1Q81G

Crystal structure of minihelix with 3' puromycin bound to a-site of the 50s ribosomal subunit.
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into Peptide Bond Formation
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S ribosomal rna
total genus 39
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2003-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1q81G01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1q81G02
1Q86G 3CCJE 1S72E 2OTLE 3CXCE 3DLLE 3CCUE 3CD6E 1N8RG 1M1KG 3CCME 3I56E 1KD1G 1VQOE 1VQ7E 1VQKE 1QVFE 3G4SE 3CCSE 3CMEE 1K9MG 1Q82G 2OTJE 1YJWE 4IO9E 1YJNE 1RL6A 1VQ6E 1W2BE 1VQNE 1M90G 4WF9E 5MLCH 1K8AG 3CC4E 3G6EE 4WFNE 1VQLE 1VQ9E 3CMAE 2CQLA 1VQ8E 4IOAE 3CCLE 5DM7E 5HL7E 1Q7YG 3CPWE 3J7ZG 1JJ2E 5DM6E 5GAGG 1KQSE 5GAEG 4IOCE 3CC7E 3I55E 2ZJRE 2QEXE 4U67E 3CCRE 5GADG 3OW2E 4WCEE 5JVGE 1Q81G 3G71E 3CCEE 3PIPE 5JVHE 2ZJQE 1VQ5E 1VQME 2ZJPE 3CC2E 3PIOE 1YI2E 5H1SI 3CCQE 1VQ4E 1VQPE 1NJIG 1KC8G 2QA4E 4WFBE 1YITE 5GAHG 1QVGE 3CCVE 1YJ9E 3CF5E 4WFAE 5AN9B 1YHQE 4UY8G 1YIJE 1K73G
chains in the Genus database with same CATH superfamily
3IGEA 1Q86G 3CCJE 1S72E 2OTLE 3CXCE 3DLLE 3CCUE 3CD6E 2G8CO 1N8RG 1M1KG 3CCME 2FKJA 2OL7A 3I56E 1KD1G 1VQOE 1VQ7E 1VQKE 1QVFE 3G4SE 3CCSE 3CMEE 1K9MG 2OY8A 2AF5A 1Q82G 2OTJE 1YJWE 3AUMO 4IO9E 1YJNE 1RL6A 1VQ6E 1W2BE 1VQNE 1M90G 4WF9E 5MLCH 3IG9A 3CC4E 1K8AG 3G6EE 4WFNE 1VQLE 1VQ9E 3CMAE 2CQLA 2OL8O 1VQ8E 4IOAE 5B3MO 3CCLE 5DM7E 2OYBO 2OY5O 5B10O 2HKDA 5HL7E 1Q7YG 3CPWE 3J7ZG 1JJ2E 5DM6E 5GAGG 1FJ1E 1KQSE 5GAEG 2I5ZO 4IOCE 2FKGA 3CC7E 5B11O 3I55E 1P4PA 2ZJRE 2OL6O 2QEXE 3CKFA 4U67E 3CCRE 5GADG 3OW2E 4WCEE 3EC5A 5JVGE 1Q81G 3G71E 3CCEE 3PIPE 5JVHE 2ZJQE 1VQ5E 1VQME 2ZJPE 3CC2E 1RJLC 3PIOE 1YI2E 5H1SI 3CCQE 1VQ4E 1VQPE 1NJIG 1KC8G 3CKGA 5B2AO 1OSPO 4WFBE 1YITE 5GAHG 2I5VO 1QVGE 3CCVE 2OY7A 1YJ9E 2PI3O 3CF5E 4WFAE 1YIJE 5AN9B 2OY1O 1YHQE 4UY8G 2QA4E 1K73G
chains in the Genus database with same CATH topology
1Q86G 3CCJE 1S72E 2OTLE 3CXCE 3DLLE 3CCUE 3CD6E 1N8RG 1M1KG 3CCME 3I56E 1KD1G 1VQOE 1VQ7E 1VQKE 1QVFE 3G4SE 3CCSE 3CMEE 1K9MG 1Q82G 2OTJE 1YJWE 4IO9E 1YJNE 1RL6A 1VQ6E 1W2BE 1VQNE 1M90G 4WF9E 5MLCH 1K8AG 3CC4E 3G6EE 4WFNE 1VQLE 1VQ9E 3CMAE 2CQLA 1VQ8E 4IOAE 3CCLE 5DM7E 5HL7E 1Q7YG 3CPWE 3J7ZG 1JJ2E 5DM6E 5GAGG 1KQSE 5GAEG 4IOCE 3CC7E 3I55E 2ZJRE 2QEXE 4U67E 3CCRE 5GADG 3OW2E 4WCEE 5JVGE 1Q81G 3G71E 3CCEE 3PIPE 5JVHE 2ZJQE 1VQ5E 1VQME 2ZJPE 3CC2E 3PIOE 1YI2E 5H1SI 3CCQE 1VQ4E 1VQPE 1NJIG 1KC8G 2QA4E 4WFBE 1YITE 5GAHG 1QVGE 3CCVE 1YJ9E 3CF5E 4WFAE 5AN9B 1YHQE 4UY8G 1YIJE 1K73G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q86 G;  3CCJ E;  1S72 E;  2OTL E;  3CXC E;  3DLL E;  3CCU E;  3CD6 E;  1N8R G;  1M1K G;  3CCM E;  3I56 E;  1KD1 G;  1VQO E;  1VQ7 E;  1VQK E;  1QVF E;  3G4S E;  3CCS E;  3CME E;  1K9M G;  1Q82 G;  2OTJ E;  1YJW E;  4IO9 E;  1YJN E;  1RL6 A;  1VQ6 E;  1W2B E;  1VQN E;  1M90 G;  4WF9 E;  5MLC H;  1K8A G;  3CC4 E;  3G6E E;  4WFN E;  1VQL E;  1VQ9 E;  3CMA E;  2CQL A;  1VQ8 E;  4IOA E;  3CCL E;  5DM7 E;  5HL7 E;  1Q7Y G;  3CPW E;  3J7Z G;  1JJ2 E;  5DM6 E;  5GAG G;  1KQS E;  5GAE G;  4IOC E;  3CC7 E;  3I55 E;  2ZJR E;  2QEX E;  4U67 E;  3CCR E;  5GAD G;  3OW2 E;  4WCE E;  5JVG E;  1Q81 G;  3G71 E;  3CCE E;  3PIP E;  5JVH E;  2ZJQ E;  1VQ5 E;  1VQM E;  2ZJP E;  3CC2 E;  3PIO E;  1YI2 E;  5H1S I;  3CCQ E;  1VQ4 E;  1VQP E;  1NJI G;  1KC8 G;  2QA4 E;  4WFB E;  1YIT E;  5GAH G;  1QVG E;  3CCV E;  1YJ9 E;  3CF5 E;  4WFA E;  5AN9 B;  1YHQ E;  4UY8 G;  1YIJ E;  1K73 G; 
#chains in the Genus database with same CATH topology
 3IGE A;  1Q86 G;  3CCJ E;  1S72 E;  2OTL E;  3CXC E;  3DLL E;  3CCU E;  3CD6 E;  2G8C O;  1N8R G;  1M1K G;  3CCM E;  2FKJ A;  2OL7 A;  3I56 E;  1KD1 G;  1VQO E;  1VQ7 E;  1VQK E;  1QVF E;  3G4S E;  3CCS E;  3CME E;  1K9M G;  2OY8 A;  2AF5 A;  1Q82 G;  2OTJ E;  1YJW E;  3AUM O;  4IO9 E;  1YJN E;  1RL6 A;  1VQ6 E;  1W2B E;  1VQN E;  1M90 G;  4WF9 E;  5MLC H;  3IG9 A;  3CC4 E;  1K8A G;  3G6E E;  4WFN E;  1VQL E;  1VQ9 E;  3CMA E;  2CQL A;  2OL8 O;  1VQ8 E;  4IOA E;  5B3M O;  3CCL E;  5DM7 E;  2OYB O;  2OY5 O;  5B10 O;  2HKD A;  5HL7 E;  1Q7Y G;  3CPW E;  3J7Z G;  1JJ2 E;  5DM6 E;  5GAG G;  1FJ1 E;  1KQS E;  5GAE G;  2I5Z O;  4IOC E;  2FKG A;  3CC7 E;  5B11 O;  3I55 E;  1P4P A;  2ZJR E;  2OL6 O;  2QEX E;  3CKF A;  4U67 E;  3CCR E;  5GAD G;  3OW2 E;  4WCE E;  3EC5 A;  5JVG E;  1Q81 G;  3G71 E;  3CCE E;  3PIP E;  5JVH E;  2ZJQ E;  1VQ5 E;  1VQM E;  2ZJP E;  3CC2 E;  1RJL C;  3PIO E;  1YI2 E;  5H1S I;  3CCQ E;  1VQ4 E;  1VQP E;  1NJI G;  1KC8 G;  3CKG A;  5B2A O;  1OSP O;  4WFB E;  1YIT E;  5GAH G;  2I5V O;  1QVG E;  3CCV E;  2OY7 A;  1YJ9 E;  2PI3 O;  3CF5 E;  4WFA E;  1YIJ E;  5AN9 B;  2OY1 O;  1YHQ E;  4UY8 G;  2QA4 E;  1K73 G; 
#chains in the Genus database with same CATH homology
 1Q86 G;  3CCJ E;  1S72 E;  2OTL E;  3CXC E;  3DLL E;  3CCU E;  3CD6 E;  1N8R G;  1M1K G;  3CCM E;  3I56 E;  1KD1 G;  1VQO E;  1VQ7 E;  1VQK E;  1QVF E;  3G4S E;  3CCS E;  3CME E;  1K9M G;  1Q82 G;  2OTJ E;  1YJW E;  4IO9 E;  1YJN E;  1RL6 A;  1VQ6 E;  1W2B E;  1VQN E;  1M90 G;  4WF9 E;  5MLC H;  1K8A G;  3CC4 E;  3G6E E;  4WFN E;  1VQL E;  1VQ9 E;  3CMA E;  2CQL A;  1VQ8 E;  4IOA E;  3CCL E;  5DM7 E;  5HL7 E;  1Q7Y G;  3CPW E;  3J7Z G;  1JJ2 E;  5DM6 E;  5GAG G;  1KQS E;  5GAE G;  4IOC E;  3CC7 E;  3I55 E;  2ZJR E;  2QEX E;  4U67 E;  3CCR E;  5GAD G;  3OW2 E;  4WCE E;  5JVG E;  1Q81 G;  3G71 E;  3CCE E;  3PIP E;  5JVH E;  2ZJQ E;  1VQ5 E;  1VQM E;  2ZJP E;  3CC2 E;  3PIO E;  1YI2 E;  5H1S I;  3CCQ E;  1VQ4 E;  1VQP E;  1NJI G;  1KC8 G;  2QA4 E;  4WFB E;  1YIT E;  5GAH G;  1QVG E;  3CCV E;  1YJ9 E;  3CF5 E;  4WFA E;  5AN9 B;  1YHQ E;  4UY8 G;  1YIJ E;  1K73 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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