3W5WA

Mn2+-gmp complex of nanornase (nrn) from bacteroides fragilis
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
342
structure length
340
Chain Sequence
LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins
rcsb
molecule tags Hydrolase
source organism Bacteroides fragilis
molecule keywords Putative exopolyphosphatase-related protein
total genus 107
structure length 340
sequence length 342
ec nomenclature
pdb deposition date 2013-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 3w5wA02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 3w5wA01
2QB8A 3DEVA 2QB6A 1WPMA 4PY9A 1I74A 1IR6A 1K23A 1K20A 1WPNA 2ZXRA 3W5WA 4LS9A 2QB7A 2HAWA 2EB0A 1WPPA 2ZXOA 4RPAA 2ENXA 2ZXPA 2IW4A
chains in the Genus database with same CATH superfamily
2KW7A 2PVZA 4Q60A 5HA4A 2YMAA 2ZVFA 5IWEA 1K20A 1GQZA 2OTNA 1WPNA 2Q9HA 1S7JA 3WQZA 1SDJA 4LS9A 4IJZA 1WPPA 4J9XA 2GKEA 5GL4A 4LG3A 2KPTA 1U1XA 4IK0A 1WPMA 5H2GA 2PW0A 4K7XA 4LB0A 1XUBA 1K23A 4OA3A 4JUUA 2ZXRA 2GKJA 2QB7A 2HAWA 3EJXA 2MPBA 2ZXOA 2H9FA 1W62A 2ZXPA 3EKMA 4K8LA 4K7GB 4J9WA 5ANPA 5GL3A 4DUNA 2LT2A 4FC5A 1U1VA 1XUAA 2QB8A 3DEVA 4JBDA 3ICJA 3EDNA 4Q2HA 2AZPA 1I74A 3FVEA 1QYAA 5H2YA 5GL2A 3PVHA 1T6KA 5GKXA 3W5WA 2EB0A 1U0KA 4JD7A 3PTJA 2IW4A 3IGHX 1TM0A 1BWZA 2Q9JA 1U1WA 2QB6A 1YM5A 3PW9A 4PY9A 3G98A 1IR6A 5M47A 4JCIA 3G7KA 4RPAA 2ENXA 1W61A 1QY9A 4DWZA 4GL6A
chains in the Genus database with same CATH topology
2KW7A 2PVZA 4Q60A 5HA4A 2YMAA 2ZVFA 5IWEA 1K20A 1GQZA 2OTNA 1WPNA 2Q9HA 1S7JA 3WQZA 1SDJA 4LS9A 4IJZA 1WPPA 4J9XA 2GKEA 5GL4A 4LG3A 2KPTA 1U1XA 4IK0A 1WPMA 5H2GA 2PW0A 4K7XA 4LB0A 1XUBA 1K23A 4OA3A 4JUUA 2ZXRA 2GKJA 2QB7A 2HAWA 3EJXA 2MPBA 2ZXOA 2H9FA 1W62A 2ZXPA 3EKMA 4K8LA 4K7GB 4J9WA 5ANPA 5GL3A 4DUNA 2LT2A 4FC5A 1U1VA 1XUAA 2QB8A 3DEVA 4JBDA 3ICJA 3EDNA 4Q2HA 2AZPA 1I74A 3FVEA 1QYAA 5H2YA 5GL2A 3PVHA 1T6KA 5GKXA 3W5WA 2EB0A 1U0KA 4JD7A 3PTJA 2IW4A 3IGHX 1TM0A 1BWZA 2Q9JA 1U1WA 2QB6A 1YM5A 3PW9A 4PY9A 3G98A 1IR6A 5M47A 4JCIA 3G7KA 4RPAA 2ENXA 1W61A 1QY9A 4DWZA 4GL6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QB8 A;  3DEV A;  2QB6 A;  1WPM A;  4PY9 A;  1I74 A;  1IR6 A;  1K23 A;  1K20 A;  1WPN A;  2ZXR A;  3W5W A;  4LS9 A;  2QB7 A;  2HAW A;  2EB0 A;  1WPP A;  2ZXO A;  4RPA A;  2ENX A;  2ZXP A;  2IW4 A; 
#chains in the Genus database with same CATH topology
 2KW7 A;  2PVZ A;  4Q60 A;  5HA4 A;  2YMA A;  2ZVF A;  5IWE A;  1K20 A;  1GQZ A;  2OTN A;  1WPN A;  2Q9H A;  1S7J A;  3WQZ A;  1SDJ A;  4LS9 A;  4IJZ A;  1WPP A;  4J9X A;  2GKE A;  5GL4 A;  4LG3 A;  2KPT A;  1U1X A;  4IK0 A;  1WPM A;  5H2G A;  2PW0 A;  4K7X A;  4LB0 A;  1XUB A;  1K23 A;  4OA3 A;  4JUU A;  2ZXR A;  2GKJ A;  2QB7 A;  2HAW A;  3EJX A;  2MPB A;  2ZXO A;  2H9F A;  1W62 A;  2ZXP A;  3EKM A;  4K8L A;  4K7G B;  4J9W A;  5ANP A;  5GL3 A;  4DUN A;  2LT2 A;  4FC5 A;  1U1V A;  1XUA A;  2QB8 A;  3DEV A;  4JBD A;  3ICJ A;  3EDN A;  4Q2H A;  2AZP A;  1I74 A;  3FVE A;  1QYA A;  5H2Y A;  5GL2 A;  3PVH A;  1T6K A;  5GKX A;  3W5W A;  2EB0 A;  1U0K A;  4JD7 A;  3PTJ A;  2IW4 A;  3IGH X;  1TM0 A;  1BWZ A;  2Q9J A;  1U1W A;  2QB6 A;  1YM5 A;  3PW9 A;  4PY9 A;  3G98 A;  1IR6 A;  5M47 A;  4JCI A;  3G7K A;  4RPA A;  2ENX A;  1W61 A;  1QY9 A;  4DWZ A;  4GL6 A; 
#chains in the Genus database with same CATH homology
 2KW7 A;  2PVZ A;  4Q60 A;  5HA4 A;  2YMA A;  2ZVF A;  5IWE A;  1K20 A;  1GQZ A;  2OTN A;  1WPN A;  2Q9H A;  1S7J A;  3WQZ A;  1SDJ A;  4LS9 A;  4IJZ A;  1WPP A;  4J9X A;  2GKE A;  5GL4 A;  4LG3 A;  2KPT A;  1U1X A;  4IK0 A;  1WPM A;  5H2G A;  2PW0 A;  4K7X A;  4LB0 A;  1XUB A;  1K23 A;  4OA3 A;  4JUU A;  2ZXR A;  2GKJ A;  2QB7 A;  2HAW A;  3EJX A;  2MPB A;  2ZXO A;  2H9F A;  1W62 A;  2ZXP A;  3EKM A;  4K8L A;  4K7G B;  4J9W A;  5ANP A;  5GL3 A;  4DUN A;  2LT2 A;  4FC5 A;  1U1V A;  1XUA A;  2QB8 A;  3DEV A;  4JBD A;  3ICJ A;  3EDN A;  4Q2H A;  2AZP A;  1I74 A;  3FVE A;  1QYA A;  5H2Y A;  5GL2 A;  3PVH A;  1T6K A;  5GKX A;  3W5W A;  2EB0 A;  1U0K A;  4JD7 A;  3PTJ A;  2IW4 A;  3IGH X;  1TM0 A;  1BWZ A;  2Q9J A;  1U1W A;  2QB6 A;  1YM5 A;  3PW9 A;  4PY9 A;  3G98 A;  1IR6 A;  5M47 A;  4JCI A;  3G7K A;  4RPA A;  2ENX A;  1W61 A;  1QY9 A;  4DWZ A;  4GL6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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