3CCVE

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2616a
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 37
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3ccvE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3ccvE01
4IOAE 3CCEE 3CF5E 3DLLE 2ZJRE 1YHQE 3PIOE 1VQ8E 3CC4E 4WFAE 1VQME 1JJ2E 1N8RG 1VQ9E 4WFNE 3CMAE 3CCSE 1M90G 2ZJQE 1QVFE 3CCVE 3PIPE 1VQOE 1W2BE 5GAGG 4U67E 1K8AG 3CCQE 1Q81G 2OTJE 5DM7E 1QVGE 3CCME 1YJWE 4WCEE 1VQ4E 1Q82G 4IO9E 1KC8G 1VQKE 3CCUE 1M1KG 3G71E 1VQPE 5MLCH 4WFBE 3J7ZG 1Q86G 1K9MG 3I55E 1YI2E 5GAEG 1YJNE 5GADG 4IOCE 5DM6E 3CCLE 5GAHG 1VQ6E 3CCJE 2QEXE 1KD1G 3I56E 2OTLE 2CQLA 1KQSE 5JVGE 3CD6E 1VQ5E 2ZJPE 2QA4E 1S72E 3G4SE 1YJ9E 1RL6A 1YITE 3CPWE 1VQ7E 4UY8G 1YIJE 1VQNE 3CC7E 3CC2E 5H1SI 5HL7E 4WF9E 1NJIG 3G6EE 5JVHE 3OW2E 3CCRE 1Q7YG 3CXCE 1VQLE 5AN9B 1K73G 3CMEE
chains in the Genus database with same CATH superfamily
4IOAE 3CCEE 2G8CO 3CF5E 2OY8A 3AUMO 1OSPO 3DLLE 2ZJRE 1YHQE 3PIOE 1VQ8E 3CC4E 4WFAE 2FKJA 2OY5O 1VQME 1JJ2E 1N8RG 1VQ9E 4WFNE 2HKDA 3CMAE 3CCSE 1M90G 3EC5A 2ZJQE 1QVFE 3CCVE 3PIPE 1VQOE 1W2BE 5GAGG 2I5VO 4U67E 1K8AG 5B10O 3CCQE 1Q81G 2OTJE 5DM7E 1QVGE 3CCME 2OL6O 1YJWE 4WCEE 1VQ4E 1Q82G 4IO9E 1KC8G 2I5ZO 2OL8O 2OL7A 1VQKE 3CCUE 1M1KG 1RJLC 3G71E 1VQPE 5MLCH 4WFBE 1FJ1E 3J7ZG 1Q86G 1P4PA 2AF5A 3I55E 1YI2E 1K9MG 5GAEG 3CKFA 1YJNE 5GADG 2PI3O 5DM6E 4IOCE 2OY1O 3CCLE 5GAHG 1VQ6E 3CCJE 2QEXE 1KD1G 3IG9A 5B3MO 3I56E 2OTLE 2CQLA 1KQSE 5JVGE 3CD6E 1VQ5E 2OY7A 2ZJPE 2QA4E 2FKGA 5B2AO 1S72E 3G4SE 1YJ9E 3CKGA 1RL6A 1YITE 2OYBO 3CPWE 1VQ7E 4UY8G 1YIJE 1VQNE 3CC7E 3CC2E 5H1SI 5HL7E 5B11O 4WF9E 1NJIG 3G6EE 5JVHE 3OW2E 3CCRE 1Q7YG 3CXCE 1VQLE 5AN9B 1K73G 3CMEE 3IGEA
chains in the Genus database with same CATH topology
4IOAE 3CCEE 3CF5E 3DLLE 2ZJRE 1YHQE 3PIOE 1VQ8E 3CC4E 4WFAE 1VQME 1JJ2E 1N8RG 1VQ9E 4WFNE 3CMAE 3CCSE 1M90G 2ZJQE 1QVFE 3CCVE 3PIPE 1VQOE 1W2BE 5GAGG 4U67E 1K8AG 3CCQE 1Q81G 2OTJE 5DM7E 1QVGE 3CCME 1YJWE 4WCEE 1VQ4E 1Q82G 4IO9E 1KC8G 1VQKE 3CCUE 1M1KG 3G71E 1VQPE 5MLCH 4WFBE 3J7ZG 1Q86G 1K9MG 3I55E 1YI2E 5GAEG 1YJNE 5GADG 4IOCE 5DM6E 3CCLE 5GAHG 1VQ6E 3CCJE 2QEXE 1KD1G 3I56E 2OTLE 2CQLA 1KQSE 5JVGE 3CD6E 1VQ5E 2ZJPE 2QA4E 1S72E 3G4SE 1YJ9E 1RL6A 1YITE 3CPWE 1VQ7E 4UY8G 1YIJE 1VQNE 3CC7E 3CC2E 5H1SI 5HL7E 4WF9E 1NJIG 3G6EE 5JVHE 3OW2E 3CCRE 1Q7YG 3CXCE 1VQLE 5AN9B 1K73G 3CMEE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOA E;  3CCE E;  3CF5 E;  3DLL E;  2ZJR E;  1YHQ E;  3PIO E;  1VQ8 E;  3CC4 E;  4WFA E;  1VQM E;  1JJ2 E;  1N8R G;  1VQ9 E;  4WFN E;  3CMA E;  3CCS E;  1M90 G;  2ZJQ E;  1QVF E;  3CCV E;  3PIP E;  1VQO E;  1W2B E;  5GAG G;  4U67 E;  1K8A G;  3CCQ E;  1Q81 G;  2OTJ E;  5DM7 E;  1QVG E;  3CCM E;  1YJW E;  4WCE E;  1VQ4 E;  1Q82 G;  4IO9 E;  1KC8 G;  1VQK E;  3CCU E;  1M1K G;  3G71 E;  1VQP E;  5MLC H;  4WFB E;  3J7Z G;  1Q86 G;  1K9M G;  3I55 E;  1YI2 E;  5GAE G;  1YJN E;  5GAD G;  4IOC E;  5DM6 E;  3CCL E;  5GAH G;  1VQ6 E;  3CCJ E;  2QEX E;  1KD1 G;  3I56 E;  2OTL E;  2CQL A;  1KQS E;  5JVG E;  3CD6 E;  1VQ5 E;  2ZJP E;  2QA4 E;  1S72 E;  3G4S E;  1YJ9 E;  1RL6 A;  1YIT E;  3CPW E;  1VQ7 E;  4UY8 G;  1YIJ E;  1VQN E;  3CC7 E;  3CC2 E;  5H1S I;  5HL7 E;  4WF9 E;  1NJI G;  3G6E E;  5JVH E;  3OW2 E;  3CCR E;  1Q7Y G;  3CXC E;  1VQL E;  5AN9 B;  1K73 G;  3CME E; 
#chains in the Genus database with same CATH topology
 4IOA E;  3CCE E;  2G8C O;  3CF5 E;  2OY8 A;  3AUM O;  1OSP O;  3DLL E;  2ZJR E;  1YHQ E;  3PIO E;  1VQ8 E;  3CC4 E;  4WFA E;  2FKJ A;  2OY5 O;  1VQM E;  1JJ2 E;  1N8R G;  1VQ9 E;  4WFN E;  2HKD A;  3CMA E;  3CCS E;  1M90 G;  3EC5 A;  2ZJQ E;  1QVF E;  3CCV E;  3PIP E;  1VQO E;  1W2B E;  5GAG G;  2I5V O;  4U67 E;  1K8A G;  5B10 O;  3CCQ E;  1Q81 G;  2OTJ E;  5DM7 E;  1QVG E;  3CCM E;  2OL6 O;  1YJW E;  4WCE E;  1VQ4 E;  1Q82 G;  4IO9 E;  1KC8 G;  2I5Z O;  2OL8 O;  2OL7 A;  1VQK E;  3CCU E;  1M1K G;  1RJL C;  3G71 E;  1VQP E;  5MLC H;  4WFB E;  1FJ1 E;  3J7Z G;  1Q86 G;  1P4P A;  2AF5 A;  3I55 E;  1YI2 E;  1K9M G;  5GAE G;  3CKF A;  1YJN E;  5GAD G;  2PI3 O;  5DM6 E;  4IOC E;  2OY1 O;  3CCL E;  5GAH G;  1VQ6 E;  3CCJ E;  2QEX E;  1KD1 G;  3IG9 A;  5B3M O;  3I56 E;  2OTL E;  2CQL A;  1KQS E;  5JVG E;  3CD6 E;  1VQ5 E;  2OY7 A;  2ZJP E;  2QA4 E;  2FKG A;  5B2A O;  1S72 E;  3G4S E;  1YJ9 E;  3CKG A;  1RL6 A;  1YIT E;  2OYB O;  3CPW E;  1VQ7 E;  4UY8 G;  1YIJ E;  1VQN E;  3CC7 E;  3CC2 E;  5H1S I;  5HL7 E;  5B11 O;  4WF9 E;  1NJI G;  3G6E E;  5JVH E;  3OW2 E;  3CCR E;  1Q7Y G;  3CXC E;  1VQL E;  5AN9 B;  1K73 G;  3CME E;  3IGE A; 
#chains in the Genus database with same CATH homology
 4IOA E;  3CCE E;  3CF5 E;  3DLL E;  2ZJR E;  1YHQ E;  3PIO E;  1VQ8 E;  3CC4 E;  4WFA E;  1VQM E;  1JJ2 E;  1N8R G;  1VQ9 E;  4WFN E;  3CMA E;  3CCS E;  1M90 G;  2ZJQ E;  1QVF E;  3CCV E;  3PIP E;  1VQO E;  1W2B E;  5GAG G;  4U67 E;  1K8A G;  3CCQ E;  1Q81 G;  2OTJ E;  5DM7 E;  1QVG E;  3CCM E;  1YJW E;  4WCE E;  1VQ4 E;  1Q82 G;  4IO9 E;  1KC8 G;  1VQK E;  3CCU E;  1M1K G;  3G71 E;  1VQP E;  5MLC H;  4WFB E;  3J7Z G;  1Q86 G;  1K9M G;  3I55 E;  1YI2 E;  5GAE G;  1YJN E;  5GAD G;  4IOC E;  5DM6 E;  3CCL E;  5GAH G;  1VQ6 E;  3CCJ E;  2QEX E;  1KD1 G;  3I56 E;  2OTL E;  2CQL A;  1KQS E;  5JVG E;  3CD6 E;  1VQ5 E;  2ZJP E;  2QA4 E;  1S72 E;  3G4S E;  1YJ9 E;  1RL6 A;  1YIT E;  3CPW E;  1VQ7 E;  4UY8 G;  1YIJ E;  1VQN E;  3CC7 E;  3CC2 E;  5H1S I;  5HL7 E;  4WF9 E;  1NJI G;  3G6E E;  5JVH E;  3OW2 E;  3CCR E;  1Q7Y G;  3CXC E;  1VQL E;  5AN9 B;  1K73 G;  3CME E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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