 1L0VD 3AE8D 4YTNC 3P4RD 1ZOYD 2WU2D 3AE3D 3AE8C 2BS3C 3AEFD 3AE6D 3P4PD 4YTMC 4YT0C 4YXDC 1KFYC 4YTPC 2WP9D 3AEGD 3AE4D 1NEKD 3AECD 3VR9C 3VRBD 3AE4C 2H88D 3AECC 2WU5D 2H89D 3AE2D 3AE2C 2BS2C 2WDVC 4YTND 1ZP0D 1ZP0C 3VRAD 4YTMD 1QLBC 4YT0D 5C3JD 4YXDD 3VRAC 2FBWD 1NEND 2WDRD 4YSXD 1KFYD 5C3JC 2FBWC 1NENC 2WDRC 4YSXC 4YTPD 3VR9D 2B76D 1YQ3D 3SFED 3ABVD 2B76C 1YQ3C 3SFEC 3ABVC 3VR8C 2WDVD 3AE9C 3AEED 3AEEC 4KX6C 3AE5C
chains in the Genus database with same CATH superfamily

4LDTA 3AEDC 4DDIA 4YSZD 2WS3D 2WQYD 4YSZC 1YQ4C 2BS4C 2WS3C 2WQYC 3VONA 3P4QC 4YSYD 3AE1C 4YSYC 1E7PC 3VR8D 3SFDC 1KF6C 3AE7D 3AEBC 3P4SC 3AE7C 3AE9D 4FJVA 3AEAC 2WDQC 1L0VC 4KX6D 4I6LA 3P4RC 1ZOYC 2WU2C 3AE3C 3AE5D 3AEFC 2ZFYA 3AE6C 3P4PC 2ACZD 3AEDD 2ACZC 1YQ4D 2WP9C 3AEGC 3P4QD 3AE1D 1NEKC 3VRBC 2H88C 2WU5C 2H89C 1KF6D 3SFDD 3CIRD 5C2TD 3AEBD 3P4SD 3CIRC 5C2TC 3AEAD 4DHZA 2WDQD 4DHIB 1L0VD 1TFFA 3AE8D 4YTNC 3P4RD 1ZOYD 2WU2D 3AE3D 3AE8C 2BS3C 3AEFD 3AE6D 3P4PD 4YTMC 4YT0C 4YXDC 1KFYC 4YTPC 2WP9D 3AEGD 3AE4D 1NEKD 3AECD 3VR9C 3VRBD 3AE4C 2H88D 3AECC 2WU5D 2H89D 3AE2D 4DDGA 3AE2C 2BS2C 2WDVC 4YTND 1ZP0D 1ZP0C 3VRAD 4YTMD 1QLBC 4YT0D 5C3JD 4YXDD 3VRAC 2FBWD 1NEND 2WDRD 4YSXD 1KFYD 5C3JC 2FBWC 1NENC 2WDRC 4YSXC 4YTPD 3VR9D 2B76D 1YQ3D 3SFED 3ABVD 2B76C 1YQ3C 3SFEC 3ABVC 3VR8C 2WDVD 3AE9C 3AEED 3AEEC 4KX6C 4DHJA 3AE5C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AED C;  4YSZ D;  2WS3 D;  2WQY D;  4YSZ C;  1YQ4 C;  2BS4 C;  2WS3 C;  2WQY C;  3P4Q C;  4YSY D;  3AE1 C;  4YSY C;  1E7P C;  3VR8 D;  3SFD C;  1KF6 C;  3AE7 D;  3AEB C;  3P4S C;  3AE7 C;  3AE9 D;  3AEA C;  2WDQ C;  1L0V C;  4KX6 D;  3P4R C;  1ZOY C;  2WU2 C;  3AE3 C;  3AE5 D;  3AEF C;  3AE6 C;  3P4P C;  2ACZ D;  3AED D;  2ACZ C;  1YQ4 D;  2WP9 C;  3AEG C;  3P4Q D;  3AE1 D;  1NEK C;  3VRB C;  2H88 C;  2WU5 C;  2H89 C;  1KF6 D;  3SFD D;  3CIR D;  5C2T D;  3AEB D;  3P4S D;  3CIR C;  5C2T C;  3AEA D;  2WDQ D;  1L0V D;  3AE8 D;  4YTN C;  3P4R D;  1ZOY D;  2WU2 D;  3AE3 D;  3AE8 C;  2BS3 C;  3AEF D;  3AE6 D;  3P4P D;  4YTM C;  4YT0 C;  4YXD C;  1KFY C;  4YTP C;  2WP9 D;  3AEG D;  3AE4 D;  1NEK D;  3AEC D;  3VR9 C;  3VRB D;  3AE4 C;  2H88 D;  3AEC C;  2WU5 D;  2H89 D;  3AE2 D;  3AE2 C;  2BS2 C;  2WDV C;  4YTN D;  1ZP0 D;  1ZP0 C;  3VRA D;  4YTM D;  1QLB C;  4YT0 D;  5C3J D;  4YXD D;  3VRA C;  2FBW D;  1NEN D;  2WDR D;  4YSX D;  1KFY D;  5C3J C;  2FBW C;  1NEN C;  2WDR C;  4YSX C;  4YTP D;  3VR9 D;  2B76 D;  1YQ3 D;  3SFE D;  3ABV D;  2B76 C;  1YQ3 C;  3SFE C;  3ABV C;  3VR8 C;  2WDV D;  3AE9 C;  3AEE D;  3AEE C;  4KX6 C;  3AE5 C; 
#chains in the Genus database with same CATH topology
 4LDT A;  3AED C;  4DDI A;  4YSZ D;  2WS3 D;  2WQY D;  4YSZ C;  1YQ4 C;  2BS4 C;  2WS3 C;  2WQY C;  3VON A;  3P4Q C;  4YSY D;  3AE1 C;  4YSY C;  1E7P C;  3VR8 D;  3SFD C;  1KF6 C;  3AE7 D;  3AEB C;  3P4S C;  3AE7 C;  3AE9 D;  4FJV A;  3AEA C;  2WDQ C;  1L0V C;  4KX6 D;  4I6L A;  3P4R C;  1ZOY C;  2WU2 C;  3AE3 C;  3AE5 D;  3AEF C;  2ZFY A;  3AE6 C;  3P4P C;  2ACZ D;  3AED D;  2ACZ C;  1YQ4 D;  2WP9 C;  3AEG C;  3P4Q D;  3AE1 D;  1NEK C;  3VRB C;  2H88 C;  2WU5 C;  2H89 C;  1KF6 D;  3SFD D;  3CIR D;  5C2T D;  3AEB D;  3P4S D;  3CIR C;  5C2T C;  3AEA D;  4DHZ A;  2WDQ D;  4DHI B;  1L0V D;  1TFF A;  3AE8 D;  4YTN C;  3P4R D;  1ZOY D;  2WU2 D;  3AE3 D;  3AE8 C;  2BS3 C;  3AEF D;  3AE6 D;  3P4P D;  4YTM C;  4YT0 C;  4YXD C;  1KFY C;  4YTP C;  2WP9 D;  3AEG D;  3AE4 D;  1NEK D;  3AEC D;  3VR9 C;  3VRB D;  3AE4 C;  2H88 D;  3AEC C;  2WU5 D;  2H89 D;  3AE2 D;  4DDG A;  3AE2 C;  2BS2 C;  2WDV C;  4YTN D;  1ZP0 D;  1ZP0 C;  3VRA D;  4YTM D;  1QLB C;  4YT0 D;  5C3J D;  4YXD D;  3VRA C;  2FBW D;  1NEN D;  2WDR D;  4YSX D;  1KFY D;  5C3J C;  2FBW C;  1NEN C;  2WDR C;  4YSX C;  4YTP D;  3VR9 D;  2B76 D;  1YQ3 D;  3SFE D;  3ABV D;  2B76 C;  1YQ3 C;  3SFE C;  3ABV C;  3VR8 C;  2WDV D;  3AE9 C;  3AEE D;  3AEE C;  4KX6 C;  4DHJ A;  3AE5 C; 
#chains in the Genus database with same CATH homology
 3AED C;  4YSZ D;  2WS3 D;  2WQY D;  4YSZ C;  1YQ4 C;  2BS4 C;  2WS3 C;  2WQY C;  3P4Q C;  4YSY D;  3AE1 C;  4YSY C;  1E7P C;  3VR8 D;  3SFD C;  1KF6 C;  3AE7 D;  3AEB C;  3P4S C;  3AE7 C;  3AE9 D;  3AEA C;  2WDQ C;  1L0V C;  4KX6 D;  3P4R C;  1ZOY C;  2WU2 C;  3AE3 C;  3AE5 D;  3AEF C;  3AE6 C;  3P4P C;  2ACZ D;  3AED D;  2ACZ C;  1YQ4 D;  2WP9 C;  3AEG C;  3P4Q D;  3AE1 D;  1NEK C;  3VRB C;  2H88 C;  2WU5 C;  2H89 C;  1KF6 D;  3SFD D;  3CIR D;  5C2T D;  3AEB D;  3P4S D;  3CIR C;  5C2T C;  3AEA D;  2WDQ D;  1L0V D;  3AE8 D;  4YTN C;  3P4R D;  1ZOY D;  2WU2 D;  3AE3 D;  3AE8 C;  2BS3 C;  3AEF D;  3AE6 D;  3P4P D;  4YTM C;  4YT0 C;  4YXD C;  1KFY C;  4YTP C;  2WP9 D;  3AEG D;  3AE4 D;  1NEK D;  3AEC D;  3VR9 C;  3VRB D;  3AE4 C;  2H88 D;  3AEC C;  2WU5 D;  2H89 D;  3AE2 D;  3AE2 C;  2BS2 C;  2WDV C;  4YTN D;  1ZP0 D;  1ZP0 C;  3VRA D;  4YTM D;  1QLB C;  4YT0 D;  5C3J D;  4YXD D;  3VRA C;  2FBW D;  1NEN D;  2WDR D;  4YSX D;  1KFY D;  5C3J C;  2FBW C;  1NEN C;  2WDR C;  4YSX C;  4YTP D;  3VR9 D;  2B76 D;  1YQ3 D;  3SFE D;  3ABV D;  2B76 C;  1YQ3 C;  3SFE C;  3ABV C;  3VR8 C;  2WDV D;  3AE9 C;  3AEE D;  3AEE C;  4KX6 C;  3AE5 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3P4RC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations