4U67E

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
171
structure length
171
Chain Sequence
GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
total genus 25
structure length 171
sequence length 171
ec nomenclature
pdb deposition date 2014-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4u67E02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 4u67E01
1VQOE 4IOAE 3CCLE 3OW2E 4WCEE 1YIJE 5HL7E 1VQLE 3CCJE 3G4SE 5GAHG 1NJIG 3CC4E 3CCME 3G6EE 1VQKE 2QA4E 2ZJRE 3PIPE 2OTJE 1YITE 1YJ9E 3CD6E 1W2BE 3DLLE 4IO9E 1K73G 3CF5E 3CCEE 3CC2E 1YI2E 1KC8G 4UY8G 1Q7YG 1Q86G 2OTLE 2QEXE 5JVGE 5AN9B 5DM7E 1VQ4E 1VQ7E 5JVHE 1VQNE 3I56E 3CCRE 4U67E 1K8AG 3CPWE 3CCVE 3CMEE 2ZJPE 5MLCH 1M90G 4WFAE 4IOCE 1VQ5E 5H1SI 1KQSE 3CMAE 1Q81G 1KD1G 1YJWE 1YHQE 3J7ZG 3CC7E 3CCUE 3CCSE 3CXCE 5GAGG 2CQLA 4WFBE 1S72E 5DM6E 4WFNE 1M1KG 5GADG 5GAEG 4WF9E 1JJ2E 1K9MG 2ZJQE 1N8RG 1VQPE 3I55E 1VQ6E 3PIOE 3G71E 1VQME 1VQ9E 1RL6A 3CCQE 1QVGE 1YJNE 1QVFE 1VQ8E 1Q82G
chains in the Genus database with same CATH superfamily
2OY1O 2OL7A 2OYBO 1VQOE 4IOAE 2FKJA 2OY8A 3CCLE 3OW2E 4WCEE 2FKGA 3IGEA 2I5ZO 1YIJE 5HL7E 2OL6O 1VQLE 3CCJE 3G4SE 5GAHG 1NJIG 2I5VO 3CC4E 3CCME 1OSPO 3CKGA 2G8CO 3G6EE 1VQKE 2QA4E 2ZJRE 3AUMO 3PIPE 1FJ1E 2OTJE 1YITE 1YJ9E 3CD6E 1W2BE 3DLLE 4IO9E 1K73G 3CF5E 3CCEE 3CC2E 1YI2E 1KC8G 4UY8G 1Q7YG 1Q86G 2OTLE 3CKFA 2QEXE 5JVGE 5AN9B 5DM7E 1VQ4E 1VQ7E 5JVHE 5B10O 2OL8O 1VQNE 2OY5O 3I56E 3CCRE 4U67E 1K8AG 3CPWE 3CCVE 3CMEE 2ZJPE 5MLCH 1M90G 2OY7A 4WFAE 5B3MO 4IOCE 1VQ5E 5H1SI 1KQSE 3CMAE 1P4PA 1Q81G 1KD1G 1YJWE 1YHQE 3J7ZG 5B11O 3CC7E 3CCUE 3CCSE 3CXCE 5GAGG 2CQLA 4WFBE 1S72E 5B2AO 5DM6E 4WFNE 1M1KG 5GADG 5GAEG 4WF9E 1JJ2E 2HKDA 1K9MG 2ZJQE 1N8RG 1VQPE 3I55E 1VQ6E 3PIOE 3G71E 2AF5A 1VQME 1VQ9E 3EC5A 1RL6A 1RJLC 3CCQE 3IG9A 1QVGE 1YJNE 1QVFE 1VQ8E 2PI3O 1Q82G
chains in the Genus database with same CATH topology
1VQOE 4IOAE 3CCLE 3OW2E 4WCEE 1YIJE 5HL7E 1VQLE 3CCJE 3G4SE 5GAHG 1NJIG 3CC4E 3CCME 3G6EE 1VQKE 2QA4E 2ZJRE 3PIPE 2OTJE 1YITE 1YJ9E 3CD6E 1W2BE 3DLLE 4IO9E 1K73G 3CF5E 3CCEE 3CC2E 1YI2E 1KC8G 4UY8G 1Q7YG 1Q86G 2OTLE 2QEXE 5JVGE 5AN9B 5DM7E 1VQ4E 1VQ7E 5JVHE 1VQNE 3I56E 3CCRE 4U67E 1K8AG 3CPWE 3CCVE 3CMEE 2ZJPE 5MLCH 1M90G 4WFAE 4IOCE 1VQ5E 5H1SI 1KQSE 3CMAE 1Q81G 1KD1G 1YJWE 1YHQE 3J7ZG 3CC7E 3CCUE 3CCSE 3CXCE 5GAGG 2CQLA 4WFBE 1S72E 5DM6E 4WFNE 1M1KG 5GADG 5GAEG 4WF9E 1JJ2E 1K9MG 2ZJQE 1N8RG 1VQPE 3I55E 1VQ6E 3PIOE 3G71E 1VQME 1VQ9E 1RL6A 3CCQE 1QVGE 1YJNE 1QVFE 1VQ8E 1Q82G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQO E;  4IOA E;  3CCL E;  3OW2 E;  4WCE E;  1YIJ E;  5HL7 E;  1VQL E;  3CCJ E;  3G4S E;  5GAH G;  1NJI G;  3CC4 E;  3CCM E;  3G6E E;  1VQK E;  2QA4 E;  2ZJR E;  3PIP E;  2OTJ E;  1YIT E;  1YJ9 E;  3CD6 E;  1W2B E;  3DLL E;  4IO9 E;  1K73 G;  3CF5 E;  3CCE E;  3CC2 E;  1YI2 E;  1KC8 G;  4UY8 G;  1Q7Y G;  1Q86 G;  2OTL E;  2QEX E;  5JVG E;  5AN9 B;  5DM7 E;  1VQ4 E;  1VQ7 E;  5JVH E;  1VQN E;  3I56 E;  3CCR E;  4U67 E;  1K8A G;  3CPW E;  3CCV E;  3CME E;  2ZJP E;  5MLC H;  1M90 G;  4WFA E;  4IOC E;  1VQ5 E;  5H1S I;  1KQS E;  3CMA E;  1Q81 G;  1KD1 G;  1YJW E;  1YHQ E;  3J7Z G;  3CC7 E;  3CCU E;  3CCS E;  3CXC E;  5GAG G;  2CQL A;  4WFB E;  1S72 E;  5DM6 E;  4WFN E;  1M1K G;  5GAD G;  5GAE G;  4WF9 E;  1JJ2 E;  1K9M G;  2ZJQ E;  1N8R G;  1VQP E;  3I55 E;  1VQ6 E;  3PIO E;  3G71 E;  1VQM E;  1VQ9 E;  1RL6 A;  3CCQ E;  1QVG E;  1YJN E;  1QVF E;  1VQ8 E;  1Q82 G; 
#chains in the Genus database with same CATH topology
 2OY1 O;  2OL7 A;  2OYB O;  1VQO E;  4IOA E;  2FKJ A;  2OY8 A;  3CCL E;  3OW2 E;  4WCE E;  2FKG A;  3IGE A;  2I5Z O;  1YIJ E;  5HL7 E;  2OL6 O;  1VQL E;  3CCJ E;  3G4S E;  5GAH G;  1NJI G;  2I5V O;  3CC4 E;  3CCM E;  1OSP O;  3CKG A;  2G8C O;  3G6E E;  1VQK E;  2QA4 E;  2ZJR E;  3AUM O;  3PIP E;  1FJ1 E;  2OTJ E;  1YIT E;  1YJ9 E;  3CD6 E;  1W2B E;  3DLL E;  4IO9 E;  1K73 G;  3CF5 E;  3CCE E;  3CC2 E;  1YI2 E;  1KC8 G;  4UY8 G;  1Q7Y G;  1Q86 G;  2OTL E;  3CKF A;  2QEX E;  5JVG E;  5AN9 B;  5DM7 E;  1VQ4 E;  1VQ7 E;  5JVH E;  5B10 O;  2OL8 O;  1VQN E;  2OY5 O;  3I56 E;  3CCR E;  4U67 E;  1K8A G;  3CPW E;  3CCV E;  3CME E;  2ZJP E;  5MLC H;  1M90 G;  2OY7 A;  4WFA E;  5B3M O;  4IOC E;  1VQ5 E;  5H1S I;  1KQS E;  3CMA E;  1P4P A;  1Q81 G;  1KD1 G;  1YJW E;  1YHQ E;  3J7Z G;  5B11 O;  3CC7 E;  3CCU E;  3CCS E;  3CXC E;  5GAG G;  2CQL A;  4WFB E;  1S72 E;  5B2A O;  5DM6 E;  4WFN E;  1M1K G;  5GAD G;  5GAE G;  4WF9 E;  1JJ2 E;  2HKD A;  1K9M G;  2ZJQ E;  1N8R G;  1VQP E;  3I55 E;  1VQ6 E;  3PIO E;  3G71 E;  2AF5 A;  1VQM E;  1VQ9 E;  3EC5 A;  1RL6 A;  1RJL C;  3CCQ E;  3IG9 A;  1QVG E;  1YJN E;  1QVF E;  1VQ8 E;  2PI3 O;  1Q82 G; 
#chains in the Genus database with same CATH homology
 1VQO E;  4IOA E;  3CCL E;  3OW2 E;  4WCE E;  1YIJ E;  5HL7 E;  1VQL E;  3CCJ E;  3G4S E;  5GAH G;  1NJI G;  3CC4 E;  3CCM E;  3G6E E;  1VQK E;  2QA4 E;  2ZJR E;  3PIP E;  2OTJ E;  1YIT E;  1YJ9 E;  3CD6 E;  1W2B E;  3DLL E;  4IO9 E;  1K73 G;  3CF5 E;  3CCE E;  3CC2 E;  1YI2 E;  1KC8 G;  4UY8 G;  1Q7Y G;  1Q86 G;  2OTL E;  2QEX E;  5JVG E;  5AN9 B;  5DM7 E;  1VQ4 E;  1VQ7 E;  5JVH E;  1VQN E;  3I56 E;  3CCR E;  4U67 E;  1K8A G;  3CPW E;  3CCV E;  3CME E;  2ZJP E;  5MLC H;  1M90 G;  4WFA E;  4IOC E;  1VQ5 E;  5H1S I;  1KQS E;  3CMA E;  1Q81 G;  1KD1 G;  1YJW E;  1YHQ E;  3J7Z G;  3CC7 E;  3CCU E;  3CCS E;  3CXC E;  5GAG G;  2CQL A;  4WFB E;  1S72 E;  5DM6 E;  4WFN E;  1M1K G;  5GAD G;  5GAE G;  4WF9 E;  1JJ2 E;  1K9M G;  2ZJQ E;  1N8R G;  1VQP E;  3I55 E;  1VQ6 E;  3PIO E;  3G71 E;  1VQM E;  1VQ9 E;  1RL6 A;  3CCQ E;  1QVG E;  1YJN E;  1QVF E;  1VQ8 E;  1Q82 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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