4YSXD

Crystal structure of mitochondrial rhodoquinol-fumarate reductase from ascaris suum with the specific inhibitor nn23
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
129
structure length
129
Chain Sequence
TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (42-46)AH2 (55-78)AH4 (115-142)AH3 (82-107)EMPTY3H1 (110-112)O1 (107-109)TII1 (46-49)Updating...
connected with : NaN
publication title Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria
pubmed doi rcsb
molecule keywords Succinate dehydrogenase flavoprotein
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 40
structure length 129
sequence length 129
chains with identical sequence H
ec nomenclature
pdb deposition date 2015-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF05328 CybS CybS, succinate dehydrogenase cytochrome B small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 4ysxD00
4YT0C 4YSXC 3VRBD 2H88C 3P4RC 1YQ4D 3CIRC 3P4SD 1ZP0C 3VR8C 3AE3C 3AEFD 2WU2C 1NEKC 3AE4D 3AEED 2WQYC 4YTMC 1ZOYC 5C2TC 3AEAC 3ABVC 2B76C 2H89D 3AE6C 3VR9C 3AEDC 3SFDD 4YT0D 2WDRC 3VRAD 2H88D 4YSYD 2WDQD 3AEBD 5C3JC 3AEGC 4YTND 1ZP0D 3AE2C 1KFYD 3AE9D 3AE3D 4YTPC 1NEND 3P4QD 4KX6C 2FBWD 4YTMD 2WP9C 1YQ3C 1KF6D 2WU5C 3ABVD 3AE5C 3AE1C 2WDRD 3SFED 3AE8D 2WDVC 2ACZC 4YXDC 3P4PC 5C3JD 1QLBC 4YSXD 3AEGD 2WS3C 3P4RD 1E7PC 4YSZC 4KX6D 3CIRD 2BS2C 3VRBC 3VR8D 2WP9D 2WU5D 3AE5D 1YQ4C 2WU2D 3P4SC 1NEKD 2WQYD 1ZOYD 5C2TD 3AEAD 2B76D 3AE6D 3VR9D 3AEDD 2ACZD 3AEFC 3AEEC 2H89C 3SFDC 4YSZD 3AE7C 1L0VC 3AECC 2BS4C 3VRAC 2BS3C 3AE2D 4YSYC 4YTPD 2WDQC 3AEBC 4YTNC 1YQ3D 1KFYC 3AE9C 1NENC 3P4QC 3AE1D 2FBWC 1KF6C 2WDVD 4YXDD 3P4PD 3AE4C 3AE7D 1L0VD 3AECD 2WS3D 3SFEC 3AE8C
chains in the Genus database with same CATH superfamily
4YT0C 4YSXC 3VRBD 2H88C 3P4RC 1YQ4D 3CIRC 3P4SD 1ZP0C 3VR8C 4DHIB 3AE3C 3AEFD 2WU2C 1NEKC 3AE4D 3AEED 2WQYC 4LDTA 4YTMC 1ZOYC 5C2TC 3AEAC 3ABVC 2B76C 3VONA 2H89D 3AE6C 3VR9C 3AEDC 3SFDD 4YT0D 2WDRC 2ZFYA 3VRAD 2H88D 4YSYD 2WDQD 3AEBD 5C3JC 3AEGC 4YTND 1ZP0D 3AE2C 1KFYD 3AE9D 3AE3D 4YTPC 1NEND 3P4QD 4KX6C 2FBWD 4YTMD 2WP9C 1YQ3C 1KF6D 2WU5C 3ABVD 4DDIA 3AE5C 3AE1C 2WDRD 3SFED 3AE8D 2WDVC 2ACZC 4YXDC 3P4PC 5C3JD 1QLBC 4YSXD 3AEGD 2WS3C 3P4RD 1E7PC 4FJVA 4YSZC 4KX6D 3CIRD 2BS2C 3VRBC 3VR8D 2WP9D 2WU5D 3AE5D 1YQ4C 2WU2D 3P4SC 1NEKD 2WQYD 1ZOYD 5C2TD 3AEAD 4DHZA 2B76D 3AE6D 3VR9D 3AEDD 2ACZD 3AEFC 3AEEC 2H89C 3SFDC 4YSZD 3AE7C 1L0VC 3AECC 2BS4C 3VRAC 2BS3C 3AE2D 4I6LA 4YSYC 4YTPD 2WDQC 3AEBC 4DDGA 4YTNC 1YQ3D 1KFYC 3AE9C 1NENC 3P4QC 3AE1D 2FBWC 1KF6C 1TFFA 2WDVD 4YXDD 3P4PD 3AE4C 3AE7D 1L0VD 3AECD 2WS3D 4DHJA 3SFEC 3AE8C
chains in the Genus database with same CATH topology
4YT0C 4YSXC 3VRBD 2H88C 3P4RC 1YQ4D 3CIRC 3P4SD 1ZP0C 3VR8C 3AE3C 3AEFD 2WU2C 1NEKC 3AE4D 3AEED 2WQYC 4YTMC 1ZOYC 5C2TC 3AEAC 3ABVC 2B76C 2H89D 3AE6C 3VR9C 3AEDC 3SFDD 4YT0D 2WDRC 3VRAD 2H88D 4YSYD 2WDQD 3AEBD 5C3JC 3AEGC 4YTND 1ZP0D 3AE2C 1KFYD 3AE9D 3AE3D 4YTPC 1NEND 3P4QD 4KX6C 2FBWD 4YTMD 2WP9C 1YQ3C 1KF6D 2WU5C 3ABVD 3AE5C 3AE1C 2WDRD 3SFED 3AE8D 2WDVC 2ACZC 4YXDC 3P4PC 5C3JD 1QLBC 4YSXD 3AEGD 2WS3C 3P4RD 1E7PC 4YSZC 4KX6D 3CIRD 2BS2C 3VRBC 3VR8D 2WP9D 2WU5D 3AE5D 1YQ4C 2WU2D 3P4SC 1NEKD 2WQYD 1ZOYD 5C2TD 3AEAD 2B76D 3AE6D 3VR9D 3AEDD 2ACZD 3AEFC 3AEEC 2H89C 3SFDC 4YSZD 3AE7C 1L0VC 3AECC 2BS4C 3VRAC 2BS3C 3AE2D 4YSYC 4YTPD 2WDQC 3AEBC 4YTNC 1YQ3D 1KFYC 3AE9C 1NENC 3P4QC 3AE1D 2FBWC 1KF6C 2WDVD 4YXDD 3P4PD 3AE4C 3AE7D 1L0VD 3AECD 2WS3D 3SFEC 3AE8C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YT0 C;  4YSX C;  3VRB D;  2H88 C;  3P4R C;  1YQ4 D;  3CIR C;  3P4S D;  1ZP0 C;  3VR8 C;  3AE3 C;  3AEF D;  2WU2 C;  1NEK C;  3AE4 D;  3AEE D;  2WQY C;  4YTM C;  1ZOY C;  5C2T C;  3AEA C;  3ABV C;  2B76 C;  2H89 D;  3AE6 C;  3VR9 C;  3AED C;  3SFD D;  4YT0 D;  2WDR C;  3VRA D;  2H88 D;  4YSY D;  2WDQ D;  3AEB D;  5C3J C;  3AEG C;  4YTN D;  1ZP0 D;  3AE2 C;  1KFY D;  3AE9 D;  3AE3 D;  4YTP C;  1NEN D;  3P4Q D;  4KX6 C;  2FBW D;  4YTM D;  2WP9 C;  1YQ3 C;  1KF6 D;  2WU5 C;  3ABV D;  3AE5 C;  3AE1 C;  2WDR D;  3SFE D;  3AE8 D;  2WDV C;  2ACZ C;  4YXD C;  3P4P C;  5C3J D;  1QLB C;  4YSX D;  3AEG D;  2WS3 C;  3P4R D;  1E7P C;  4YSZ C;  4KX6 D;  3CIR D;  2BS2 C;  3VRB C;  3VR8 D;  2WP9 D;  2WU5 D;  3AE5 D;  1YQ4 C;  2WU2 D;  3P4S C;  1NEK D;  2WQY D;  1ZOY D;  5C2T D;  3AEA D;  2B76 D;  3AE6 D;  3VR9 D;  3AED D;  2ACZ D;  3AEF C;  3AEE C;  2H89 C;  3SFD C;  4YSZ D;  3AE7 C;  1L0V C;  3AEC C;  2BS4 C;  3VRA C;  2BS3 C;  3AE2 D;  4YSY C;  4YTP D;  2WDQ C;  3AEB C;  4YTN C;  1YQ3 D;  1KFY C;  3AE9 C;  1NEN C;  3P4Q C;  3AE1 D;  2FBW C;  1KF6 C;  2WDV D;  4YXD D;  3P4P D;  3AE4 C;  3AE7 D;  1L0V D;  3AEC D;  2WS3 D;  3SFE C;  3AE8 C; 
#chains in the Genus database with same CATH topology
 4YT0 C;  4YSX C;  3VRB D;  2H88 C;  3P4R C;  1YQ4 D;  3CIR C;  3P4S D;  1ZP0 C;  3VR8 C;  4DHI B;  3AE3 C;  3AEF D;  2WU2 C;  1NEK C;  3AE4 D;  3AEE D;  2WQY C;  4LDT A;  4YTM C;  1ZOY C;  5C2T C;  3AEA C;  3ABV C;  2B76 C;  3VON A;  2H89 D;  3AE6 C;  3VR9 C;  3AED C;  3SFD D;  4YT0 D;  2WDR C;  2ZFY A;  3VRA D;  2H88 D;  4YSY D;  2WDQ D;  3AEB D;  5C3J C;  3AEG C;  4YTN D;  1ZP0 D;  3AE2 C;  1KFY D;  3AE9 D;  3AE3 D;  4YTP C;  1NEN D;  3P4Q D;  4KX6 C;  2FBW D;  4YTM D;  2WP9 C;  1YQ3 C;  1KF6 D;  2WU5 C;  3ABV D;  4DDI A;  3AE5 C;  3AE1 C;  2WDR D;  3SFE D;  3AE8 D;  2WDV C;  2ACZ C;  4YXD C;  3P4P C;  5C3J D;  1QLB C;  4YSX D;  3AEG D;  2WS3 C;  3P4R D;  1E7P C;  4FJV A;  4YSZ C;  4KX6 D;  3CIR D;  2BS2 C;  3VRB C;  3VR8 D;  2WP9 D;  2WU5 D;  3AE5 D;  1YQ4 C;  2WU2 D;  3P4S C;  1NEK D;  2WQY D;  1ZOY D;  5C2T D;  3AEA D;  4DHZ A;  2B76 D;  3AE6 D;  3VR9 D;  3AED D;  2ACZ D;  3AEF C;  3AEE C;  2H89 C;  3SFD C;  4YSZ D;  3AE7 C;  1L0V C;  3AEC C;  2BS4 C;  3VRA C;  2BS3 C;  3AE2 D;  4I6L A;  4YSY C;  4YTP D;  2WDQ C;  3AEB C;  4DDG A;  4YTN C;  1YQ3 D;  1KFY C;  3AE9 C;  1NEN C;  3P4Q C;  3AE1 D;  2FBW C;  1KF6 C;  1TFF A;  2WDV D;  4YXD D;  3P4P D;  3AE4 C;  3AE7 D;  1L0V D;  3AEC D;  2WS3 D;  4DHJ A;  3SFE C;  3AE8 C; 
#chains in the Genus database with same CATH homology
 4YT0 C;  4YSX C;  3VRB D;  2H88 C;  3P4R C;  1YQ4 D;  3CIR C;  3P4S D;  1ZP0 C;  3VR8 C;  3AE3 C;  3AEF D;  2WU2 C;  1NEK C;  3AE4 D;  3AEE D;  2WQY C;  4YTM C;  1ZOY C;  5C2T C;  3AEA C;  3ABV C;  2B76 C;  2H89 D;  3AE6 C;  3VR9 C;  3AED C;  3SFD D;  4YT0 D;  2WDR C;  3VRA D;  2H88 D;  4YSY D;  2WDQ D;  3AEB D;  5C3J C;  3AEG C;  4YTN D;  1ZP0 D;  3AE2 C;  1KFY D;  3AE9 D;  3AE3 D;  4YTP C;  1NEN D;  3P4Q D;  4KX6 C;  2FBW D;  4YTM D;  2WP9 C;  1YQ3 C;  1KF6 D;  2WU5 C;  3ABV D;  3AE5 C;  3AE1 C;  2WDR D;  3SFE D;  3AE8 D;  2WDV C;  2ACZ C;  4YXD C;  3P4P C;  5C3J D;  1QLB C;  4YSX D;  3AEG D;  2WS3 C;  3P4R D;  1E7P C;  4YSZ C;  4KX6 D;  3CIR D;  2BS2 C;  3VRB C;  3VR8 D;  2WP9 D;  2WU5 D;  3AE5 D;  1YQ4 C;  2WU2 D;  3P4S C;  1NEK D;  2WQY D;  1ZOY D;  5C2T D;  3AEA D;  2B76 D;  3AE6 D;  3VR9 D;  3AED D;  2ACZ D;  3AEF C;  3AEE C;  2H89 C;  3SFD C;  4YSZ D;  3AE7 C;  1L0V C;  3AEC C;  2BS4 C;  3VRA C;  2BS3 C;  3AE2 D;  4YSY C;  4YTP D;  2WDQ C;  3AEB C;  4YTN C;  1YQ3 D;  1KFY C;  3AE9 C;  1NEN C;  3P4Q C;  3AE1 D;  2FBW C;  1KF6 C;  2WDV D;  4YXD D;  3P4P D;  3AE4 C;  3AE7 D;  1L0V D;  3AEC D;  2WS3 D;  3SFE C;  3AE8 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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