3VR9C

Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode ascaris suum with the specific inhibitor flutolanil
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
153
structure length
153
Chain Sequence
EKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERHKKATLPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of mitochondrial quinol-fumarate reductase from parasitic nematode Ascaris suum
rcsb
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Flavoprotein subunit of complex II
total genus 44
structure length 153
sequence length 153
chains with identical sequence G
ec nomenclature
pdb deposition date 2012-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3vr9C00
2WS3D 3AEBD 1NEND 4YTMC 3AE2D 2WDVD 3VRBC 1KFYD 2H89D 2WU2D 5C3JC 3AE7C 4YSZD 3VR8D 2WU5D 3SFDC 3AE8C 3VR9C 2B76C 1KFYC 4YXDD 4KX6D 4YTPD 2H89C 2WU2C 3AE6C 3AE4D 3AEGC 3AE9D 3AEDD 3AE1D 3AE5D 1YQ4C 1ZOYC 3SFEC 2FBWC 4YSYC 3ABVC 3P4QC 4YTND 1NEKD 4YXDC 3AECC 4YTPC 3CIRD 2ACZD 3AE3D 2WS3C 3AEED 3AEBC 4YTNC 1NEKC 2WQYD 2WDRD 1NENC 3AE2C 3P4PD 2WDVC 1KF6D 3VRAD 4YSZC 3VR8C 2WU5C 4YT0D 1ZP0D 2WDQD 3P4RD 3P4SD 1L0VD 4KX6C 3AE4C 3VRAC 3AE9C 3AEDC 3AE1C 3AE5C 3AEAD 2H88D 1ZP0C 1E7PC 2BS2C 2WP9D 3CIRC 2ACZC 3VRBD 3AE3C 3AEEC 5C3JD 4YSXD 3AE7D 2WQYC 2WDRC 2WP9C 3P4PC 3SFDD 3AE8D 3VR9D 2B76D 1QLBC 1KF6C 5C2TD 2BS3C 4YSXC 3AE6D 3AEGD 1YQ3D 1YQ4D 3AEFD 4YT0C 1ZOYD 3SFED 2BS4C 2FBWD 2WDQC 4YSYD 3ABVD 3P4QD 3P4RC 3P4SC 1L0VC 4YTMD 3AECD 5C2TC 3AEAC 1YQ3C 2H88C 3AEFC
chains in the Genus database with same CATH superfamily
2WS3D 3AEBD 1NEND 4YTMC 3AE2D 2WDVD 3VRBC 1KFYD 2H89D 2WU2D 5C3JC 3AE7C 4DHJA 4YSZD 3VR8D 2WU5D 3SFDC 3AE8C 3VR9C 2B76C 1KFYC 4YXDD 4KX6D 4YTPD 2H89C 2WU2C 3AE6C 3AE4D 3AEGC 3AE9D 3AEDD 3AE1D 3AE5D 1YQ4C 1ZOYC 3SFEC 2FBWC 4YSYC 3ABVC 3P4QC 4YTND 1NEKD 4YXDC 3AECC 4YTPC 3CIRD 2ACZD 3AE3D 2WS3C 3AEED 3AEBC 4YTNC 1NEKC 2WQYD 2WDRD 1NENC 3AE2C 3P4PD 4LDTA 2WDVC 1KF6D 3VRAD 4YSZC 3VR8C 2WU5C 4YT0D 1ZP0D 3VONA 2WDQD 3P4RD 3P4SD 1L0VD 4I6LA 4KX6C 3AE4C 3VRAC 3AE9C 3AEDC 3AE1C 3AE5C 3AEAD 2H88D 1ZP0C 1E7PC 2BS2C 2WP9D 3CIRC 2ACZC 3VRBD 3AE3C 4DDIA 3AEEC 5C3JD 4YSXD 3AE7D 2ZFYA 2WQYC 1TFFA 2WDRC 2WP9C 3P4PC 3SFDD 4DHZA 3AE8D 3VR9D 2B76D 1QLBC 1KF6C 4DDGA 5C2TD 2BS3C 4YSXC 3AE6D 3AEGD 1YQ3D 1YQ4D 3AEFD 4YT0C 4DHIB 1ZOYD 3SFED 2BS4C 2FBWD 2WDQC 4YSYD 3ABVD 3P4QD 3P4RC 3P4SC 1L0VC 4YTMD 3AECD 5C2TC 4FJVA 3AEAC 1YQ3C 2H88C 3AEFC
chains in the Genus database with same CATH topology
2WS3D 3AEBD 1NEND 4YTMC 3AE2D 2WDVD 3VRBC 1KFYD 2H89D 2WU2D 5C3JC 3AE7C 4YSZD 3VR8D 2WU5D 3SFDC 3AE8C 3VR9C 2B76C 1KFYC 4YXDD 4KX6D 4YTPD 2H89C 2WU2C 3AE6C 3AE4D 3AEGC 3AE9D 3AEDD 3AE1D 3AE5D 1YQ4C 1ZOYC 3SFEC 2FBWC 4YSYC 3ABVC 3P4QC 4YTND 1NEKD 4YXDC 3AECC 4YTPC 3CIRD 2ACZD 3AE3D 2WS3C 3AEED 3AEBC 4YTNC 1NEKC 2WQYD 2WDRD 1NENC 3AE2C 3P4PD 2WDVC 1KF6D 3VRAD 4YSZC 3VR8C 2WU5C 4YT0D 1ZP0D 2WDQD 3P4RD 3P4SD 1L0VD 4KX6C 3AE4C 3VRAC 3AE9C 3AEDC 3AE1C 3AE5C 3AEAD 2H88D 1ZP0C 1E7PC 2BS2C 2WP9D 3CIRC 2ACZC 3VRBD 3AE3C 3AEEC 5C3JD 4YSXD 3AE7D 2WQYC 2WDRC 2WP9C 3P4PC 3SFDD 3AE8D 3VR9D 2B76D 1QLBC 1KF6C 5C2TD 2BS3C 4YSXC 3AE6D 3AEGD 1YQ3D 1YQ4D 3AEFD 4YT0C 1ZOYD 3SFED 2BS4C 2FBWD 2WDQC 4YSYD 3ABVD 3P4QD 3P4RC 3P4SC 1L0VC 4YTMD 3AECD 5C2TC 3AEAC 1YQ3C 2H88C 3AEFC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WS3 D;  3AEB D;  1NEN D;  4YTM C;  3AE2 D;  2WDV D;  3VRB C;  1KFY D;  2H89 D;  2WU2 D;  5C3J C;  3AE7 C;  4YSZ D;  3VR8 D;  2WU5 D;  3SFD C;  3AE8 C;  3VR9 C;  2B76 C;  1KFY C;  4YXD D;  4KX6 D;  4YTP D;  2H89 C;  2WU2 C;  3AE6 C;  3AE4 D;  3AEG C;  3AE9 D;  3AED D;  3AE1 D;  3AE5 D;  1YQ4 C;  1ZOY C;  3SFE C;  2FBW C;  4YSY C;  3ABV C;  3P4Q C;  4YTN D;  1NEK D;  4YXD C;  3AEC C;  4YTP C;  3CIR D;  2ACZ D;  3AE3 D;  2WS3 C;  3AEE D;  3AEB C;  4YTN C;  1NEK C;  2WQY D;  2WDR D;  1NEN C;  3AE2 C;  3P4P D;  2WDV C;  1KF6 D;  3VRA D;  4YSZ C;  3VR8 C;  2WU5 C;  4YT0 D;  1ZP0 D;  2WDQ D;  3P4R D;  3P4S D;  1L0V D;  4KX6 C;  3AE4 C;  3VRA C;  3AE9 C;  3AED C;  3AE1 C;  3AE5 C;  3AEA D;  2H88 D;  1ZP0 C;  1E7P C;  2BS2 C;  2WP9 D;  3CIR C;  2ACZ C;  3VRB D;  3AE3 C;  3AEE C;  5C3J D;  4YSX D;  3AE7 D;  2WQY C;  2WDR C;  2WP9 C;  3P4P C;  3SFD D;  3AE8 D;  3VR9 D;  2B76 D;  1QLB C;  1KF6 C;  5C2T D;  2BS3 C;  4YSX C;  3AE6 D;  3AEG D;  1YQ3 D;  1YQ4 D;  3AEF D;  4YT0 C;  1ZOY D;  3SFE D;  2BS4 C;  2FBW D;  2WDQ C;  4YSY D;  3ABV D;  3P4Q D;  3P4R C;  3P4S C;  1L0V C;  4YTM D;  3AEC D;  5C2T C;  3AEA C;  1YQ3 C;  2H88 C;  3AEF C; 
#chains in the Genus database with same CATH topology
 2WS3 D;  3AEB D;  1NEN D;  4YTM C;  3AE2 D;  2WDV D;  3VRB C;  1KFY D;  2H89 D;  2WU2 D;  5C3J C;  3AE7 C;  4DHJ A;  4YSZ D;  3VR8 D;  2WU5 D;  3SFD C;  3AE8 C;  3VR9 C;  2B76 C;  1KFY C;  4YXD D;  4KX6 D;  4YTP D;  2H89 C;  2WU2 C;  3AE6 C;  3AE4 D;  3AEG C;  3AE9 D;  3AED D;  3AE1 D;  3AE5 D;  1YQ4 C;  1ZOY C;  3SFE C;  2FBW C;  4YSY C;  3ABV C;  3P4Q C;  4YTN D;  1NEK D;  4YXD C;  3AEC C;  4YTP C;  3CIR D;  2ACZ D;  3AE3 D;  2WS3 C;  3AEE D;  3AEB C;  4YTN C;  1NEK C;  2WQY D;  2WDR D;  1NEN C;  3AE2 C;  3P4P D;  4LDT A;  2WDV C;  1KF6 D;  3VRA D;  4YSZ C;  3VR8 C;  2WU5 C;  4YT0 D;  1ZP0 D;  3VON A;  2WDQ D;  3P4R D;  3P4S D;  1L0V D;  4I6L A;  4KX6 C;  3AE4 C;  3VRA C;  3AE9 C;  3AED C;  3AE1 C;  3AE5 C;  3AEA D;  2H88 D;  1ZP0 C;  1E7P C;  2BS2 C;  2WP9 D;  3CIR C;  2ACZ C;  3VRB D;  3AE3 C;  4DDI A;  3AEE C;  5C3J D;  4YSX D;  3AE7 D;  2ZFY A;  2WQY C;  1TFF A;  2WDR C;  2WP9 C;  3P4P C;  3SFD D;  4DHZ A;  3AE8 D;  3VR9 D;  2B76 D;  1QLB C;  1KF6 C;  4DDG A;  5C2T D;  2BS3 C;  4YSX C;  3AE6 D;  3AEG D;  1YQ3 D;  1YQ4 D;  3AEF D;  4YT0 C;  4DHI B;  1ZOY D;  3SFE D;  2BS4 C;  2FBW D;  2WDQ C;  4YSY D;  3ABV D;  3P4Q D;  3P4R C;  3P4S C;  1L0V C;  4YTM D;  3AEC D;  5C2T C;  4FJV A;  3AEA C;  1YQ3 C;  2H88 C;  3AEF C; 
#chains in the Genus database with same CATH homology
 2WS3 D;  3AEB D;  1NEN D;  4YTM C;  3AE2 D;  2WDV D;  3VRB C;  1KFY D;  2H89 D;  2WU2 D;  5C3J C;  3AE7 C;  4YSZ D;  3VR8 D;  2WU5 D;  3SFD C;  3AE8 C;  3VR9 C;  2B76 C;  1KFY C;  4YXD D;  4KX6 D;  4YTP D;  2H89 C;  2WU2 C;  3AE6 C;  3AE4 D;  3AEG C;  3AE9 D;  3AED D;  3AE1 D;  3AE5 D;  1YQ4 C;  1ZOY C;  3SFE C;  2FBW C;  4YSY C;  3ABV C;  3P4Q C;  4YTN D;  1NEK D;  4YXD C;  3AEC C;  4YTP C;  3CIR D;  2ACZ D;  3AE3 D;  2WS3 C;  3AEE D;  3AEB C;  4YTN C;  1NEK C;  2WQY D;  2WDR D;  1NEN C;  3AE2 C;  3P4P D;  2WDV C;  1KF6 D;  3VRA D;  4YSZ C;  3VR8 C;  2WU5 C;  4YT0 D;  1ZP0 D;  2WDQ D;  3P4R D;  3P4S D;  1L0V D;  4KX6 C;  3AE4 C;  3VRA C;  3AE9 C;  3AED C;  3AE1 C;  3AE5 C;  3AEA D;  2H88 D;  1ZP0 C;  1E7P C;  2BS2 C;  2WP9 D;  3CIR C;  2ACZ C;  3VRB D;  3AE3 C;  3AEE C;  5C3J D;  4YSX D;  3AE7 D;  2WQY C;  2WDR C;  2WP9 C;  3P4P C;  3SFD D;  3AE8 D;  3VR9 D;  2B76 D;  1QLB C;  1KF6 C;  5C2T D;  2BS3 C;  4YSX C;  3AE6 D;  3AEG D;  1YQ3 D;  1YQ4 D;  3AEF D;  4YT0 C;  1ZOY D;  3SFE D;  2BS4 C;  2FBW D;  2WDQ C;  4YSY D;  3ABV D;  3P4Q D;  3P4R C;  3P4S C;  1L0V C;  4YTM D;  3AEC D;  5C2T C;  3AEA C;  1YQ3 C;  2H88 C;  3AEF C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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