1RJLC

Structure of the complex between ospb-ct and bactericidal fab-h6831
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
95
structure length
95
Chain Sequence
TVEIKEGTVTLKREIEKDGKVKVFLNDTAGSNKKTGKWEDSTSTLTISADSKKTKDLVFLTDGTITVQQYNTAGTSLEGSASEIKNLSELKNALK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target.
pubmed doi rcsb
molecule tags Immune system
source organism Borrelia burgdorferi
molecule keywords Fab H6831 L-chain
total genus 15
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2003-11-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.30 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Outer Surface Protein A; domain 3 1rjlC00
2OY7A 2HKDA 2AF5A 3EC5A 2FKJA 2OY8A 2FKGA 1RJLC
chains in the Genus database with same CATH superfamily
3CC4E 3DLLE 1QVFE 2OL6O 3CKFA 5HL7E 1QVGE 1Q86G 1VQ8E 3G6EE 1YHQE 3OW2E 3CF5E 2ZJRE 3CCVE 1K73G 3AUMO 3CCRE 3PIPE 3CCQE 1VQ4E 2AF5A 5DM6E 3CCLE 1S72E 3CKGA 3CCME 4IO9E 1VQME 5AN9B 2ZJPE 4UY8G 4WFNE 1VQ6E 1YJWE 1KD1G 1YI2E 3CMEE 2HKDA 1KQSE 5GADG 2PI3O 3CC2E 1YITE 1Q7YG 1N8RG 5GAGG 3G4SE 1K9MG 4IOCE 1VQPE 1M1KG 4U67E 5B2AO 1YIJE 1YJ9E 1K8AG 2OYBO 5JVHE 1KC8G 2OL7A 3CCUE 3CD6E 3CMAE 1RJLC 1VQ5E 2OY5O 1W2BE 3J7ZG 2OTJE 5B3MO 2OL8O 5GAEG 4WFAE 3CXCE 5B11O 3CCSE 2OTLE 1JJ2E 1M90G 3CCJE 5DM7E 1Q81G 2I5ZO 2QA4E 1RL6A 5GAHG 2QEXE 1VQLE 3IG9A 1YJNE 3CCEE 3G71E 2CQLA 4WF9E 2G8CO 1NJIG 1VQKE 2OY1O 1P4PA 1OSPO 3I56E 2I5VO 2ZJQE 1FJ1E 2OY8A 2FKGA 1VQ7E 2OY7A 3I55E 4WCEE 1VQ9E 1VQNE 4WFBE 1Q82G 3IGEA 3CPWE 5MLCH 4IOAE 3CC7E 5JVGE 3PIOE 3EC5A 2FKJA 5B10O 5H1SI 1VQOE
chains in the Genus database with same CATH topology
2OL6O 3CKFA 2G8CO 2OY1O 1P4PA 1OSPO 1RJLC 2HKDA 2PI3O 2OY5O 2I5VO 1FJ1E 2OY8A 2FKGA 5B3MO 2OL8O 5B11O 2OY7A 3AUMO 5B2AO 3IGEA 2OYBO 2AF5A 3CKGA 2I5ZO 3EC5A 2FKJA 5B10O 3IG9A 2OL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OY7 A;  2HKD A;  2AF5 A;  3EC5 A;  2FKJ A;  2OY8 A;  2FKG A;  1RJL C; 
#chains in the Genus database with same CATH topology
 3CC4 E;  3DLL E;  1QVF E;  2OL6 O;  3CKF A;  5HL7 E;  1QVG E;  1Q86 G;  1VQ8 E;  3G6E E;  1YHQ E;  3OW2 E;  3CF5 E;  2ZJR E;  3CCV E;  1K73 G;  3AUM O;  3CCR E;  3PIP E;  3CCQ E;  1VQ4 E;  2AF5 A;  5DM6 E;  3CCL E;  1S72 E;  3CKG A;  3CCM E;  4IO9 E;  1VQM E;  5AN9 B;  2ZJP E;  4UY8 G;  4WFN E;  1VQ6 E;  1YJW E;  1KD1 G;  1YI2 E;  3CME E;  2HKD A;  1KQS E;  5GAD G;  2PI3 O;  3CC2 E;  1YIT E;  1Q7Y G;  1N8R G;  5GAG G;  3G4S E;  1K9M G;  4IOC E;  1VQP E;  1M1K G;  4U67 E;  5B2A O;  1YIJ E;  1YJ9 E;  1K8A G;  2OYB O;  5JVH E;  1KC8 G;  2OL7 A;  3CCU E;  3CD6 E;  3CMA E;  1RJL C;  1VQ5 E;  2OY5 O;  1W2B E;  3J7Z G;  2OTJ E;  5B3M O;  2OL8 O;  5GAE G;  4WFA E;  3CXC E;  5B11 O;  3CCS E;  2OTL E;  1JJ2 E;  1M90 G;  3CCJ E;  5DM7 E;  1Q81 G;  2I5Z O;  2QA4 E;  1RL6 A;  5GAH G;  2QEX E;  1VQL E;  3IG9 A;  1YJN E;  3CCE E;  3G71 E;  2CQL A;  4WF9 E;  2G8C O;  1NJI G;  1VQK E;  2OY1 O;  1P4P A;  1OSP O;  3I56 E;  2I5V O;  2ZJQ E;  1FJ1 E;  2OY8 A;  2FKG A;  1VQ7 E;  2OY7 A;  3I55 E;  4WCE E;  1VQ9 E;  1VQN E;  4WFB E;  1Q82 G;  3IGE A;  3CPW E;  5MLC H;  4IOA E;  3CC7 E;  5JVG E;  3PIO E;  3EC5 A;  2FKJ A;  5B10 O;  5H1S I;  1VQO E; 
#chains in the Genus database with same CATH homology
 2OL6 O;  3CKF A;  2G8C O;  2OY1 O;  1P4P A;  1OSP O;  1RJL C;  2HKD A;  2PI3 O;  2OY5 O;  2I5V O;  1FJ1 E;  2OY8 A;  2FKG A;  5B3M O;  2OL8 O;  5B11 O;  2OY7 A;  3AUM O;  5B2A O;  3IGE A;  2OYB O;  2AF5 A;  3CKG A;  2I5Z O;  3EC5 A;  2FKJ A;  5B10 O;  3IG9 A;  2OL7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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